Experiment: pyrophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12810 and HMPREF1058_RS12805 are separated by 80 nucleotides HMPREF1058_RS12805 and HMPREF1058_RS12800 are separated by 168 nucleotides HMPREF1058_RS12800 and HMPREF1058_RS12795 are separated by 89 nucleotides HMPREF1058_RS12795 and HMPREF1058_RS12790 are separated by 294 nucleotides
HMPREF1058_RS12810: HMPREF1058_RS12810 - VanZ family protein, at 26,640 to 27,026
_RS12810
HMPREF1058_RS12805: HMPREF1058_RS12805 - RNA polymerase sigma factor, at 27,107 to 27,610
_RS12805
HMPREF1058_RS12800: HMPREF1058_RS12800 - TonB-dependent receptor, at 27,779 to 30,253
_RS12800
HMPREF1058_RS12795: HMPREF1058_RS12795 - CYTH domain-containing protein, at 30,343 to 30,813
_RS12795
HMPREF1058_RS12790: HMPREF1058_RS12790 - peptide chain release factor 2, at 31,108 to 32,223
_RS12790
Position (kb) 27
28
29
30
31 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 26.804 kb on - strand, within HMPREF1058_RS12810 at 26.845 kb on + strand, within HMPREF1058_RS12810 at 26.846 kb on - strand, within HMPREF1058_RS12810 at 26.863 kb on + strand, within HMPREF1058_RS12810 at 26.864 kb on - strand, within HMPREF1058_RS12810 at 26.876 kb on + strand, within HMPREF1058_RS12810 at 26.877 kb on - strand, within HMPREF1058_RS12810 at 26.907 kb on + strand, within HMPREF1058_RS12810 at 26.981 kb on - strand, within HMPREF1058_RS12810 at 26.989 kb on - strand at 26.991 kb on + strand at 26.992 kb on - strand at 26.995 kb on + strand at 26.995 kb on + strand at 27.009 kb on - strand at 27.010 kb on + strand at 27.011 kb on - strand at 27.011 kb on - strand at 27.018 kb on - strand at 27.082 kb on + strand at 27.084 kb on + strand at 27.089 kb on + strand at 27.108 kb on + strand at 27.109 kb on - strand at 27.208 kb on + strand, within HMPREF1058_RS12805 at 27.224 kb on + strand, within HMPREF1058_RS12805 at 27.224 kb on + strand, within HMPREF1058_RS12805 at 27.228 kb on + strand, within HMPREF1058_RS12805 at 27.228 kb on + strand, within HMPREF1058_RS12805 at 27.228 kb on + strand, within HMPREF1058_RS12805 at 27.228 kb on + strand, within HMPREF1058_RS12805 at 27.228 kb on + strand, within HMPREF1058_RS12805 at 27.228 kb on + strand, within HMPREF1058_RS12805 at 27.228 kb on + strand, within HMPREF1058_RS12805 at 27.229 kb on - strand, within HMPREF1058_RS12805 at 27.229 kb on - strand, within HMPREF1058_RS12805 at 27.229 kb on - strand, within HMPREF1058_RS12805 at 27.232 kb on + strand, within HMPREF1058_RS12805 at 27.232 kb on + strand, within HMPREF1058_RS12805 at 27.233 kb on - strand, within HMPREF1058_RS12805 at 27.282 kb on - strand, within HMPREF1058_RS12805 at 27.409 kb on + strand, within HMPREF1058_RS12805 at 27.410 kb on - strand, within HMPREF1058_RS12805 at 27.490 kb on + strand, within HMPREF1058_RS12805 at 27.574 kb on + strand at 27.578 kb on + strand at 27.579 kb on - strand at 27.582 kb on - strand at 27.592 kb on + strand at 27.613 kb on + strand at 27.614 kb on - strand at 27.614 kb on - strand at 27.714 kb on + strand at 27.715 kb on - strand at 27.727 kb on - strand at 27.901 kb on + strand at 27.987 kb on + strand at 28.022 kb on - strand at 28.069 kb on - strand, within HMPREF1058_RS12800 at 28.114 kb on + strand, within HMPREF1058_RS12800 at 28.225 kb on + strand, within HMPREF1058_RS12800 at 28.236 kb on + strand, within HMPREF1058_RS12800 at 28.237 kb on - strand, within HMPREF1058_RS12800 at 28.237 kb on - strand, within HMPREF1058_RS12800 at 28.237 kb on - strand, within HMPREF1058_RS12800 at 28.237 kb on - strand, within HMPREF1058_RS12800 at 28.316 kb on - strand, within HMPREF1058_RS12800 at 28.326 kb on - strand, within HMPREF1058_RS12800 at 28.331 kb on - strand, within HMPREF1058_RS12800 at 28.336 kb on - strand, within HMPREF1058_RS12800 at 28.340 kb on - strand, within HMPREF1058_RS12800 at 28.371 kb on + strand, within HMPREF1058_RS12800 at 28.380 kb on - strand, within HMPREF1058_RS12800 at 28.380 kb on - strand, within HMPREF1058_RS12800 at 28.381 kb on + strand, within HMPREF1058_RS12800 at 28.388 kb on - strand, within HMPREF1058_RS12800 at 28.402 kb on - strand, within HMPREF1058_RS12800 at 28.418 kb on + strand, within HMPREF1058_RS12800 at 28.570 kb on + strand, within HMPREF1058_RS12800 at 28.571 kb on - strand, within HMPREF1058_RS12800 at 28.573 kb on + strand, within HMPREF1058_RS12800 at 28.690 kb on + strand, within HMPREF1058_RS12800 at 28.696 kb on + strand, within HMPREF1058_RS12800 at 28.697 kb on - strand, within HMPREF1058_RS12800 at 28.780 kb on + strand, within HMPREF1058_RS12800 at 28.788 kb on + strand, within HMPREF1058_RS12800 at 28.788 kb on + strand, within HMPREF1058_RS12800 at 28.789 kb on - strand, within HMPREF1058_RS12800 at 28.795 kb on + strand, within HMPREF1058_RS12800 at 28.813 kb on - strand, within HMPREF1058_RS12800 at 28.816 kb on + strand, within HMPREF1058_RS12800 at 28.817 kb on - strand, within HMPREF1058_RS12800 at 28.817 kb on - strand, within HMPREF1058_RS12800 at 28.879 kb on - strand, within HMPREF1058_RS12800 at 28.883 kb on + strand, within HMPREF1058_RS12800 at 29.283 kb on + strand, within HMPREF1058_RS12800 at 29.415 kb on + strand, within HMPREF1058_RS12800 at 29.415 kb on + strand, within HMPREF1058_RS12800 at 29.420 kb on - strand, within HMPREF1058_RS12800 at 29.421 kb on + strand, within HMPREF1058_RS12800 at 29.428 kb on - strand, within HMPREF1058_RS12800 at 29.481 kb on + strand, within HMPREF1058_RS12800 at 29.492 kb on - strand, within HMPREF1058_RS12800 at 29.521 kb on + strand, within HMPREF1058_RS12800 at 29.554 kb on + strand, within HMPREF1058_RS12800 at 29.555 kb on - strand, within HMPREF1058_RS12800 at 29.555 kb on - strand, within HMPREF1058_RS12800 at 29.586 kb on + strand, within HMPREF1058_RS12800 at 29.616 kb on - strand, within HMPREF1058_RS12800 at 29.618 kb on - strand, within HMPREF1058_RS12800 at 29.624 kb on - strand, within HMPREF1058_RS12800 at 29.642 kb on - strand, within HMPREF1058_RS12800 at 29.652 kb on - strand, within HMPREF1058_RS12800 at 29.652 kb on - strand, within HMPREF1058_RS12800 at 29.666 kb on - strand, within HMPREF1058_RS12800 at 29.708 kb on - strand, within HMPREF1058_RS12800 at 29.713 kb on + strand, within HMPREF1058_RS12800 at 29.819 kb on + strand, within HMPREF1058_RS12800 at 29.819 kb on + strand, within HMPREF1058_RS12800 at 29.822 kb on - strand, within HMPREF1058_RS12800 at 29.824 kb on + strand, within HMPREF1058_RS12800 at 29.825 kb on - strand, within HMPREF1058_RS12800 at 29.825 kb on - strand, within HMPREF1058_RS12800 at 29.825 kb on - strand, within HMPREF1058_RS12800 at 29.825 kb on - strand, within HMPREF1058_RS12800 at 29.825 kb on - strand, within HMPREF1058_RS12800 at 29.826 kb on + strand, within HMPREF1058_RS12800 at 29.840 kb on + strand, within HMPREF1058_RS12800 at 29.992 kb on + strand, within HMPREF1058_RS12800 at 30.109 kb on + strand at 30.110 kb on - strand at 30.143 kb on + strand at 30.226 kb on + strand at 30.226 kb on + strand at 30.255 kb on + strand at 30.334 kb on - strand at 30.335 kb on + strand at 30.337 kb on + strand at 30.338 kb on - strand at 30.338 kb on - strand at 30.338 kb on - strand at 30.550 kb on - strand, within HMPREF1058_RS12795 at 30.717 kb on + strand at 30.723 kb on + strand, within HMPREF1058_RS12795 at 30.723 kb on + strand, within HMPREF1058_RS12795 at 30.724 kb on - strand, within HMPREF1058_RS12795 at 30.725 kb on + strand, within HMPREF1058_RS12795 at 30.744 kb on + strand, within HMPREF1058_RS12795 at 30.745 kb on - strand, within HMPREF1058_RS12795 at 30.767 kb on + strand at 30.785 kb on - strand at 30.799 kb on + strand at 30.828 kb on + strand at 30.828 kb on + strand at 30.891 kb on + strand at 30.891 kb on + strand at 30.892 kb on - strand at 30.900 kb on + strand at 30.913 kb on + strand at 30.923 kb on + strand at 30.933 kb on - strand at 30.953 kb on + strand at 30.953 kb on + strand at 30.961 kb on + strand at 30.962 kb on - strand at 30.988 kb on + strand at 31.016 kb on - strand at 31.037 kb on - strand at 31.091 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyrophosphate 1 mM phosphorus source remove 26,804 - HMPREF1058_RS12810 0.42 -1.7 26,845 + HMPREF1058_RS12810 0.53 -1.4 26,846 - HMPREF1058_RS12810 0.53 -0.6 26,863 + HMPREF1058_RS12810 0.58 -0.8 26,864 - HMPREF1058_RS12810 0.58 -1.0 26,876 + HMPREF1058_RS12810 0.61 -3.5 26,877 - HMPREF1058_RS12810 0.61 -1.9 26,907 + HMPREF1058_RS12810 0.69 -0.9 26,981 - HMPREF1058_RS12810 0.88 -1.7 26,989 - -0.8 26,991 + -1.3 26,992 - -1.8 26,995 + +0.0 26,995 + -2.7 27,009 - -1.5 27,010 + -3.7 27,011 - -1.9 27,011 - -1.3 27,018 - -1.7 27,082 + -1.2 27,084 + -4.0 27,089 + -2.3 27,108 + -0.2 27,109 - -0.3 27,208 + HMPREF1058_RS12805 0.20 +0.0 27,224 + HMPREF1058_RS12805 0.23 -4.2 27,224 + HMPREF1058_RS12805 0.23 -3.2 27,228 + HMPREF1058_RS12805 0.24 -2.9 27,228 + HMPREF1058_RS12805 0.24 -3.8 27,228 + HMPREF1058_RS12805 0.24 -2.0 27,228 + HMPREF1058_RS12805 0.24 -2.9 27,228 + HMPREF1058_RS12805 0.24 -1.2 27,228 + HMPREF1058_RS12805 0.24 -3.7 27,228 + HMPREF1058_RS12805 0.24 -2.9 27,229 - HMPREF1058_RS12805 0.24 -1.9 27,229 - HMPREF1058_RS12805 0.24 -2.5 27,229 - HMPREF1058_RS12805 0.24 -4.2 27,232 + HMPREF1058_RS12805 0.25 -1.4 27,232 + HMPREF1058_RS12805 0.25 -2.0 27,233 - HMPREF1058_RS12805 0.25 -3.8 27,282 - HMPREF1058_RS12805 0.35 -1.5 27,409 + HMPREF1058_RS12805 0.60 -3.5 27,410 - HMPREF1058_RS12805 0.60 -3.3 27,490 + HMPREF1058_RS12805 0.76 -2.2 27,574 + -2.6 27,578 + +0.4 27,579 - -3.2 27,582 - -1.3 27,592 + -2.6 27,613 + -2.6 27,614 - -3.4 27,614 - -2.6 27,714 + -1.6 27,715 - -4.1 27,727 - -3.0 27,901 + -2.4 27,987 + -1.9 28,022 - -1.6 28,069 - HMPREF1058_RS12800 0.12 -2.4 28,114 + HMPREF1058_RS12800 0.14 -1.1 28,225 + HMPREF1058_RS12800 0.18 -2.3 28,236 + HMPREF1058_RS12800 0.18 -4.2 28,237 - HMPREF1058_RS12800 0.19 -4.1 28,237 - HMPREF1058_RS12800 0.19 -4.2 28,237 - HMPREF1058_RS12800 0.19 -2.8 28,237 - HMPREF1058_RS12800 0.19 -3.2 28,316 - HMPREF1058_RS12800 0.22 -1.7 28,326 - HMPREF1058_RS12800 0.22 -1.1 28,331 - HMPREF1058_RS12800 0.22 -1.2 28,336 - HMPREF1058_RS12800 0.23 -3.6 28,340 - HMPREF1058_RS12800 0.23 -2.5 28,371 + HMPREF1058_RS12800 0.24 +0.4 28,380 - HMPREF1058_RS12800 0.24 -2.2 28,380 - HMPREF1058_RS12800 0.24 -0.8 28,381 + HMPREF1058_RS12800 0.24 -3.2 28,388 - HMPREF1058_RS12800 0.25 -2.6 28,402 - HMPREF1058_RS12800 0.25 -3.2 28,418 + HMPREF1058_RS12800 0.26 -2.0 28,570 + HMPREF1058_RS12800 0.32 -2.0 28,571 - HMPREF1058_RS12800 0.32 -4.9 28,573 + HMPREF1058_RS12800 0.32 -1.3 28,690 + HMPREF1058_RS12800 0.37 -1.6 28,696 + HMPREF1058_RS12800 0.37 -1.7 28,697 - HMPREF1058_RS12800 0.37 -2.3 28,780 + HMPREF1058_RS12800 0.40 -1.7 28,788 + HMPREF1058_RS12800 0.41 -2.0 28,788 + HMPREF1058_RS12800 0.41 -1.7 28,789 - HMPREF1058_RS12800 0.41 -3.2 28,795 + HMPREF1058_RS12800 0.41 -1.4 28,813 - HMPREF1058_RS12800 0.42 -1.7 28,816 + HMPREF1058_RS12800 0.42 -2.0 28,817 - HMPREF1058_RS12800 0.42 -3.0 28,817 - HMPREF1058_RS12800 0.42 -1.0 28,879 - HMPREF1058_RS12800 0.44 -1.8 28,883 + HMPREF1058_RS12800 0.45 -1.8 29,283 + HMPREF1058_RS12800 0.61 -0.8 29,415 + HMPREF1058_RS12800 0.66 -1.1 29,415 + HMPREF1058_RS12800 0.66 -1.2 29,420 - HMPREF1058_RS12800 0.66 -2.9 29,421 + HMPREF1058_RS12800 0.66 -1.3 29,428 - HMPREF1058_RS12800 0.67 -3.1 29,481 + HMPREF1058_RS12800 0.69 -1.2 29,492 - HMPREF1058_RS12800 0.69 -1.5 29,521 + HMPREF1058_RS12800 0.70 -1.9 29,554 + HMPREF1058_RS12800 0.72 -3.0 29,555 - HMPREF1058_RS12800 0.72 -1.6 29,555 - HMPREF1058_RS12800 0.72 -3.5 29,586 + HMPREF1058_RS12800 0.73 -1.7 29,616 - HMPREF1058_RS12800 0.74 -2.7 29,618 - HMPREF1058_RS12800 0.74 +1.0 29,624 - HMPREF1058_RS12800 0.75 -2.1 29,642 - HMPREF1058_RS12800 0.75 -1.5 29,652 - HMPREF1058_RS12800 0.76 -0.9 29,652 - HMPREF1058_RS12800 0.76 -0.6 29,666 - HMPREF1058_RS12800 0.76 -1.3 29,708 - HMPREF1058_RS12800 0.78 -2.2 29,713 + HMPREF1058_RS12800 0.78 -1.1 29,819 + HMPREF1058_RS12800 0.82 -2.9 29,819 + HMPREF1058_RS12800 0.82 -2.0 29,822 - HMPREF1058_RS12800 0.83 -0.9 29,824 + HMPREF1058_RS12800 0.83 -1.0 29,825 - HMPREF1058_RS12800 0.83 -0.4 29,825 - HMPREF1058_RS12800 0.83 -2.3 29,825 - HMPREF1058_RS12800 0.83 +1.4 29,825 - HMPREF1058_RS12800 0.83 -2.2 29,825 - HMPREF1058_RS12800 0.83 +0.0 29,826 + HMPREF1058_RS12800 0.83 -0.7 29,840 + HMPREF1058_RS12800 0.83 -1.2 29,992 + HMPREF1058_RS12800 0.89 -2.2 30,109 + +0.4 30,110 - -0.1 30,143 + -1.8 30,226 + -0.7 30,226 + -2.4 30,255 + -2.5 30,334 - -1.6 30,335 + -3.3 30,337 + +1.4 30,338 - -2.1 30,338 - -1.2 30,338 - -1.7 30,550 - HMPREF1058_RS12795 0.44 -0.2 30,717 + +0.0 30,723 + HMPREF1058_RS12795 0.81 -1.0 30,723 + HMPREF1058_RS12795 0.81 -2.2 30,724 - HMPREF1058_RS12795 0.81 +0.0 30,725 + HMPREF1058_RS12795 0.81 -1.0 30,744 + HMPREF1058_RS12795 0.85 -2.1 30,745 - HMPREF1058_RS12795 0.85 -0.9 30,767 + -2.2 30,785 - -0.5 30,799 + -0.2 30,828 + -0.5 30,828 + -1.7 30,891 + -1.1 30,891 + -2.1 30,892 - -0.3 30,900 + -1.4 30,913 + -1.1 30,923 + -1.0 30,933 - +0.3 30,953 + -2.4 30,953 + -2.6 30,961 + -0.8 30,962 - -0.7 30,988 + -0.9 31,016 - -0.8 31,037 - +0.3 31,091 - +0.0
Or see this region's nucleotide sequence