Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10485

Experiment: pyrophosphate 1 mM phosphorus source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS10495 and HMPREF1058_RS10490 overlap by 20 nucleotidesHMPREF1058_RS10490 and HMPREF1058_RS10485 are separated by 3 nucleotidesHMPREF1058_RS10485 and HMPREF1058_RS10480 are separated by 26 nucleotides HMPREF1058_RS10495: HMPREF1058_RS10495 - rhomboid family intramembrane serine protease, at 654,520 to 655,197 _RS10495 HMPREF1058_RS10490: HMPREF1058_RS10490 - rhomboid family intramembrane serine protease, at 655,178 to 656,071 _RS10490 HMPREF1058_RS10485: HMPREF1058_RS10485 - endonuclease/exonuclease/phosphatase family protein, at 656,075 to 657,154 _RS10485 HMPREF1058_RS10480: HMPREF1058_RS10480 - M3 family metallopeptidase, at 657,181 to 659,268 _RS10480 Position (kb) 656 657 658Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 655.145 kb on + strandat 655.173 kb on + strandat 655.190 kb on - strandat 655.190 kb on - strandat 655.228 kb on - strandat 655.229 kb on + strandat 655.229 kb on + strandat 655.230 kb on - strandat 655.230 kb on - strandat 655.231 kb on + strandat 655.242 kb on + strandat 655.242 kb on + strandat 655.244 kb on + strandat 655.246 kb on + strandat 655.246 kb on + strandat 655.246 kb on + strandat 655.247 kb on - strandat 655.247 kb on - strandat 655.261 kb on - strandat 655.270 kb on - strand, within HMPREF1058_RS10490at 655.331 kb on + strand, within HMPREF1058_RS10490at 655.331 kb on + strand, within HMPREF1058_RS10490at 655.390 kb on + strand, within HMPREF1058_RS10490at 655.391 kb on + strand, within HMPREF1058_RS10490at 655.391 kb on + strand, within HMPREF1058_RS10490at 655.392 kb on - strand, within HMPREF1058_RS10490at 655.393 kb on + strand, within HMPREF1058_RS10490at 655.432 kb on + strand, within HMPREF1058_RS10490at 655.503 kb on - strand, within HMPREF1058_RS10490at 655.516 kb on + strand, within HMPREF1058_RS10490at 655.537 kb on + strand, within HMPREF1058_RS10490at 655.547 kb on + strand, within HMPREF1058_RS10490at 655.581 kb on - strand, within HMPREF1058_RS10490at 655.589 kb on + strand, within HMPREF1058_RS10490at 655.589 kb on + strand, within HMPREF1058_RS10490at 655.656 kb on - strand, within HMPREF1058_RS10490at 655.657 kb on + strand, within HMPREF1058_RS10490at 655.669 kb on + strand, within HMPREF1058_RS10490at 655.698 kb on - strand, within HMPREF1058_RS10490at 655.698 kb on - strand, within HMPREF1058_RS10490at 655.831 kb on + strand, within HMPREF1058_RS10490at 655.831 kb on + strand, within HMPREF1058_RS10490at 655.831 kb on + strand, within HMPREF1058_RS10490at 655.832 kb on - strand, within HMPREF1058_RS10490at 655.832 kb on - strand, within HMPREF1058_RS10490at 655.832 kb on - strand, within HMPREF1058_RS10490at 655.946 kb on + strand, within HMPREF1058_RS10490at 655.947 kb on - strand, within HMPREF1058_RS10490at 655.949 kb on - strand, within HMPREF1058_RS10490at 655.949 kb on - strand, within HMPREF1058_RS10490at 655.981 kb on - strand, within HMPREF1058_RS10490at 655.987 kb on + strandat 655.987 kb on + strandat 656.017 kb on + strandat 656.072 kb on + strandat 656.073 kb on - strandat 656.074 kb on + strandat 656.081 kb on + strandat 656.081 kb on + strandat 656.082 kb on - strandat 656.084 kb on - strandat 656.107 kb on - strandat 656.109 kb on + strandat 656.119 kb on - strandat 656.129 kb on - strandat 656.129 kb on - strandat 656.149 kb on - strandat 656.149 kb on - strandat 656.165 kb on + strandat 656.165 kb on + strandat 656.165 kb on + strandat 656.166 kb on - strandat 656.166 kb on - strandat 656.167 kb on + strandat 656.167 kb on + strandat 656.168 kb on - strandat 656.168 kb on - strandat 656.191 kb on - strand, within HMPREF1058_RS10485at 656.273 kb on - strand, within HMPREF1058_RS10485at 656.327 kb on - strand, within HMPREF1058_RS10485at 656.346 kb on + strand, within HMPREF1058_RS10485at 656.346 kb on + strand, within HMPREF1058_RS10485at 656.346 kb on + strand, within HMPREF1058_RS10485at 656.347 kb on - strand, within HMPREF1058_RS10485at 656.352 kb on + strand, within HMPREF1058_RS10485at 656.390 kb on + strand, within HMPREF1058_RS10485at 656.390 kb on + strand, within HMPREF1058_RS10485at 656.391 kb on - strand, within HMPREF1058_RS10485at 656.460 kb on + strand, within HMPREF1058_RS10485at 656.479 kb on + strand, within HMPREF1058_RS10485at 656.481 kb on + strand, within HMPREF1058_RS10485at 656.481 kb on + strand, within HMPREF1058_RS10485at 656.498 kb on + strand, within HMPREF1058_RS10485at 656.498 kb on + strand, within HMPREF1058_RS10485at 656.500 kb on + strand, within HMPREF1058_RS10485at 656.500 kb on + strand, within HMPREF1058_RS10485at 656.558 kb on + strand, within HMPREF1058_RS10485at 656.559 kb on - strand, within HMPREF1058_RS10485at 656.559 kb on - strand, within HMPREF1058_RS10485at 656.572 kb on + strand, within HMPREF1058_RS10485at 656.572 kb on + strand, within HMPREF1058_RS10485at 656.573 kb on - strand, within HMPREF1058_RS10485at 656.573 kb on - strandat 656.573 kb on - strand, within HMPREF1058_RS10485at 656.617 kb on + strand, within HMPREF1058_RS10485at 656.642 kb on + strand, within HMPREF1058_RS10485at 656.673 kb on - strand, within HMPREF1058_RS10485at 656.675 kb on - strand, within HMPREF1058_RS10485at 656.711 kb on - strand, within HMPREF1058_RS10485at 656.713 kb on + strand, within HMPREF1058_RS10485at 656.847 kb on + strand, within HMPREF1058_RS10485at 656.847 kb on + strand, within HMPREF1058_RS10485at 656.847 kb on + strand, within HMPREF1058_RS10485at 656.848 kb on - strand, within HMPREF1058_RS10485at 656.907 kb on + strand, within HMPREF1058_RS10485at 656.913 kb on + strand, within HMPREF1058_RS10485at 656.914 kb on - strand, within HMPREF1058_RS10485at 656.939 kb on - strand, within HMPREF1058_RS10485at 656.939 kb on - strand, within HMPREF1058_RS10485at 656.945 kb on + strand, within HMPREF1058_RS10485at 656.945 kb on + strand, within HMPREF1058_RS10485at 656.946 kb on - strand, within HMPREF1058_RS10485at 656.946 kb on - strand, within HMPREF1058_RS10485at 656.946 kb on - strand, within HMPREF1058_RS10485at 657.017 kb on + strand, within HMPREF1058_RS10485at 657.017 kb on + strand, within HMPREF1058_RS10485at 657.018 kb on - strand, within HMPREF1058_RS10485at 657.019 kb on + strand, within HMPREF1058_RS10485at 657.019 kb on + strand, within HMPREF1058_RS10485at 657.020 kb on - strand, within HMPREF1058_RS10485at 657.052 kb on + strandat 657.097 kb on + strandat 657.100 kb on + strandat 657.100 kb on + strandat 657.100 kb on + strandat 657.101 kb on - strandat 657.101 kb on - strandat 657.137 kb on + strandat 657.138 kb on - strandat 657.159 kb on - strandat 657.163 kb on - strandat 657.169 kb on - strandat 657.194 kb on + strandat 657.280 kb on + strandat 657.319 kb on + strandat 657.344 kb on + strandat 657.374 kb on + strandat 657.374 kb on + strandat 657.374 kb on + strandat 657.452 kb on + strand, within HMPREF1058_RS10480at 657.452 kb on + strand, within HMPREF1058_RS10480at 657.453 kb on - strand, within HMPREF1058_RS10480at 657.453 kb on - strand, within HMPREF1058_RS10480at 657.544 kb on - strand, within HMPREF1058_RS10480at 657.553 kb on - strand, within HMPREF1058_RS10480at 657.556 kb on + strand, within HMPREF1058_RS10480at 657.574 kb on + strand, within HMPREF1058_RS10480at 657.615 kb on + strand, within HMPREF1058_RS10480at 657.616 kb on - strand, within HMPREF1058_RS10480at 657.621 kb on - strand, within HMPREF1058_RS10480at 657.658 kb on + strand, within HMPREF1058_RS10480at 657.658 kb on + strand, within HMPREF1058_RS10480at 657.658 kb on + strand, within HMPREF1058_RS10480at 657.659 kb on - strand, within HMPREF1058_RS10480at 657.659 kb on - strand, within HMPREF1058_RS10480at 657.661 kb on + strand, within HMPREF1058_RS10480at 657.661 kb on + strand, within HMPREF1058_RS10480at 657.662 kb on - strand, within HMPREF1058_RS10480at 657.663 kb on + strand, within HMPREF1058_RS10480at 657.768 kb on + strand, within HMPREF1058_RS10480at 657.768 kb on + strand, within HMPREF1058_RS10480at 657.774 kb on - strand, within HMPREF1058_RS10480at 657.783 kb on + strand, within HMPREF1058_RS10480at 657.970 kb on + strand, within HMPREF1058_RS10480at 657.979 kb on + strand, within HMPREF1058_RS10480at 657.979 kb on + strand, within HMPREF1058_RS10480at 657.982 kb on - strand, within HMPREF1058_RS10480at 657.982 kb on - strand, within HMPREF1058_RS10480at 658.017 kb on + strand, within HMPREF1058_RS10480

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Per-strain Table

Position Strand Gene LocusTag Fraction pyrophosphate 1 mM phosphorus source
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655,145 + +0.8
655,173 + -0.2
655,190 - -3.3
655,190 - -0.6
655,228 - +0.4
655,229 + -0.6
655,229 + -1.4
655,230 - -2.9
655,230 - -0.0
655,231 + -0.7
655,242 + -3.2
655,242 + -0.7
655,244 + -1.3
655,246 + +0.4
655,246 + -0.3
655,246 + -1.9
655,247 - -0.9
655,247 - -2.6
655,261 - -1.2
655,270 - HMPREF1058_RS10490 0.10 -2.5
655,331 + HMPREF1058_RS10490 0.17 -3.3
655,331 + HMPREF1058_RS10490 0.17 -0.9
655,390 + HMPREF1058_RS10490 0.24 -0.4
655,391 + HMPREF1058_RS10490 0.24 +1.2
655,391 + HMPREF1058_RS10490 0.24 -0.5
655,392 - HMPREF1058_RS10490 0.24 -0.2
655,393 + HMPREF1058_RS10490 0.24 -1.2
655,432 + HMPREF1058_RS10490 0.28 +1.0
655,503 - HMPREF1058_RS10490 0.36 -4.0
655,516 + HMPREF1058_RS10490 0.38 -2.1
655,537 + HMPREF1058_RS10490 0.40 -0.1
655,547 + HMPREF1058_RS10490 0.41 -1.9
655,581 - HMPREF1058_RS10490 0.45 -2.6
655,589 + HMPREF1058_RS10490 0.46 -1.4
655,589 + HMPREF1058_RS10490 0.46 -0.8
655,656 - HMPREF1058_RS10490 0.53 -1.9
655,657 + HMPREF1058_RS10490 0.54 -1.4
655,669 + HMPREF1058_RS10490 0.55 -2.3
655,698 - HMPREF1058_RS10490 0.58 -1.9
655,698 - HMPREF1058_RS10490 0.58 -1.7
655,831 + HMPREF1058_RS10490 0.73 -0.9
655,831 + HMPREF1058_RS10490 0.73 -0.8
655,831 + HMPREF1058_RS10490 0.73 -1.3
655,832 - HMPREF1058_RS10490 0.73 -0.5
655,832 - HMPREF1058_RS10490 0.73 -0.0
655,832 - HMPREF1058_RS10490 0.73 -0.6
655,946 + HMPREF1058_RS10490 0.86 -0.6
655,947 - HMPREF1058_RS10490 0.86 -1.1
655,949 - HMPREF1058_RS10490 0.86 -1.1
655,949 - HMPREF1058_RS10490 0.86 -2.8
655,981 - HMPREF1058_RS10490 0.90 +0.2
655,987 + +0.5
655,987 + -0.4
656,017 + -1.4
656,072 + -2.0
656,073 - -2.7
656,074 + -0.0
656,081 + -1.5
656,081 + -3.5
656,082 - -0.9
656,084 - -2.8
656,107 - -2.6
656,109 + -1.2
656,119 - -1.4
656,129 - -1.2
656,129 - -0.4
656,149 - -2.1
656,149 - -1.8
656,165 + -1.4
656,165 + -1.8
656,165 + -0.9
656,166 - -1.8
656,166 - -0.8
656,167 + -1.2
656,167 + -2.2
656,168 - -0.7
656,168 - -1.4
656,191 - HMPREF1058_RS10485 0.11 -0.6
656,273 - HMPREF1058_RS10485 0.18 -0.4
656,327 - HMPREF1058_RS10485 0.23 -3.2
656,346 + HMPREF1058_RS10485 0.25 -1.7
656,346 + HMPREF1058_RS10485 0.25 -1.5
656,346 + HMPREF1058_RS10485 0.25 -3.7
656,347 - HMPREF1058_RS10485 0.25 -1.1
656,352 + HMPREF1058_RS10485 0.26 -1.8
656,390 + HMPREF1058_RS10485 0.29 -1.3
656,390 + HMPREF1058_RS10485 0.29 -0.8
656,391 - HMPREF1058_RS10485 0.29 -1.9
656,460 + HMPREF1058_RS10485 0.36 -2.6
656,479 + HMPREF1058_RS10485 0.37 -0.0
656,481 + HMPREF1058_RS10485 0.38 +0.5
656,481 + HMPREF1058_RS10485 0.38 -1.7
656,498 + HMPREF1058_RS10485 0.39 -1.6
656,498 + HMPREF1058_RS10485 0.39 -1.2
656,500 + HMPREF1058_RS10485 0.39 -1.6
656,500 + HMPREF1058_RS10485 0.39 -1.0
656,558 + HMPREF1058_RS10485 0.45 -2.4
656,559 - HMPREF1058_RS10485 0.45 -1.9
656,559 - HMPREF1058_RS10485 0.45 -1.7
656,572 + HMPREF1058_RS10485 0.46 -1.0
656,572 + HMPREF1058_RS10485 0.46 -0.9
656,573 - HMPREF1058_RS10485 0.46 -0.8
656,573 - -1.2
656,573 - HMPREF1058_RS10485 0.46 -0.5
656,617 + HMPREF1058_RS10485 0.50 -2.1
656,642 + HMPREF1058_RS10485 0.53 -1.6
656,673 - HMPREF1058_RS10485 0.55 -2.3
656,675 - HMPREF1058_RS10485 0.56 -1.2
656,711 - HMPREF1058_RS10485 0.59 -0.0
656,713 + HMPREF1058_RS10485 0.59 -0.0
656,847 + HMPREF1058_RS10485 0.71 -0.3
656,847 + HMPREF1058_RS10485 0.71 -3.1
656,847 + HMPREF1058_RS10485 0.71 -0.6
656,848 - HMPREF1058_RS10485 0.72 -1.7
656,907 + HMPREF1058_RS10485 0.77 -1.4
656,913 + HMPREF1058_RS10485 0.78 -1.3
656,914 - HMPREF1058_RS10485 0.78 -1.7
656,939 - HMPREF1058_RS10485 0.80 -1.2
656,939 - HMPREF1058_RS10485 0.80 -1.6
656,945 + HMPREF1058_RS10485 0.81 -1.3
656,945 + HMPREF1058_RS10485 0.81 -1.7
656,946 - HMPREF1058_RS10485 0.81 -0.6
656,946 - HMPREF1058_RS10485 0.81 -1.9
656,946 - HMPREF1058_RS10485 0.81 -0.8
657,017 + HMPREF1058_RS10485 0.87 -2.0
657,017 + HMPREF1058_RS10485 0.87 -1.6
657,018 - HMPREF1058_RS10485 0.87 -1.4
657,019 + HMPREF1058_RS10485 0.87 -1.7
657,019 + HMPREF1058_RS10485 0.87 -0.5
657,020 - HMPREF1058_RS10485 0.88 -1.3
657,052 + -1.8
657,097 + -2.2
657,100 + -1.7
657,100 + -1.1
657,100 + -1.5
657,101 - -2.0
657,101 - -0.9
657,137 + -2.0
657,138 - -1.1
657,159 - -1.6
657,163 - +0.1
657,169 - -1.1
657,194 + -1.6
657,280 + -1.6
657,319 + -0.6
657,344 + -1.3
657,374 + -1.0
657,374 + -1.9
657,374 + +0.2
657,452 + HMPREF1058_RS10480 0.13 +0.3
657,452 + HMPREF1058_RS10480 0.13 -1.8
657,453 - HMPREF1058_RS10480 0.13 -0.3
657,453 - HMPREF1058_RS10480 0.13 +0.3
657,544 - HMPREF1058_RS10480 0.17 -1.4
657,553 - HMPREF1058_RS10480 0.18 -1.0
657,556 + HMPREF1058_RS10480 0.18 -0.8
657,574 + HMPREF1058_RS10480 0.19 -0.7
657,615 + HMPREF1058_RS10480 0.21 +0.5
657,616 - HMPREF1058_RS10480 0.21 -0.1
657,621 - HMPREF1058_RS10480 0.21 +1.0
657,658 + HMPREF1058_RS10480 0.23 -0.7
657,658 + HMPREF1058_RS10480 0.23 +0.6
657,658 + HMPREF1058_RS10480 0.23 +0.3
657,659 - HMPREF1058_RS10480 0.23 -0.1
657,659 - HMPREF1058_RS10480 0.23 +0.4
657,661 + HMPREF1058_RS10480 0.23 -1.4
657,661 + HMPREF1058_RS10480 0.23 -3.1
657,662 - HMPREF1058_RS10480 0.23 -0.7
657,663 + HMPREF1058_RS10480 0.23 -0.1
657,768 + HMPREF1058_RS10480 0.28 -0.3
657,768 + HMPREF1058_RS10480 0.28 -1.3
657,774 - HMPREF1058_RS10480 0.28 -0.4
657,783 + HMPREF1058_RS10480 0.29 -1.7
657,970 + HMPREF1058_RS10480 0.38 -0.8
657,979 + HMPREF1058_RS10480 0.38 -1.1
657,979 + HMPREF1058_RS10480 0.38 -1.1
657,982 - HMPREF1058_RS10480 0.38 -0.1
657,982 - HMPREF1058_RS10480 0.38 -3.0
658,017 + HMPREF1058_RS10480 0.40 -0.1

Or see this region's nucleotide sequence