Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07965

Experiment: pyrophosphate 1 mM phosphorus source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07975 and HMPREF1058_RS07970 are separated by 286 nucleotidesHMPREF1058_RS07970 and HMPREF1058_RS07965 overlap by 4 nucleotidesHMPREF1058_RS07965 and HMPREF1058_RS07960 are separated by 4 nucleotides HMPREF1058_RS07975: HMPREF1058_RS07975 - family 10 glycosylhydrolase, at 86,306 to 87,805 _RS07975 HMPREF1058_RS07970: HMPREF1058_RS07970 - chromate transporter, at 88,092 to 88,664 _RS07970 HMPREF1058_RS07965: HMPREF1058_RS07965 - chromate transporter, at 88,661 to 89,209 _RS07965 HMPREF1058_RS07960: HMPREF1058_RS07960 - response regulator, at 89,214 to 93,230 _RS07960 Position (kb) 88 89 90Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 87.705 kb on + strandat 87.706 kb on - strandat 87.711 kb on - strandat 87.738 kb on - strandat 87.863 kb on + strandat 87.863 kb on + strandat 87.864 kb on - strandat 87.865 kb on + strandat 87.941 kb on + strandat 87.941 kb on + strandat 87.941 kb on + strandat 87.943 kb on + strandat 87.944 kb on - strandat 88.004 kb on - strandat 88.008 kb on - strandat 88.125 kb on + strandat 88.125 kb on + strandat 88.126 kb on - strandat 88.134 kb on + strandat 88.140 kb on - strandat 88.167 kb on + strand, within HMPREF1058_RS07970at 88.167 kb on + strand, within HMPREF1058_RS07970at 88.168 kb on - strand, within HMPREF1058_RS07970at 88.194 kb on - strand, within HMPREF1058_RS07970at 88.218 kb on + strand, within HMPREF1058_RS07970at 88.282 kb on - strand, within HMPREF1058_RS07970at 88.362 kb on + strand, within HMPREF1058_RS07970at 88.363 kb on - strand, within HMPREF1058_RS07970at 88.369 kb on - strand, within HMPREF1058_RS07970at 88.400 kb on + strand, within HMPREF1058_RS07970at 88.400 kb on + strand, within HMPREF1058_RS07970at 88.405 kb on - strand, within HMPREF1058_RS07970at 88.405 kb on - strand, within HMPREF1058_RS07970at 88.419 kb on + strand, within HMPREF1058_RS07970at 88.422 kb on - strand, within HMPREF1058_RS07970at 88.439 kb on - strand, within HMPREF1058_RS07970at 88.439 kb on - strand, within HMPREF1058_RS07970at 88.471 kb on + strand, within HMPREF1058_RS07970at 88.472 kb on - strand, within HMPREF1058_RS07970at 88.475 kb on + strand, within HMPREF1058_RS07970at 88.557 kb on - strand, within HMPREF1058_RS07970at 88.581 kb on + strand, within HMPREF1058_RS07970at 88.626 kb on + strandat 88.627 kb on - strandat 88.647 kb on + strandat 88.674 kb on + strandat 88.679 kb on - strandat 88.697 kb on + strandat 88.697 kb on + strandat 88.698 kb on - strandat 88.698 kb on - strandat 88.700 kb on - strandat 88.721 kb on + strand, within HMPREF1058_RS07965at 88.775 kb on + strand, within HMPREF1058_RS07965at 88.776 kb on - strand, within HMPREF1058_RS07965at 88.776 kb on - strand, within HMPREF1058_RS07965at 88.794 kb on + strand, within HMPREF1058_RS07965at 88.877 kb on + strand, within HMPREF1058_RS07965at 88.877 kb on + strand, within HMPREF1058_RS07965at 88.878 kb on - strand, within HMPREF1058_RS07965at 88.879 kb on + strand, within HMPREF1058_RS07965at 88.935 kb on - strand, within HMPREF1058_RS07965at 88.955 kb on + strand, within HMPREF1058_RS07965at 88.956 kb on - strand, within HMPREF1058_RS07965at 89.002 kb on + strand, within HMPREF1058_RS07965at 89.023 kb on + strand, within HMPREF1058_RS07965at 89.037 kb on - strand, within HMPREF1058_RS07965at 89.066 kb on + strand, within HMPREF1058_RS07965at 89.159 kb on - strandat 89.162 kb on + strandat 89.168 kb on + strandat 89.183 kb on - strandat 89.228 kb on + strandat 89.262 kb on - strandat 89.262 kb on - strandat 89.326 kb on + strandat 89.344 kb on - strandat 89.364 kb on - strandat 89.367 kb on + strandat 89.418 kb on - strandat 89.424 kb on + strandat 89.424 kb on + strandat 89.430 kb on - strandat 89.430 kb on - strandat 89.441 kb on + strandat 89.457 kb on + strandat 89.487 kb on - strandat 89.496 kb on + strandat 89.557 kb on - strandat 89.643 kb on + strand, within HMPREF1058_RS07960at 89.667 kb on + strand, within HMPREF1058_RS07960at 89.672 kb on - strand, within HMPREF1058_RS07960at 89.702 kb on + strand, within HMPREF1058_RS07960at 89.742 kb on - strand, within HMPREF1058_RS07960at 89.742 kb on - strandat 89.742 kb on - strand, within HMPREF1058_RS07960at 89.746 kb on - strandat 89.746 kb on - strand, within HMPREF1058_RS07960at 89.747 kb on + strand, within HMPREF1058_RS07960at 89.747 kb on + strand, within HMPREF1058_RS07960at 89.747 kb on + strand, within HMPREF1058_RS07960at 89.747 kb on + strand, within HMPREF1058_RS07960at 89.748 kb on - strand, within HMPREF1058_RS07960at 89.775 kb on + strand, within HMPREF1058_RS07960at 89.778 kb on - strand, within HMPREF1058_RS07960at 89.880 kb on + strandat 89.912 kb on + strand, within HMPREF1058_RS07960at 89.912 kb on + strand, within HMPREF1058_RS07960at 89.912 kb on + strand, within HMPREF1058_RS07960at 89.913 kb on - strand, within HMPREF1058_RS07960at 89.913 kb on - strand, within HMPREF1058_RS07960at 89.943 kb on - strand, within HMPREF1058_RS07960at 89.943 kb on - strand, within HMPREF1058_RS07960at 90.049 kb on - strand, within HMPREF1058_RS07960at 90.068 kb on + strand, within HMPREF1058_RS07960at 90.068 kb on + strand, within HMPREF1058_RS07960at 90.068 kb on + strand, within HMPREF1058_RS07960at 90.068 kb on + strand, within HMPREF1058_RS07960at 90.069 kb on - strand, within HMPREF1058_RS07960at 90.069 kb on - strand, within HMPREF1058_RS07960at 90.117 kb on - strand, within HMPREF1058_RS07960at 90.132 kb on + strand, within HMPREF1058_RS07960at 90.134 kb on + strand, within HMPREF1058_RS07960at 90.178 kb on + strand, within HMPREF1058_RS07960at 90.178 kb on + strand, within HMPREF1058_RS07960at 90.179 kb on - strand, within HMPREF1058_RS07960at 90.183 kb on - strand, within HMPREF1058_RS07960

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Per-strain Table

Position Strand Gene LocusTag Fraction pyrophosphate 1 mM phosphorus source
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87,705 + -1.3
87,706 - -1.7
87,711 - +0.5
87,738 - -0.3
87,863 + +0.0
87,863 + -1.2
87,864 - -0.7
87,865 + -0.6
87,941 + -0.7
87,941 + +0.6
87,941 + -0.2
87,943 + -0.1
87,944 - -1.8
88,004 - -2.8
88,008 - -2.3
88,125 + -0.9
88,125 + -0.2
88,126 - -0.7
88,134 + -2.1
88,140 - -0.6
88,167 + HMPREF1058_RS07970 0.13 -0.6
88,167 + HMPREF1058_RS07970 0.13 +0.6
88,168 - HMPREF1058_RS07970 0.13 +0.0
88,194 - HMPREF1058_RS07970 0.18 -1.4
88,218 + HMPREF1058_RS07970 0.22 -0.8
88,282 - HMPREF1058_RS07970 0.33 -0.6
88,362 + HMPREF1058_RS07970 0.47 -0.2
88,363 - HMPREF1058_RS07970 0.47 +0.6
88,369 - HMPREF1058_RS07970 0.48 -1.0
88,400 + HMPREF1058_RS07970 0.54 -0.8
88,400 + HMPREF1058_RS07970 0.54 -0.6
88,405 - HMPREF1058_RS07970 0.55 -0.3
88,405 - HMPREF1058_RS07970 0.55 -0.9
88,419 + HMPREF1058_RS07970 0.57 -2.4
88,422 - HMPREF1058_RS07970 0.58 +0.1
88,439 - HMPREF1058_RS07970 0.61 -1.3
88,439 - HMPREF1058_RS07970 0.61 +0.2
88,471 + HMPREF1058_RS07970 0.66 -1.8
88,472 - HMPREF1058_RS07970 0.66 +0.3
88,475 + HMPREF1058_RS07970 0.67 -1.0
88,557 - HMPREF1058_RS07970 0.81 +0.2
88,581 + HMPREF1058_RS07970 0.85 -2.1
88,626 + -1.1
88,627 - -0.2
88,647 + -4.3
88,674 + -0.6
88,679 - -0.8
88,697 + -1.6
88,697 + -2.1
88,698 - +2.2
88,698 - -0.5
88,700 - -1.0
88,721 + HMPREF1058_RS07965 0.11 -2.9
88,775 + HMPREF1058_RS07965 0.21 -2.1
88,776 - HMPREF1058_RS07965 0.21 -1.3
88,776 - HMPREF1058_RS07965 0.21 -0.8
88,794 + HMPREF1058_RS07965 0.24 -1.5
88,877 + HMPREF1058_RS07965 0.39 -2.0
88,877 + HMPREF1058_RS07965 0.39 -0.6
88,878 - HMPREF1058_RS07965 0.40 +0.1
88,879 + HMPREF1058_RS07965 0.40 -3.1
88,935 - HMPREF1058_RS07965 0.50 -1.4
88,955 + HMPREF1058_RS07965 0.54 -3.0
88,956 - HMPREF1058_RS07965 0.54 +0.5
89,002 + HMPREF1058_RS07965 0.62 -2.9
89,023 + HMPREF1058_RS07965 0.66 -1.9
89,037 - HMPREF1058_RS07965 0.68 -1.4
89,066 + HMPREF1058_RS07965 0.74 -2.4
89,159 - -0.4
89,162 + -4.1
89,168 + +0.5
89,183 - +1.3
89,228 + -2.7
89,262 - -1.7
89,262 - -1.5
89,326 + -1.7
89,344 - -2.7
89,364 - -4.0
89,367 + -0.6
89,418 - -3.8
89,424 + -1.5
89,424 + -1.8
89,430 - -0.3
89,430 - -0.5
89,441 + -2.7
89,457 + +1.8
89,487 - -1.5
89,496 + -0.5
89,557 - +1.3
89,643 + HMPREF1058_RS07960 0.11 -1.0
89,667 + HMPREF1058_RS07960 0.11 +0.0
89,672 - HMPREF1058_RS07960 0.11 -1.0
89,702 + HMPREF1058_RS07960 0.12 -0.2
89,742 - HMPREF1058_RS07960 0.13 -2.8
89,742 - +2.8
89,742 - HMPREF1058_RS07960 0.13 -1.0
89,746 - +1.3
89,746 - HMPREF1058_RS07960 0.13 -1.0
89,747 + HMPREF1058_RS07960 0.13 +0.5
89,747 + HMPREF1058_RS07960 0.13 -1.5
89,747 + HMPREF1058_RS07960 0.13 -3.5
89,747 + HMPREF1058_RS07960 0.13 -2.0
89,748 - HMPREF1058_RS07960 0.13 -3.1
89,775 + HMPREF1058_RS07960 0.14 -1.9
89,778 - HMPREF1058_RS07960 0.14 -1.2
89,880 + +0.7
89,912 + HMPREF1058_RS07960 0.17 +0.3
89,912 + HMPREF1058_RS07960 0.17 +1.8
89,912 + HMPREF1058_RS07960 0.17 -2.1
89,913 - HMPREF1058_RS07960 0.17 -1.5
89,913 - HMPREF1058_RS07960 0.17 -2.2
89,943 - HMPREF1058_RS07960 0.18 +1.8
89,943 - HMPREF1058_RS07960 0.18 -2.2
90,049 - HMPREF1058_RS07960 0.21 -3.8
90,068 + HMPREF1058_RS07960 0.21 +0.0
90,068 + HMPREF1058_RS07960 0.21 -2.8
90,068 + HMPREF1058_RS07960 0.21 -1.7
90,068 + HMPREF1058_RS07960 0.21 -2.4
90,069 - HMPREF1058_RS07960 0.21 -3.6
90,069 - HMPREF1058_RS07960 0.21 -2.2
90,117 - HMPREF1058_RS07960 0.22 -1.8
90,132 + HMPREF1058_RS07960 0.23 -3.9
90,134 + HMPREF1058_RS07960 0.23 -0.3
90,178 + HMPREF1058_RS07960 0.24 -3.2
90,178 + HMPREF1058_RS07960 0.24 -4.0
90,179 - HMPREF1058_RS07960 0.24 -3.2
90,183 - HMPREF1058_RS07960 0.24 -2.2

Or see this region's nucleotide sequence