Experiment: pyrophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12535 and HMPREF1058_RS12530 are separated by 78 nucleotides HMPREF1058_RS12530 and HMPREF1058_RS12525 are separated by 133 nucleotides HMPREF1058_RS12525 and HMPREF1058_RS12520 are separated by 81 nucleotides
HMPREF1058_RS12535: HMPREF1058_RS12535 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 83,263 to 84,129
_RS12535
HMPREF1058_RS12530: HMPREF1058_RS12530 - hypothetical protein, at 84,208 to 84,639
_RS12530
HMPREF1058_RS12525: HMPREF1058_RS12525 - Na/Pi cotransporter family protein, at 84,773 to 86,464
_RS12525
HMPREF1058_RS12520: HMPREF1058_RS12520 - nucleoside kinase, at 86,546 to 88,219
_RS12520
Position (kb) 84
85
86
87 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 83.835 kb on + strand, within HMPREF1058_RS12535 at 83.836 kb on - strand, within HMPREF1058_RS12535 at 83.877 kb on - strand, within HMPREF1058_RS12535 at 83.883 kb on - strand, within HMPREF1058_RS12535 at 83.887 kb on + strand, within HMPREF1058_RS12535 at 83.888 kb on - strand, within HMPREF1058_RS12535 at 83.889 kb on + strand, within HMPREF1058_RS12535 at 83.930 kb on - strand, within HMPREF1058_RS12535 at 83.970 kb on - strand, within HMPREF1058_RS12535 at 84.016 kb on - strand, within HMPREF1058_RS12535 at 84.028 kb on + strand, within HMPREF1058_RS12535 at 84.028 kb on + strand, within HMPREF1058_RS12535 at 84.029 kb on - strand, within HMPREF1058_RS12535 at 84.029 kb on - strand, within HMPREF1058_RS12535 at 84.075 kb on + strand at 84.087 kb on + strand at 84.105 kb on - strand at 84.226 kb on + strand at 84.228 kb on + strand at 84.228 kb on + strand at 84.229 kb on - strand at 84.229 kb on - strand at 84.229 kb on - strand at 84.288 kb on + strand, within HMPREF1058_RS12530 at 84.298 kb on - strand, within HMPREF1058_RS12530 at 84.299 kb on + strand, within HMPREF1058_RS12530 at 84.300 kb on - strand, within HMPREF1058_RS12530 at 84.300 kb on - strand, within HMPREF1058_RS12530 at 84.303 kb on - strand, within HMPREF1058_RS12530 at 84.322 kb on - strand, within HMPREF1058_RS12530 at 84.323 kb on + strand, within HMPREF1058_RS12530 at 84.346 kb on + strand, within HMPREF1058_RS12530 at 84.394 kb on + strand, within HMPREF1058_RS12530 at 84.400 kb on - strand, within HMPREF1058_RS12530 at 84.429 kb on - strand, within HMPREF1058_RS12530 at 84.517 kb on - strand, within HMPREF1058_RS12530 at 84.517 kb on - strand, within HMPREF1058_RS12530 at 84.588 kb on - strand, within HMPREF1058_RS12530 at 84.588 kb on - strand, within HMPREF1058_RS12530 at 84.588 kb on - strand, within HMPREF1058_RS12530 at 84.589 kb on + strand, within HMPREF1058_RS12530 at 84.590 kb on - strand, within HMPREF1058_RS12530 at 84.641 kb on + strand at 84.642 kb on - strand at 84.642 kb on - strand at 84.674 kb on + strand at 84.681 kb on + strand at 84.720 kb on + strand at 84.746 kb on + strand at 84.747 kb on - strand at 84.747 kb on - strand at 84.760 kb on + strand at 84.761 kb on - strand at 84.825 kb on + strand at 84.825 kb on + strand at 84.865 kb on - strand at 84.899 kb on - strand at 84.944 kb on - strand, within HMPREF1058_RS12525 at 84.962 kb on - strand, within HMPREF1058_RS12525 at 84.965 kb on - strand, within HMPREF1058_RS12525 at 84.984 kb on - strand, within HMPREF1058_RS12525 at 85.069 kb on - strand at 85.433 kb on - strand, within HMPREF1058_RS12525 at 85.442 kb on - strand, within HMPREF1058_RS12525 at 85.442 kb on - strand, within HMPREF1058_RS12525 at 85.445 kb on - strand, within HMPREF1058_RS12525 at 85.559 kb on - strand, within HMPREF1058_RS12525 at 85.626 kb on - strand at 86.060 kb on - strand, within HMPREF1058_RS12525 at 86.250 kb on - strand, within HMPREF1058_RS12525 at 86.531 kb on - strand at 86.542 kb on - strand at 86.555 kb on - strand at 86.585 kb on - strand at 86.627 kb on + strand at 86.630 kb on - strand at 86.630 kb on - strand at 86.643 kb on + strand at 86.644 kb on - strand at 86.688 kb on + strand at 86.688 kb on + strand at 86.716 kb on + strand, within HMPREF1058_RS12520 at 86.717 kb on - strand at 86.727 kb on + strand, within HMPREF1058_RS12520 at 86.727 kb on + strand, within HMPREF1058_RS12520 at 86.727 kb on + strand, within HMPREF1058_RS12520 at 86.728 kb on - strand, within HMPREF1058_RS12520 at 86.743 kb on - strand, within HMPREF1058_RS12520 at 86.768 kb on + strand, within HMPREF1058_RS12520 at 86.768 kb on + strand, within HMPREF1058_RS12520 at 86.768 kb on + strand, within HMPREF1058_RS12520 at 86.768 kb on + strand, within HMPREF1058_RS12520 at 86.769 kb on - strand, within HMPREF1058_RS12520 at 86.769 kb on - strand, within HMPREF1058_RS12520 at 86.814 kb on + strand, within HMPREF1058_RS12520 at 86.814 kb on + strand, within HMPREF1058_RS12520 at 86.814 kb on + strand, within HMPREF1058_RS12520 at 86.864 kb on + strand, within HMPREF1058_RS12520 at 86.917 kb on + strand, within HMPREF1058_RS12520 at 86.918 kb on - strand, within HMPREF1058_RS12520 at 87.056 kb on + strand, within HMPREF1058_RS12520 at 87.065 kb on + strand, within HMPREF1058_RS12520 at 87.066 kb on - strand, within HMPREF1058_RS12520 at 87.066 kb on - strand, within HMPREF1058_RS12520 at 87.068 kb on + strand, within HMPREF1058_RS12520 at 87.070 kb on + strand, within HMPREF1058_RS12520 at 87.092 kb on + strand, within HMPREF1058_RS12520 at 87.124 kb on + strand at 87.149 kb on - strand, within HMPREF1058_RS12520 at 87.156 kb on - strand, within HMPREF1058_RS12520 at 87.433 kb on + strand, within HMPREF1058_RS12520
Per-strain Table
Position Strand Gene LocusTag Fraction pyrophosphate 1 mM phosphorus source remove 83,835 + HMPREF1058_RS12535 0.66 -1.2 83,836 - HMPREF1058_RS12535 0.66 -1.7 83,877 - HMPREF1058_RS12535 0.71 -0.3 83,883 - HMPREF1058_RS12535 0.72 -2.2 83,887 + HMPREF1058_RS12535 0.72 -2.1 83,888 - HMPREF1058_RS12535 0.72 -0.2 83,889 + HMPREF1058_RS12535 0.72 -1.0 83,930 - HMPREF1058_RS12535 0.77 -2.8 83,970 - HMPREF1058_RS12535 0.82 -1.6 84,016 - HMPREF1058_RS12535 0.87 -1.8 84,028 + HMPREF1058_RS12535 0.88 -1.9 84,028 + HMPREF1058_RS12535 0.88 -0.9 84,029 - HMPREF1058_RS12535 0.88 -2.3 84,029 - HMPREF1058_RS12535 0.88 -1.2 84,075 + -2.8 84,087 + -2.6 84,105 - -0.2 84,226 + -1.0 84,228 + -0.8 84,228 + +1.4 84,229 - -0.8 84,229 - -0.2 84,229 - -0.2 84,288 + HMPREF1058_RS12530 0.19 -1.0 84,298 - HMPREF1058_RS12530 0.21 -2.2 84,299 + HMPREF1058_RS12530 0.21 -0.6 84,300 - HMPREF1058_RS12530 0.21 -0.4 84,300 - HMPREF1058_RS12530 0.21 -0.6 84,303 - HMPREF1058_RS12530 0.22 -0.6 84,322 - HMPREF1058_RS12530 0.26 -1.1 84,323 + HMPREF1058_RS12530 0.27 -0.5 84,346 + HMPREF1058_RS12530 0.32 -1.9 84,394 + HMPREF1058_RS12530 0.43 +0.0 84,400 - HMPREF1058_RS12530 0.44 -0.1 84,429 - HMPREF1058_RS12530 0.51 -0.8 84,517 - HMPREF1058_RS12530 0.72 +1.2 84,517 - HMPREF1058_RS12530 0.72 -0.7 84,588 - HMPREF1058_RS12530 0.88 +0.1 84,588 - HMPREF1058_RS12530 0.88 +0.2 84,588 - HMPREF1058_RS12530 0.88 -0.4 84,589 + HMPREF1058_RS12530 0.88 -2.5 84,590 - HMPREF1058_RS12530 0.88 -0.6 84,641 + -0.7 84,642 - +0.5 84,642 - +0.8 84,674 + -1.5 84,681 + -0.5 84,720 + -1.0 84,746 + -2.8 84,747 - -1.8 84,747 - -0.2 84,760 + +0.2 84,761 - -0.6 84,825 + +0.8 84,825 + -1.2 84,865 - -2.8 84,899 - -2.2 84,944 - HMPREF1058_RS12525 0.10 -1.5 84,962 - HMPREF1058_RS12525 0.11 -2.1 84,965 - HMPREF1058_RS12525 0.11 -3.4 84,984 - HMPREF1058_RS12525 0.12 -1.6 85,069 - +0.4 85,433 - HMPREF1058_RS12525 0.39 -0.1 85,442 - HMPREF1058_RS12525 0.40 -3.0 85,442 - HMPREF1058_RS12525 0.40 -1.5 85,445 - HMPREF1058_RS12525 0.40 -1.9 85,559 - HMPREF1058_RS12525 0.46 -1.6 85,626 - +1.4 86,060 - HMPREF1058_RS12525 0.76 -1.2 86,250 - HMPREF1058_RS12525 0.87 +0.0 86,531 - -0.4 86,542 - -0.8 86,555 - +0.2 86,585 - -0.1 86,627 + -3.4 86,630 - -1.7 86,630 - +0.2 86,643 + -1.3 86,644 - -0.5 86,688 + -1.1 86,688 + -1.7 86,716 + HMPREF1058_RS12520 0.10 +1.4 86,717 - +1.4 86,727 + HMPREF1058_RS12520 0.11 -0.3 86,727 + HMPREF1058_RS12520 0.11 +1.1 86,727 + HMPREF1058_RS12520 0.11 -0.0 86,728 - HMPREF1058_RS12520 0.11 +0.2 86,743 - HMPREF1058_RS12520 0.12 -1.0 86,768 + HMPREF1058_RS12520 0.13 +0.1 86,768 + HMPREF1058_RS12520 0.13 -0.6 86,768 + HMPREF1058_RS12520 0.13 -0.3 86,768 + HMPREF1058_RS12520 0.13 -0.2 86,769 - HMPREF1058_RS12520 0.13 -1.2 86,769 - HMPREF1058_RS12520 0.13 +1.2 86,814 + HMPREF1058_RS12520 0.16 -0.6 86,814 + HMPREF1058_RS12520 0.16 -1.1 86,814 + HMPREF1058_RS12520 0.16 -0.4 86,864 + HMPREF1058_RS12520 0.19 -0.0 86,917 + HMPREF1058_RS12520 0.22 -0.8 86,918 - HMPREF1058_RS12520 0.22 -0.7 87,056 + HMPREF1058_RS12520 0.30 -0.8 87,065 + HMPREF1058_RS12520 0.31 -1.6 87,066 - HMPREF1058_RS12520 0.31 -0.7 87,066 - HMPREF1058_RS12520 0.31 +0.6 87,068 + HMPREF1058_RS12520 0.31 +1.0 87,070 + HMPREF1058_RS12520 0.31 -0.3 87,092 + HMPREF1058_RS12520 0.33 +0.3 87,124 + -1.2 87,149 - HMPREF1058_RS12520 0.36 -0.6 87,156 - HMPREF1058_RS12520 0.36 +0.1 87,433 + HMPREF1058_RS12520 0.53 -0.5
Or see this region's nucleotide sequence