Experiment: pyrophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS20265 and HMPREF1058_RS07485 are separated by 65 nucleotides HMPREF1058_RS07485 and HMPREF1058_RS07480 are separated by 4 nucleotides
HMPREF1058_RS20265: HMPREF1058_RS20265 - hypothetical protein, at 211,145 to 214,651
_RS20265
HMPREF1058_RS07485: HMPREF1058_RS07485 - PqqD family protein, at 214,717 to 214,986
_RS07485
HMPREF1058_RS07480: HMPREF1058_RS07480 - nucleotidyltransferase family protein, at 214,991 to 216,097
_RS07480
Position (kb) 214
215 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 213.802 kb on - strand, within HMPREF1058_RS20265 at 213.826 kb on - strand, within HMPREF1058_RS20265 at 213.826 kb on - strand, within HMPREF1058_RS20265 at 213.927 kb on - strand, within HMPREF1058_RS20265 at 213.954 kb on - strand, within HMPREF1058_RS20265 at 213.991 kb on - strand, within HMPREF1058_RS20265 at 213.992 kb on + strand, within HMPREF1058_RS20265 at 214.016 kb on - strand, within HMPREF1058_RS20265 at 214.017 kb on + strand, within HMPREF1058_RS20265 at 214.017 kb on + strand, within HMPREF1058_RS20265 at 214.017 kb on + strand, within HMPREF1058_RS20265 at 214.018 kb on - strand, within HMPREF1058_RS20265 at 214.018 kb on - strand, within HMPREF1058_RS20265 at 214.112 kb on + strand, within HMPREF1058_RS20265 at 214.123 kb on + strand, within HMPREF1058_RS20265 at 214.123 kb on + strand, within HMPREF1058_RS20265 at 214.129 kb on + strand, within HMPREF1058_RS20265 at 214.211 kb on - strand, within HMPREF1058_RS20265 at 214.243 kb on + strand, within HMPREF1058_RS20265 at 214.334 kb on - strand at 214.369 kb on + strand at 214.386 kb on - strand at 214.421 kb on - strand at 214.421 kb on - strand at 214.450 kb on + strand at 214.539 kb on - strand at 214.539 kb on - strand at 214.560 kb on + strand at 214.569 kb on + strand at 214.593 kb on + strand at 214.593 kb on + strand at 214.594 kb on - strand at 214.637 kb on - strand at 214.706 kb on - strand at 214.708 kb on - strand at 214.717 kb on - strand at 214.752 kb on - strand, within HMPREF1058_RS07485 at 214.770 kb on - strand, within HMPREF1058_RS07485 at 214.782 kb on + strand, within HMPREF1058_RS07485 at 214.809 kb on + strand, within HMPREF1058_RS07485 at 214.908 kb on + strand, within HMPREF1058_RS07485 at 214.908 kb on + strand, within HMPREF1058_RS07485 at 214.909 kb on - strand, within HMPREF1058_RS07485 at 214.950 kb on + strand at 214.977 kb on - strand at 214.977 kb on - strand at 214.979 kb on + strand at 215.108 kb on + strand, within HMPREF1058_RS07480 at 215.109 kb on - strand, within HMPREF1058_RS07480 at 215.111 kb on - strand, within HMPREF1058_RS07480 at 215.111 kb on - strand, within HMPREF1058_RS07480 at 215.336 kb on + strand, within HMPREF1058_RS07480 at 215.340 kb on - strand, within HMPREF1058_RS07480 at 215.373 kb on + strand, within HMPREF1058_RS07480 at 215.373 kb on + strand, within HMPREF1058_RS07480 at 215.374 kb on - strand, within HMPREF1058_RS07480 at 215.374 kb on - strand, within HMPREF1058_RS07480 at 215.374 kb on - strand, within HMPREF1058_RS07480 at 215.464 kb on - strand, within HMPREF1058_RS07480 at 215.494 kb on + strand, within HMPREF1058_RS07480 at 215.497 kb on + strand, within HMPREF1058_RS07480 at 215.497 kb on + strand, within HMPREF1058_RS07480 at 215.498 kb on - strand, within HMPREF1058_RS07480 at 215.543 kb on - strand, within HMPREF1058_RS07480 at 215.546 kb on - strand, within HMPREF1058_RS07480 at 215.665 kb on + strand, within HMPREF1058_RS07480 at 215.700 kb on - strand, within HMPREF1058_RS07480 at 215.804 kb on - strand, within HMPREF1058_RS07480 at 215.804 kb on - strand, within HMPREF1058_RS07480 at 215.860 kb on - strand, within HMPREF1058_RS07480 at 215.918 kb on - strand, within HMPREF1058_RS07480 at 215.983 kb on + strand, within HMPREF1058_RS07480
Per-strain Table
Position Strand Gene LocusTag Fraction pyrophosphate 1 mM phosphorus source remove 213,802 - HMPREF1058_RS20265 0.76 +0.0 213,826 - HMPREF1058_RS20265 0.76 +0.3 213,826 - HMPREF1058_RS20265 0.76 -1.5 213,927 - HMPREF1058_RS20265 0.79 -0.6 213,954 - HMPREF1058_RS20265 0.80 +0.2 213,991 - HMPREF1058_RS20265 0.81 +0.5 213,992 + HMPREF1058_RS20265 0.81 +0.6 214,016 - HMPREF1058_RS20265 0.82 -1.5 214,017 + HMPREF1058_RS20265 0.82 +0.1 214,017 + HMPREF1058_RS20265 0.82 +0.4 214,017 + HMPREF1058_RS20265 0.82 +1.1 214,018 - HMPREF1058_RS20265 0.82 -2.2 214,018 - HMPREF1058_RS20265 0.82 -0.5 214,112 + HMPREF1058_RS20265 0.85 -1.1 214,123 + HMPREF1058_RS20265 0.85 -0.7 214,123 + HMPREF1058_RS20265 0.85 +0.8 214,129 + HMPREF1058_RS20265 0.85 -0.7 214,211 - HMPREF1058_RS20265 0.87 -0.2 214,243 + HMPREF1058_RS20265 0.88 -2.5 214,334 - -0.5 214,369 + -0.5 214,386 - +0.0 214,421 - +1.3 214,421 - -0.5 214,450 + +0.4 214,539 - -1.1 214,539 - +2.8 214,560 + -1.8 214,569 + -0.3 214,593 + -1.0 214,593 + +0.1 214,594 - -0.4 214,637 - -0.5 214,706 - -1.1 214,708 - +0.6 214,717 - -0.1 214,752 - HMPREF1058_RS07485 0.13 -0.6 214,770 - HMPREF1058_RS07485 0.20 -1.8 214,782 + HMPREF1058_RS07485 0.24 -1.3 214,809 + HMPREF1058_RS07485 0.34 -1.0 214,908 + HMPREF1058_RS07485 0.71 -1.9 214,908 + HMPREF1058_RS07485 0.71 -1.3 214,909 - HMPREF1058_RS07485 0.71 -3.6 214,950 + +0.8 214,977 - +0.4 214,977 - -0.3 214,979 + -0.3 215,108 + HMPREF1058_RS07480 0.11 +1.2 215,109 - HMPREF1058_RS07480 0.11 -2.1 215,111 - HMPREF1058_RS07480 0.11 +0.7 215,111 - HMPREF1058_RS07480 0.11 -0.2 215,336 + HMPREF1058_RS07480 0.31 -3.4 215,340 - HMPREF1058_RS07480 0.32 +0.1 215,373 + HMPREF1058_RS07480 0.35 +0.8 215,373 + HMPREF1058_RS07480 0.35 -2.6 215,374 - HMPREF1058_RS07480 0.35 -2.3 215,374 - HMPREF1058_RS07480 0.35 -1.5 215,374 - HMPREF1058_RS07480 0.35 -0.0 215,464 - HMPREF1058_RS07480 0.43 -0.6 215,494 + HMPREF1058_RS07480 0.45 -1.1 215,497 + HMPREF1058_RS07480 0.46 -0.3 215,497 + HMPREF1058_RS07480 0.46 +0.4 215,498 - HMPREF1058_RS07480 0.46 +0.2 215,543 - HMPREF1058_RS07480 0.50 -0.6 215,546 - HMPREF1058_RS07480 0.50 +2.8 215,665 + HMPREF1058_RS07480 0.61 -2.3 215,700 - HMPREF1058_RS07480 0.64 +0.5 215,804 - HMPREF1058_RS07480 0.73 -0.1 215,804 - HMPREF1058_RS07480 0.73 -1.2 215,860 - HMPREF1058_RS07480 0.79 -0.9 215,918 - HMPREF1058_RS07480 0.84 -2.7 215,983 + HMPREF1058_RS07480 0.90 -0.8
Or see this region's nucleotide sequence