Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10255

Experiment: pyrophosphate 1 mM phosphorus source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS10270 and HMPREF1058_RS10265 overlap by 4 nucleotidesHMPREF1058_RS10265 and HMPREF1058_RS10260 are separated by 2 nucleotidesHMPREF1058_RS10260 and HMPREF1058_RS10255 are separated by 1 nucleotidesHMPREF1058_RS10255 and HMPREF1058_RS10250 are separated by 324 nucleotidesHMPREF1058_RS10250 and HMPREF1058_RS10245 are separated by 75 nucleotides HMPREF1058_RS10270: HMPREF1058_RS10270 - hypothetical protein, at 697,425 to 697,676 _RS10270 HMPREF1058_RS10265: HMPREF1058_RS10265 - hypothetical protein, at 697,673 to 697,891 _RS10265 HMPREF1058_RS10260: HMPREF1058_RS10260 - ADP-ribosylglycohydrolase family protein, at 697,894 to 698,658 _RS10260 HMPREF1058_RS10255: HMPREF1058_RS10255 - hypothetical protein, at 698,660 to 698,980 _RS10255 HMPREF1058_RS10250: HMPREF1058_RS10250 - hypothetical protein, at 699,305 to 699,862 _RS10250 HMPREF1058_RS10245: HMPREF1058_RS10245 - hypothetical protein, at 699,938 to 702,400 _RS10245 Position (kb) 698 699Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 697.724 kb on + strand, within HMPREF1058_RS10265at 697.785 kb on + strand, within HMPREF1058_RS10265at 697.898 kb on + strandat 697.910 kb on + strandat 697.911 kb on - strandat 697.923 kb on - strandat 698.001 kb on + strand, within HMPREF1058_RS10260at 698.002 kb on - strand, within HMPREF1058_RS10260at 698.139 kb on + strand, within HMPREF1058_RS10260at 698.153 kb on - strand, within HMPREF1058_RS10260at 698.154 kb on + strand, within HMPREF1058_RS10260at 698.157 kb on + strand, within HMPREF1058_RS10260at 698.221 kb on - strand, within HMPREF1058_RS10260at 698.279 kb on + strand, within HMPREF1058_RS10260at 698.365 kb on + strand, within HMPREF1058_RS10260at 698.365 kb on + strand, within HMPREF1058_RS10260at 698.373 kb on + strand, within HMPREF1058_RS10260at 698.373 kb on + strand, within HMPREF1058_RS10260at 698.374 kb on - strand, within HMPREF1058_RS10260at 698.374 kb on - strand, within HMPREF1058_RS10260at 698.374 kb on - strand, within HMPREF1058_RS10260at 698.395 kb on + strand, within HMPREF1058_RS10260at 698.436 kb on + strand, within HMPREF1058_RS10260at 698.451 kb on + strand, within HMPREF1058_RS10260at 698.451 kb on + strand, within HMPREF1058_RS10260at 698.517 kb on + strand, within HMPREF1058_RS10260at 698.529 kb on + strand, within HMPREF1058_RS10260at 698.530 kb on - strand, within HMPREF1058_RS10260at 698.541 kb on + strand, within HMPREF1058_RS10260at 698.541 kb on + strand, within HMPREF1058_RS10260at 698.542 kb on - strand, within HMPREF1058_RS10260at 698.553 kb on + strand, within HMPREF1058_RS10260at 698.611 kb on - strandat 698.624 kb on + strandat 698.635 kb on + strandat 698.641 kb on - strandat 698.652 kb on + strandat 698.652 kb on + strandat 698.656 kb on + strandat 698.656 kb on + strandat 698.669 kb on - strandat 698.764 kb on + strand, within HMPREF1058_RS10255at 698.822 kb on + strand, within HMPREF1058_RS10255at 698.864 kb on + strand, within HMPREF1058_RS10255at 698.864 kb on + strand, within HMPREF1058_RS10255at 698.865 kb on - strand, within HMPREF1058_RS10255at 698.890 kb on - strand, within HMPREF1058_RS10255at 698.978 kb on + strandat 698.978 kb on + strandat 698.979 kb on - strandat 699.015 kb on + strandat 699.041 kb on - strandat 699.044 kb on + strandat 699.045 kb on - strandat 699.052 kb on + strandat 699.053 kb on - strandat 699.084 kb on - strandat 699.085 kb on + strandat 699.086 kb on - strandat 699.155 kb on + strandat 699.259 kb on - strandat 699.282 kb on + strandat 699.293 kb on - strandat 699.305 kb on - strandat 699.316 kb on - strandat 699.371 kb on + strand, within HMPREF1058_RS10250at 699.372 kb on + strand, within HMPREF1058_RS10250at 699.372 kb on - strand, within HMPREF1058_RS10250at 699.396 kb on + strand, within HMPREF1058_RS10250at 699.435 kb on - strand, within HMPREF1058_RS10250at 699.451 kb on + strand, within HMPREF1058_RS10250at 699.452 kb on - strand, within HMPREF1058_RS10250at 699.454 kb on + strand, within HMPREF1058_RS10250at 699.455 kb on - strand, within HMPREF1058_RS10250at 699.455 kb on - strand, within HMPREF1058_RS10250at 699.514 kb on + strand, within HMPREF1058_RS10250at 699.514 kb on + strand, within HMPREF1058_RS10250at 699.515 kb on - strand, within HMPREF1058_RS10250at 699.517 kb on + strand, within HMPREF1058_RS10250at 699.517 kb on + strand, within HMPREF1058_RS10250at 699.566 kb on - strand, within HMPREF1058_RS10250at 699.566 kb on - strand, within HMPREF1058_RS10250at 699.567 kb on + strand, within HMPREF1058_RS10250at 699.567 kb on + strand, within HMPREF1058_RS10250at 699.568 kb on - strand, within HMPREF1058_RS10250at 699.568 kb on - strand, within HMPREF1058_RS10250at 699.569 kb on + strand, within HMPREF1058_RS10250at 699.570 kb on - strand, within HMPREF1058_RS10250at 699.570 kb on - strand, within HMPREF1058_RS10250at 699.570 kb on - strand, within HMPREF1058_RS10250at 699.570 kb on - strand, within HMPREF1058_RS10250at 699.571 kb on + strand, within HMPREF1058_RS10250at 699.582 kb on + strand, within HMPREF1058_RS10250at 699.631 kb on - strand, within HMPREF1058_RS10250at 699.662 kb on - strand, within HMPREF1058_RS10250at 699.669 kb on + strand, within HMPREF1058_RS10250at 699.682 kb on - strand, within HMPREF1058_RS10250at 699.689 kb on + strand, within HMPREF1058_RS10250at 699.690 kb on - strand, within HMPREF1058_RS10250at 699.722 kb on + strand, within HMPREF1058_RS10250at 699.746 kb on + strand, within HMPREF1058_RS10250at 699.779 kb on + strand, within HMPREF1058_RS10250at 699.780 kb on - strand, within HMPREF1058_RS10250at 699.781 kb on + strand, within HMPREF1058_RS10250at 699.795 kb on + strand, within HMPREF1058_RS10250at 699.805 kb on + strand, within HMPREF1058_RS10250at 699.807 kb on + strandat 699.818 kb on + strandat 699.865 kb on + strandat 699.882 kb on + strandat 699.939 kb on + strandat 699.939 kb on + strandat 699.939 kb on + strandat 699.940 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyrophosphate 1 mM phosphorus source
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697,724 + HMPREF1058_RS10265 0.23 +1.4
697,785 + HMPREF1058_RS10265 0.51 -0.3
697,898 + -0.2
697,910 + -0.3
697,911 - -2.0
697,923 - -1.9
698,001 + HMPREF1058_RS10260 0.14 -0.3
698,002 - HMPREF1058_RS10260 0.14 -3.6
698,139 + HMPREF1058_RS10260 0.32 -0.1
698,153 - HMPREF1058_RS10260 0.34 -0.8
698,154 + HMPREF1058_RS10260 0.34 -0.4
698,157 + HMPREF1058_RS10260 0.34 -0.0
698,221 - HMPREF1058_RS10260 0.43 -3.0
698,279 + HMPREF1058_RS10260 0.50 +0.2
698,365 + HMPREF1058_RS10260 0.62 -0.9
698,365 + HMPREF1058_RS10260 0.62 -0.1
698,373 + HMPREF1058_RS10260 0.63 -0.5
698,373 + HMPREF1058_RS10260 0.63 -0.1
698,374 - HMPREF1058_RS10260 0.63 -2.8
698,374 - HMPREF1058_RS10260 0.63 -1.7
698,374 - HMPREF1058_RS10260 0.63 -2.8
698,395 + HMPREF1058_RS10260 0.65 -2.3
698,436 + HMPREF1058_RS10260 0.71 -0.3
698,451 + HMPREF1058_RS10260 0.73 -0.4
698,451 + HMPREF1058_RS10260 0.73 +1.4
698,517 + HMPREF1058_RS10260 0.81 -0.6
698,529 + HMPREF1058_RS10260 0.83 -1.5
698,530 - HMPREF1058_RS10260 0.83 -1.3
698,541 + HMPREF1058_RS10260 0.85 -1.0
698,541 + HMPREF1058_RS10260 0.85 -0.7
698,542 - HMPREF1058_RS10260 0.85 -1.6
698,553 + HMPREF1058_RS10260 0.86 -1.5
698,611 - -1.3
698,624 + +0.6
698,635 + +0.9
698,641 - -1.2
698,652 + -1.7
698,652 + -0.9
698,656 + -1.7
698,656 + -1.7
698,669 - -1.2
698,764 + HMPREF1058_RS10255 0.32 -2.2
698,822 + HMPREF1058_RS10255 0.50 -1.0
698,864 + HMPREF1058_RS10255 0.64 -0.5
698,864 + HMPREF1058_RS10255 0.64 -1.8
698,865 - HMPREF1058_RS10255 0.64 -2.7
698,890 - HMPREF1058_RS10255 0.72 -1.6
698,978 + +0.3
698,978 + +0.0
698,979 - +0.2
699,015 + +0.1
699,041 - -1.5
699,044 + -0.1
699,045 - +0.4
699,052 + -0.2
699,053 - -2.2
699,084 - +0.6
699,085 + +0.1
699,086 - +0.0
699,155 + -0.6
699,259 - +0.6
699,282 + -1.4
699,293 - -2.1
699,305 - +0.0
699,316 - -0.8
699,371 + HMPREF1058_RS10250 0.12 +0.6
699,372 + HMPREF1058_RS10250 0.12 -2.3
699,372 - HMPREF1058_RS10250 0.12 -0.4
699,396 + HMPREF1058_RS10250 0.16 -0.2
699,435 - HMPREF1058_RS10250 0.23 +0.2
699,451 + HMPREF1058_RS10250 0.26 +0.4
699,452 - HMPREF1058_RS10250 0.26 -0.1
699,454 + HMPREF1058_RS10250 0.27 +0.1
699,455 - HMPREF1058_RS10250 0.27 +0.1
699,455 - HMPREF1058_RS10250 0.27 +0.3
699,514 + HMPREF1058_RS10250 0.37 +0.3
699,514 + HMPREF1058_RS10250 0.37 +0.0
699,515 - HMPREF1058_RS10250 0.38 +0.0
699,517 + HMPREF1058_RS10250 0.38 +0.4
699,517 + HMPREF1058_RS10250 0.38 +0.0
699,566 - HMPREF1058_RS10250 0.47 -0.2
699,566 - HMPREF1058_RS10250 0.47 +0.8
699,567 + HMPREF1058_RS10250 0.47 +1.3
699,567 + HMPREF1058_RS10250 0.47 -1.1
699,568 - HMPREF1058_RS10250 0.47 +0.6
699,568 - HMPREF1058_RS10250 0.47 -0.2
699,569 + HMPREF1058_RS10250 0.47 -0.1
699,570 - HMPREF1058_RS10250 0.47 -0.4
699,570 - HMPREF1058_RS10250 0.47 -0.9
699,570 - HMPREF1058_RS10250 0.47 -0.8
699,570 - HMPREF1058_RS10250 0.47 -3.2
699,571 + HMPREF1058_RS10250 0.48 -0.4
699,582 + HMPREF1058_RS10250 0.50 -0.2
699,631 - HMPREF1058_RS10250 0.58 -0.3
699,662 - HMPREF1058_RS10250 0.64 -0.3
699,669 + HMPREF1058_RS10250 0.65 -0.1
699,682 - HMPREF1058_RS10250 0.68 +0.0
699,689 + HMPREF1058_RS10250 0.69 +0.1
699,690 - HMPREF1058_RS10250 0.69 -0.8
699,722 + HMPREF1058_RS10250 0.75 -1.4
699,746 + HMPREF1058_RS10250 0.79 -0.8
699,779 + HMPREF1058_RS10250 0.85 -0.6
699,780 - HMPREF1058_RS10250 0.85 +0.4
699,781 + HMPREF1058_RS10250 0.85 +1.1
699,795 + HMPREF1058_RS10250 0.88 +0.0
699,805 + HMPREF1058_RS10250 0.90 +0.4
699,807 + +0.3
699,818 + -0.2
699,865 + +0.6
699,882 + -0.3
699,939 + -0.1
699,939 + +2.9
699,939 + -0.2
699,940 - -0.2

Or see this region's nucleotide sequence