Experiment: pyrophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10835 and HMPREF1058_RS10830 are separated by 2 nucleotides HMPREF1058_RS10830 and HMPREF1058_RS10825 are separated by 0 nucleotides HMPREF1058_RS10825 and HMPREF1058_RS10820 are separated by 104 nucleotides
HMPREF1058_RS10835: HMPREF1058_RS10835 - UDP-galactopyranose mutase, at 551,106 to 552,212
_RS10835
HMPREF1058_RS10830: HMPREF1058_RS10830 - lysophospholipid acyltransferase family protein, at 552,215 to 553,138
_RS10830
HMPREF1058_RS10825: HMPREF1058_RS10825 - glycosyltransferase family 9 protein, at 553,139 to 554,170
_RS10825
HMPREF1058_RS10820: HMPREF1058_RS10820 - 4-phosphoerythronate dehydrogenase PdxB, at 554,275 to 555,300
_RS10820
Position (kb) 553
554
555 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 552.186 kb on + strand at 552.187 kb on - strand at 552.196 kb on + strand at 553.167 kb on - strand at 553.214 kb on - strand at 553.263 kb on - strand, within HMPREF1058_RS10825 at 553.269 kb on - strand, within HMPREF1058_RS10825 at 553.679 kb on - strand, within HMPREF1058_RS10825 at 553.734 kb on - strand, within HMPREF1058_RS10825 at 553.734 kb on - strand, within HMPREF1058_RS10825 at 553.734 kb on - strand, within HMPREF1058_RS10825 at 553.734 kb on - strand, within HMPREF1058_RS10825 at 553.951 kb on - strand, within HMPREF1058_RS10825 at 553.951 kb on - strand, within HMPREF1058_RS10825 at 553.951 kb on - strand, within HMPREF1058_RS10825 at 553.951 kb on - strand, within HMPREF1058_RS10825 at 554.012 kb on - strand, within HMPREF1058_RS10825 at 554.051 kb on - strand, within HMPREF1058_RS10825 at 554.055 kb on - strand, within HMPREF1058_RS10825 at 554.154 kb on - strand at 554.171 kb on - strand at 554.171 kb on - strand at 554.226 kb on - strand at 554.245 kb on + strand at 554.246 kb on - strand at 554.288 kb on + strand at 554.308 kb on - strand at 554.308 kb on - strand at 554.309 kb on + strand at 554.309 kb on + strand at 554.309 kb on + strand at 554.309 kb on + strand at 554.348 kb on - strand at 554.490 kb on + strand, within HMPREF1058_RS10820 at 554.490 kb on + strand, within HMPREF1058_RS10820 at 554.490 kb on + strand, within HMPREF1058_RS10820 at 554.503 kb on + strand, within HMPREF1058_RS10820 at 554.570 kb on - strand, within HMPREF1058_RS10820 at 554.586 kb on - strand, within HMPREF1058_RS10820 at 554.589 kb on - strand, within HMPREF1058_RS10820 at 554.782 kb on - strand, within HMPREF1058_RS10820 at 554.783 kb on + strand, within HMPREF1058_RS10820 at 554.784 kb on - strand, within HMPREF1058_RS10820 at 554.784 kb on - strand, within HMPREF1058_RS10820 at 554.784 kb on - strand, within HMPREF1058_RS10820 at 554.881 kb on - strand, within HMPREF1058_RS10820 at 554.906 kb on + strand, within HMPREF1058_RS10820 at 554.907 kb on - strand, within HMPREF1058_RS10820 at 554.907 kb on - strand, within HMPREF1058_RS10820 at 554.910 kb on - strand, within HMPREF1058_RS10820 at 554.970 kb on + strand, within HMPREF1058_RS10820 at 554.970 kb on + strand, within HMPREF1058_RS10820 at 555.036 kb on + strand, within HMPREF1058_RS10820 at 555.037 kb on - strand, within HMPREF1058_RS10820 at 555.037 kb on - strand, within HMPREF1058_RS10820 at 555.038 kb on + strand, within HMPREF1058_RS10820 at 555.047 kb on - strand, within HMPREF1058_RS10820 at 555.100 kb on - strand, within HMPREF1058_RS10820 at 555.112 kb on - strand, within HMPREF1058_RS10820 at 555.131 kb on + strand, within HMPREF1058_RS10820 at 555.152 kb on - strand, within HMPREF1058_RS10820 at 555.153 kb on + strand, within HMPREF1058_RS10820 at 555.154 kb on - strand, within HMPREF1058_RS10820 at 555.161 kb on - strand, within HMPREF1058_RS10820
Per-strain Table
Position Strand Gene LocusTag Fraction pyrophosphate 1 mM phosphorus source remove 552,186 + +1.6 552,187 - -0.0 552,196 + +1.5 553,167 - +0.1 553,214 - -1.5 553,263 - HMPREF1058_RS10825 0.12 -3.4 553,269 - HMPREF1058_RS10825 0.13 -0.8 553,679 - HMPREF1058_RS10825 0.52 -3.3 553,734 - HMPREF1058_RS10825 0.58 -0.7 553,734 - HMPREF1058_RS10825 0.58 +1.0 553,734 - HMPREF1058_RS10825 0.58 -2.3 553,734 - HMPREF1058_RS10825 0.58 -2.4 553,951 - HMPREF1058_RS10825 0.79 -0.8 553,951 - HMPREF1058_RS10825 0.79 -1.9 553,951 - HMPREF1058_RS10825 0.79 -1.1 553,951 - HMPREF1058_RS10825 0.79 -1.2 554,012 - HMPREF1058_RS10825 0.85 -2.7 554,051 - HMPREF1058_RS10825 0.88 -1.8 554,055 - HMPREF1058_RS10825 0.89 -2.8 554,154 - -0.9 554,171 - -2.4 554,171 - +2.3 554,226 - +2.3 554,245 + -0.2 554,246 - -3.0 554,288 + -4.2 554,308 - -3.5 554,308 - -2.7 554,309 + -3.2 554,309 + -2.4 554,309 + -1.4 554,309 + -3.1 554,348 - -2.1 554,490 + HMPREF1058_RS10820 0.21 -4.5 554,490 + HMPREF1058_RS10820 0.21 -2.2 554,490 + HMPREF1058_RS10820 0.21 -2.5 554,503 + HMPREF1058_RS10820 0.22 -3.9 554,570 - HMPREF1058_RS10820 0.29 -1.4 554,586 - HMPREF1058_RS10820 0.30 -2.5 554,589 - HMPREF1058_RS10820 0.31 -2.1 554,782 - HMPREF1058_RS10820 0.49 -2.4 554,783 + HMPREF1058_RS10820 0.50 -1.5 554,784 - HMPREF1058_RS10820 0.50 -3.8 554,784 - HMPREF1058_RS10820 0.50 -3.3 554,784 - HMPREF1058_RS10820 0.50 -2.3 554,881 - HMPREF1058_RS10820 0.59 -3.7 554,906 + HMPREF1058_RS10820 0.62 -2.6 554,907 - HMPREF1058_RS10820 0.62 -2.4 554,907 - HMPREF1058_RS10820 0.62 -2.7 554,910 - HMPREF1058_RS10820 0.62 -3.7 554,970 + HMPREF1058_RS10820 0.68 -2.8 554,970 + HMPREF1058_RS10820 0.68 -1.3 555,036 + HMPREF1058_RS10820 0.74 -3.5 555,037 - HMPREF1058_RS10820 0.74 -3.2 555,037 - HMPREF1058_RS10820 0.74 -3.8 555,038 + HMPREF1058_RS10820 0.74 -2.7 555,047 - HMPREF1058_RS10820 0.75 -1.9 555,100 - HMPREF1058_RS10820 0.80 -3.3 555,112 - HMPREF1058_RS10820 0.82 -4.1 555,131 + HMPREF1058_RS10820 0.83 -2.4 555,152 - HMPREF1058_RS10820 0.85 -4.5 555,153 + HMPREF1058_RS10820 0.86 -2.1 555,154 - HMPREF1058_RS10820 0.86 -3.3 555,161 - HMPREF1058_RS10820 0.86 -1.8
Or see this region's nucleotide sequence