Experiment: pyrophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11940 and HMPREF1058_RS11935 overlap by 1 nucleotides HMPREF1058_RS11935 and HMPREF1058_RS11930 are separated by 172 nucleotides HMPREF1058_RS11930 and HMPREF1058_RS11925 are separated by 8 nucleotides HMPREF1058_RS11925 and HMPREF1058_RS11920 are separated by 16 nucleotides
HMPREF1058_RS11940: HMPREF1058_RS11940 - DUF3836 domain-containing protein, at 241,439 to 241,861
_RS11940
HMPREF1058_RS11935: HMPREF1058_RS11935 - hypothetical protein, at 241,861 to 242,160
_RS11935
HMPREF1058_RS11930: HMPREF1058_RS11930 - CPBP family intramembrane metalloprotease, at 242,333 to 243,163
_RS11930
HMPREF1058_RS11925: HMPREF1058_RS11925 - DUF2975 domain-containing protein, at 243,172 to 243,801
_RS11925
HMPREF1058_RS11920: HMPREF1058_RS11920 - DUF2975 domain-containing protein, at 243,818 to 244,465
_RS11920
Position (kb) 242
243
244 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 241.434 kb on + strand at 241.486 kb on - strand, within HMPREF1058_RS11940 at 241.502 kb on - strand, within HMPREF1058_RS11940 at 241.538 kb on + strand, within HMPREF1058_RS11940 at 241.539 kb on - strand, within HMPREF1058_RS11940 at 241.539 kb on - strand, within HMPREF1058_RS11940 at 241.574 kb on + strand, within HMPREF1058_RS11940 at 241.804 kb on + strand, within HMPREF1058_RS11940 at 241.930 kb on + strand, within HMPREF1058_RS11935 at 241.934 kb on + strand, within HMPREF1058_RS11935 at 241.935 kb on - strand, within HMPREF1058_RS11935 at 241.967 kb on + strand, within HMPREF1058_RS11935 at 241.997 kb on + strand, within HMPREF1058_RS11935 at 242.076 kb on + strand, within HMPREF1058_RS11935 at 242.108 kb on + strand, within HMPREF1058_RS11935 at 242.119 kb on + strand, within HMPREF1058_RS11935 at 242.120 kb on - strand, within HMPREF1058_RS11935 at 242.329 kb on + strand at 242.329 kb on + strand at 242.348 kb on - strand at 242.355 kb on + strand at 242.355 kb on + strand at 242.467 kb on - strand, within HMPREF1058_RS11930 at 242.477 kb on - strand, within HMPREF1058_RS11930 at 242.545 kb on + strand, within HMPREF1058_RS11930 at 242.584 kb on - strand, within HMPREF1058_RS11930 at 242.874 kb on + strand, within HMPREF1058_RS11930 at 242.875 kb on - strand, within HMPREF1058_RS11930 at 242.916 kb on - strand, within HMPREF1058_RS11930 at 242.936 kb on - strand, within HMPREF1058_RS11930 at 242.961 kb on + strand, within HMPREF1058_RS11930 at 242.966 kb on - strand, within HMPREF1058_RS11930 at 242.993 kb on - strand, within HMPREF1058_RS11930 at 243.053 kb on + strand, within HMPREF1058_RS11930 at 243.096 kb on - strand at 243.096 kb on - strand at 243.096 kb on - strand at 243.161 kb on + strand at 243.161 kb on + strand at 243.162 kb on - strand at 243.165 kb on + strand at 243.165 kb on + strand at 243.166 kb on - strand at 243.166 kb on - strand at 243.166 kb on - strand at 243.168 kb on - strand at 243.229 kb on - strand at 243.229 kb on - strand at 243.232 kb on + strand at 243.232 kb on + strand at 243.233 kb on - strand at 243.372 kb on - strand, within HMPREF1058_RS11925 at 243.394 kb on + strand, within HMPREF1058_RS11925 at 243.409 kb on - strand, within HMPREF1058_RS11925 at 243.612 kb on + strand, within HMPREF1058_RS11925 at 243.853 kb on + strand at 243.856 kb on - strand at 243.931 kb on + strand, within HMPREF1058_RS11920 at 243.932 kb on - strand, within HMPREF1058_RS11920 at 243.932 kb on - strand, within HMPREF1058_RS11920 at 243.948 kb on + strand, within HMPREF1058_RS11920 at 243.949 kb on - strand, within HMPREF1058_RS11920 at 243.949 kb on - strand, within HMPREF1058_RS11920 at 243.950 kb on + strand, within HMPREF1058_RS11920 at 243.970 kb on + strand, within HMPREF1058_RS11920 at 243.970 kb on + strand, within HMPREF1058_RS11920 at 244.025 kb on - strand, within HMPREF1058_RS11920 at 244.071 kb on - strand, within HMPREF1058_RS11920 at 244.087 kb on - strand, within HMPREF1058_RS11920
Per-strain Table
Position Strand Gene LocusTag Fraction pyrophosphate 1 mM phosphorus source remove 241,434 + -0.5 241,486 - HMPREF1058_RS11940 0.11 -3.3 241,502 - HMPREF1058_RS11940 0.15 -1.8 241,538 + HMPREF1058_RS11940 0.23 +0.5 241,539 - HMPREF1058_RS11940 0.24 -3.0 241,539 - HMPREF1058_RS11940 0.24 +0.0 241,574 + HMPREF1058_RS11940 0.32 +1.1 241,804 + HMPREF1058_RS11940 0.86 +1.4 241,930 + HMPREF1058_RS11935 0.23 -0.3 241,934 + HMPREF1058_RS11935 0.24 +0.3 241,935 - HMPREF1058_RS11935 0.25 -1.0 241,967 + HMPREF1058_RS11935 0.35 -0.4 241,997 + HMPREF1058_RS11935 0.45 -2.1 242,076 + HMPREF1058_RS11935 0.72 +0.5 242,108 + HMPREF1058_RS11935 0.82 -0.0 242,119 + HMPREF1058_RS11935 0.86 +0.3 242,120 - HMPREF1058_RS11935 0.86 -1.4 242,329 + +0.3 242,329 + -0.1 242,348 - -0.1 242,355 + -0.4 242,355 + -1.6 242,467 - HMPREF1058_RS11930 0.16 -1.6 242,477 - HMPREF1058_RS11930 0.17 -2.4 242,545 + HMPREF1058_RS11930 0.26 -1.8 242,584 - HMPREF1058_RS11930 0.30 -0.5 242,874 + HMPREF1058_RS11930 0.65 -1.4 242,875 - HMPREF1058_RS11930 0.65 -1.0 242,916 - HMPREF1058_RS11930 0.70 -1.3 242,936 - HMPREF1058_RS11930 0.73 -0.7 242,961 + HMPREF1058_RS11930 0.76 -0.1 242,966 - HMPREF1058_RS11930 0.76 -1.6 242,993 - HMPREF1058_RS11930 0.79 -3.5 243,053 + HMPREF1058_RS11930 0.87 -3.2 243,096 - +1.2 243,096 - +0.4 243,096 - -1.6 243,161 + -1.1 243,161 + -1.1 243,162 - +0.5 243,165 + -0.5 243,165 + -2.1 243,166 - +0.4 243,166 - +0.1 243,166 - -0.3 243,168 - -0.1 243,229 - -0.0 243,229 - -0.5 243,232 + -1.7 243,232 + -2.7 243,233 - -0.2 243,372 - HMPREF1058_RS11925 0.32 -1.1 243,394 + HMPREF1058_RS11925 0.35 -2.1 243,409 - HMPREF1058_RS11925 0.38 +0.6 243,612 + HMPREF1058_RS11925 0.70 -0.5 243,853 + -1.8 243,856 - +0.1 243,931 + HMPREF1058_RS11920 0.17 -1.8 243,932 - HMPREF1058_RS11920 0.18 +0.3 243,932 - HMPREF1058_RS11920 0.18 -1.6 243,948 + HMPREF1058_RS11920 0.20 -0.6 243,949 - HMPREF1058_RS11920 0.20 -0.1 243,949 - HMPREF1058_RS11920 0.20 -0.1 243,950 + HMPREF1058_RS11920 0.20 -1.1 243,970 + HMPREF1058_RS11920 0.23 -1.5 243,970 + HMPREF1058_RS11920 0.23 -2.5 244,025 - HMPREF1058_RS11920 0.32 +1.3 244,071 - HMPREF1058_RS11920 0.39 +0.4 244,087 - HMPREF1058_RS11920 0.42 +0.9
Or see this region's nucleotide sequence