Experiment: pyrophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09720 and HMPREF1058_RS09715 are separated by 90 nucleotides HMPREF1058_RS09715 and HMPREF1058_RS09710 are separated by 22 nucleotides
HMPREF1058_RS09720: HMPREF1058_RS09720 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 810,591 to 812,396
_RS09720
HMPREF1058_RS09715: HMPREF1058_RS09715 - hypothetical protein, at 812,487 to 813,317
_RS09715
HMPREF1058_RS09710: HMPREF1058_RS09710 - acyltransferase, at 813,340 to 814,365
_RS09710
Position (kb) 812
813
814 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 811.542 kb on + strand, within HMPREF1058_RS09720 at 811.584 kb on + strand, within HMPREF1058_RS09720 at 811.699 kb on - strand, within HMPREF1058_RS09720 at 811.782 kb on + strand, within HMPREF1058_RS09720 at 811.783 kb on - strand, within HMPREF1058_RS09720 at 811.783 kb on - strand, within HMPREF1058_RS09720 at 811.793 kb on - strand, within HMPREF1058_RS09720 at 811.843 kb on + strand, within HMPREF1058_RS09720 at 811.844 kb on - strand, within HMPREF1058_RS09720 at 811.874 kb on + strand, within HMPREF1058_RS09720 at 811.881 kb on - strand, within HMPREF1058_RS09720 at 811.894 kb on + strand, within HMPREF1058_RS09720 at 811.897 kb on + strand, within HMPREF1058_RS09720 at 811.898 kb on - strand, within HMPREF1058_RS09720 at 811.898 kb on - strand, within HMPREF1058_RS09720 at 811.999 kb on + strand, within HMPREF1058_RS09720 at 811.999 kb on + strand, within HMPREF1058_RS09720 at 811.999 kb on + strand, within HMPREF1058_RS09720 at 812.000 kb on - strand, within HMPREF1058_RS09720 at 812.008 kb on - strand, within HMPREF1058_RS09720 at 812.058 kb on - strand, within HMPREF1058_RS09720 at 812.135 kb on - strand, within HMPREF1058_RS09720 at 812.138 kb on + strand, within HMPREF1058_RS09720 at 812.141 kb on + strand, within HMPREF1058_RS09720 at 812.218 kb on - strand at 812.239 kb on - strand at 812.250 kb on - strand at 812.346 kb on - strand at 812.380 kb on - strand at 812.399 kb on + strand at 812.411 kb on + strand at 812.412 kb on - strand at 812.413 kb on + strand at 812.413 kb on + strand at 812.414 kb on - strand at 812.414 kb on - strand at 812.414 kb on - strand at 812.414 kb on - strand at 812.414 kb on - strand at 812.414 kb on - strand at 812.416 kb on - strand at 812.430 kb on - strand at 812.445 kb on - strand at 812.457 kb on - strand at 812.463 kb on - strand at 812.585 kb on - strand, within HMPREF1058_RS09715 at 812.629 kb on - strand, within HMPREF1058_RS09715 at 812.647 kb on + strand, within HMPREF1058_RS09715 at 812.691 kb on + strand, within HMPREF1058_RS09715 at 812.786 kb on + strand, within HMPREF1058_RS09715 at 812.786 kb on + strand, within HMPREF1058_RS09715 at 812.860 kb on - strand, within HMPREF1058_RS09715 at 813.008 kb on + strand, within HMPREF1058_RS09715 at 813.190 kb on + strand, within HMPREF1058_RS09715 at 813.213 kb on + strand, within HMPREF1058_RS09715 at 813.214 kb on - strand, within HMPREF1058_RS09715 at 813.214 kb on - strand, within HMPREF1058_RS09715 at 813.214 kb on - strand, within HMPREF1058_RS09715 at 813.227 kb on + strand, within HMPREF1058_RS09715 at 813.227 kb on + strand, within HMPREF1058_RS09715 at 813.228 kb on - strand, within HMPREF1058_RS09715 at 813.238 kb on + strand at 813.283 kb on + strand at 813.443 kb on - strand, within HMPREF1058_RS09710 at 813.466 kb on - strand, within HMPREF1058_RS09710 at 813.500 kb on - strand, within HMPREF1058_RS09710 at 813.500 kb on - strand, within HMPREF1058_RS09710 at 813.525 kb on - strand, within HMPREF1058_RS09710 at 813.535 kb on + strand, within HMPREF1058_RS09710 at 813.567 kb on - strand, within HMPREF1058_RS09710 at 813.567 kb on - strand, within HMPREF1058_RS09710 at 813.567 kb on - strand, within HMPREF1058_RS09710 at 813.567 kb on - strand, within HMPREF1058_RS09710 at 813.667 kb on + strand, within HMPREF1058_RS09710 at 813.695 kb on - strand, within HMPREF1058_RS09710 at 813.718 kb on - strand, within HMPREF1058_RS09710 at 813.718 kb on - strand, within HMPREF1058_RS09710 at 813.735 kb on + strand, within HMPREF1058_RS09710 at 813.804 kb on - strand, within HMPREF1058_RS09710 at 813.815 kb on + strand, within HMPREF1058_RS09710 at 813.830 kb on + strand, within HMPREF1058_RS09710 at 813.849 kb on + strand, within HMPREF1058_RS09710 at 813.849 kb on + strand, within HMPREF1058_RS09710 at 814.003 kb on + strand at 814.004 kb on - strand, within HMPREF1058_RS09710 at 814.007 kb on + strand, within HMPREF1058_RS09710 at 814.007 kb on + strand, within HMPREF1058_RS09710 at 814.008 kb on - strand, within HMPREF1058_RS09710 at 814.074 kb on + strand, within HMPREF1058_RS09710 at 814.159 kb on - strand, within HMPREF1058_RS09710 at 814.185 kb on - strand, within HMPREF1058_RS09710 at 814.236 kb on + strand, within HMPREF1058_RS09710 at 814.237 kb on - strand, within HMPREF1058_RS09710 at 814.281 kb on + strand at 814.304 kb on - strand at 814.313 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyrophosphate 1 mM phosphorus source remove 811,542 + HMPREF1058_RS09720 0.53 +2.5 811,584 + HMPREF1058_RS09720 0.55 +2.6 811,699 - HMPREF1058_RS09720 0.61 -0.2 811,782 + HMPREF1058_RS09720 0.66 +1.7 811,783 - HMPREF1058_RS09720 0.66 -0.0 811,783 - HMPREF1058_RS09720 0.66 -0.1 811,793 - HMPREF1058_RS09720 0.67 +0.7 811,843 + HMPREF1058_RS09720 0.69 +1.6 811,844 - HMPREF1058_RS09720 0.69 -2.6 811,874 + HMPREF1058_RS09720 0.71 +2.8 811,881 - HMPREF1058_RS09720 0.71 -0.0 811,894 + HMPREF1058_RS09720 0.72 +2.9 811,897 + HMPREF1058_RS09720 0.72 +2.6 811,898 - HMPREF1058_RS09720 0.72 +0.6 811,898 - HMPREF1058_RS09720 0.72 +0.4 811,999 + HMPREF1058_RS09720 0.78 +2.3 811,999 + HMPREF1058_RS09720 0.78 +2.6 811,999 + HMPREF1058_RS09720 0.78 +3.0 812,000 - HMPREF1058_RS09720 0.78 -1.6 812,008 - HMPREF1058_RS09720 0.78 +0.6 812,058 - HMPREF1058_RS09720 0.81 +0.5 812,135 - HMPREF1058_RS09720 0.85 +0.4 812,138 + HMPREF1058_RS09720 0.86 +1.7 812,141 + HMPREF1058_RS09720 0.86 +3.0 812,218 - -0.0 812,239 - +0.5 812,250 - +0.5 812,346 - -0.4 812,380 - -0.2 812,399 + +1.7 812,411 + +2.3 812,412 - +2.4 812,413 + +3.2 812,413 + +3.1 812,414 - -0.1 812,414 - +0.1 812,414 - -0.4 812,414 - +0.3 812,414 - -0.8 812,414 - -0.0 812,416 - +0.9 812,430 - +0.6 812,445 - +2.1 812,457 - +0.6 812,463 - +2.6 812,585 - HMPREF1058_RS09715 0.12 +2.0 812,629 - HMPREF1058_RS09715 0.17 +3.8 812,647 + HMPREF1058_RS09715 0.19 +2.2 812,691 + HMPREF1058_RS09715 0.25 +1.3 812,786 + HMPREF1058_RS09715 0.36 +2.9 812,786 + HMPREF1058_RS09715 0.36 +2.0 812,860 - HMPREF1058_RS09715 0.45 +2.4 813,008 + HMPREF1058_RS09715 0.63 +2.9 813,190 + HMPREF1058_RS09715 0.85 +2.1 813,213 + HMPREF1058_RS09715 0.87 +0.9 813,214 - HMPREF1058_RS09715 0.87 +2.5 813,214 - HMPREF1058_RS09715 0.87 +2.0 813,214 - HMPREF1058_RS09715 0.87 +1.9 813,227 + HMPREF1058_RS09715 0.89 +2.0 813,227 + HMPREF1058_RS09715 0.89 +2.2 813,228 - HMPREF1058_RS09715 0.89 +1.9 813,238 + +2.2 813,283 + +1.9 813,443 - HMPREF1058_RS09710 0.10 +0.5 813,466 - HMPREF1058_RS09710 0.12 +0.3 813,500 - HMPREF1058_RS09710 0.16 +1.0 813,500 - HMPREF1058_RS09710 0.16 -1.1 813,525 - HMPREF1058_RS09710 0.18 +1.2 813,535 + HMPREF1058_RS09710 0.19 +0.5 813,567 - HMPREF1058_RS09710 0.22 +1.2 813,567 - HMPREF1058_RS09710 0.22 +0.1 813,567 - HMPREF1058_RS09710 0.22 +1.6 813,567 - HMPREF1058_RS09710 0.22 +0.4 813,667 + HMPREF1058_RS09710 0.32 +1.4 813,695 - HMPREF1058_RS09710 0.35 +1.0 813,718 - HMPREF1058_RS09710 0.37 +0.8 813,718 - HMPREF1058_RS09710 0.37 +1.0 813,735 + HMPREF1058_RS09710 0.38 +0.8 813,804 - HMPREF1058_RS09710 0.45 +0.6 813,815 + HMPREF1058_RS09710 0.46 -0.8 813,830 + HMPREF1058_RS09710 0.48 +0.4 813,849 + HMPREF1058_RS09710 0.50 -0.0 813,849 + HMPREF1058_RS09710 0.50 -1.5 814,003 + -0.2 814,004 - HMPREF1058_RS09710 0.65 +1.7 814,007 + HMPREF1058_RS09710 0.65 -2.7 814,007 + HMPREF1058_RS09710 0.65 +0.6 814,008 - HMPREF1058_RS09710 0.65 +0.7 814,074 + HMPREF1058_RS09710 0.72 -0.8 814,159 - HMPREF1058_RS09710 0.80 +1.1 814,185 - HMPREF1058_RS09710 0.82 +0.8 814,236 + HMPREF1058_RS09710 0.87 +0.5 814,237 - HMPREF1058_RS09710 0.87 -0.0 814,281 + +0.6 814,304 - +2.6 814,313 - +0.5
Or see this region's nucleotide sequence