Experiment: pyrophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07650 and HMPREF1058_RS07645 are separated by 209 nucleotides HMPREF1058_RS07645 and HMPREF1058_RS07640 are separated by 2 nucleotides HMPREF1058_RS07640 and HMPREF1058_RS07635 are separated by 15 nucleotides HMPREF1058_RS07635 and HMPREF1058_RS07630 are separated by 69 nucleotides HMPREF1058_RS07630 and HMPREF1058_RS07625 are separated by 154 nucleotides
HMPREF1058_RS07650: HMPREF1058_RS07650 - MarR family transcriptional regulator, at 170,143 to 170,589
_RS07650
HMPREF1058_RS07645: HMPREF1058_RS07645 - 30S ribosomal protein S6, at 170,799 to 171,143
_RS07645
HMPREF1058_RS07640: HMPREF1058_RS07640 - 30S ribosomal protein S18, at 171,146 to 171,415
_RS07640
HMPREF1058_RS07635: HMPREF1058_RS07635 - 50S ribosomal protein L9, at 171,431 to 171,874
_RS07635
HMPREF1058_RS07630: HMPREF1058_RS07630 - hypothetical protein, at 171,944 to 172,636
_RS07630
HMPREF1058_RS07625: HMPREF1058_RS07625 - hypothetical protein, at 172,791 to 172,991
_RS07625
Position (kb) 171
172 Strain fitness (log2 ratio) -2
-1
0
1
2 at 170.542 kb on + strand, within HMPREF1058_RS07650 at 170.554 kb on + strand at 171.430 kb on + strand at 171.486 kb on + strand, within HMPREF1058_RS07635 at 171.654 kb on + strand, within HMPREF1058_RS07635 at 171.806 kb on + strand, within HMPREF1058_RS07635 at 171.806 kb on + strand, within HMPREF1058_RS07635 at 171.807 kb on - strand, within HMPREF1058_RS07635 at 171.885 kb on + strand at 171.895 kb on + strand at 171.949 kb on - strand at 171.980 kb on + strand at 172.000 kb on + strand at 172.021 kb on + strand, within HMPREF1058_RS07630 at 172.056 kb on + strand, within HMPREF1058_RS07630 at 172.056 kb on + strand, within HMPREF1058_RS07630 at 172.056 kb on + strand, within HMPREF1058_RS07630 at 172.057 kb on - strand, within HMPREF1058_RS07630 at 172.147 kb on + strand, within HMPREF1058_RS07630 at 172.165 kb on + strand, within HMPREF1058_RS07630 at 172.165 kb on + strand, within HMPREF1058_RS07630 at 172.167 kb on + strand, within HMPREF1058_RS07630 at 172.167 kb on + strand, within HMPREF1058_RS07630 at 172.168 kb on - strand, within HMPREF1058_RS07630 at 172.168 kb on - strand, within HMPREF1058_RS07630 at 172.283 kb on + strand, within HMPREF1058_RS07630 at 172.349 kb on - strand, within HMPREF1058_RS07630 at 172.385 kb on + strand, within HMPREF1058_RS07630 at 172.415 kb on + strand, within HMPREF1058_RS07630 at 172.415 kb on + strand, within HMPREF1058_RS07630 at 172.441 kb on + strand, within HMPREF1058_RS07630 at 172.441 kb on + strand, within HMPREF1058_RS07630 at 172.489 kb on + strand, within HMPREF1058_RS07630 at 172.493 kb on + strand, within HMPREF1058_RS07630 at 172.546 kb on + strand, within HMPREF1058_RS07630 at 172.547 kb on - strand, within HMPREF1058_RS07630 at 172.547 kb on - strand, within HMPREF1058_RS07630 at 172.671 kb on + strand at 172.683 kb on - strand at 172.687 kb on + strand at 172.720 kb on + strand at 172.721 kb on - strand at 172.792 kb on + strand at 172.792 kb on + strand at 172.806 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyrophosphate 1 mM phosphorus source remove 170,542 + HMPREF1058_RS07650 0.89 +0.2 170,554 + +1.1 171,430 + -1.2 171,486 + HMPREF1058_RS07635 0.12 -1.5 171,654 + HMPREF1058_RS07635 0.50 -0.6 171,806 + HMPREF1058_RS07635 0.84 -2.1 171,806 + HMPREF1058_RS07635 0.84 -0.5 171,807 - HMPREF1058_RS07635 0.85 +1.8 171,885 + -0.2 171,895 + -0.5 171,949 - +1.0 171,980 + +0.1 172,000 + -0.8 172,021 + HMPREF1058_RS07630 0.11 -1.2 172,056 + HMPREF1058_RS07630 0.16 -1.3 172,056 + HMPREF1058_RS07630 0.16 -1.3 172,056 + HMPREF1058_RS07630 0.16 +1.0 172,057 - HMPREF1058_RS07630 0.16 +0.2 172,147 + HMPREF1058_RS07630 0.29 +0.3 172,165 + HMPREF1058_RS07630 0.32 -0.5 172,165 + HMPREF1058_RS07630 0.32 -0.4 172,167 + HMPREF1058_RS07630 0.32 +0.8 172,167 + HMPREF1058_RS07630 0.32 +0.2 172,168 - HMPREF1058_RS07630 0.32 +0.5 172,168 - HMPREF1058_RS07630 0.32 +0.5 172,283 + HMPREF1058_RS07630 0.49 -0.8 172,349 - HMPREF1058_RS07630 0.58 +0.6 172,385 + HMPREF1058_RS07630 0.64 -0.5 172,415 + HMPREF1058_RS07630 0.68 +0.7 172,415 + HMPREF1058_RS07630 0.68 +0.6 172,441 + HMPREF1058_RS07630 0.72 -0.9 172,441 + HMPREF1058_RS07630 0.72 +0.3 172,489 + HMPREF1058_RS07630 0.79 -1.8 172,493 + HMPREF1058_RS07630 0.79 +0.2 172,546 + HMPREF1058_RS07630 0.87 -0.6 172,547 - HMPREF1058_RS07630 0.87 +1.2 172,547 - HMPREF1058_RS07630 0.87 +1.2 172,671 + -0.4 172,683 - +0.3 172,687 + -0.6 172,720 + -0.4 172,721 - +0.4 172,792 + -1.4 172,792 + +0.0 172,806 - -0.3
Or see this region's nucleotide sequence