Experiment: pyrophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06645 and HMPREF1058_RS06640 are separated by 7 nucleotides HMPREF1058_RS06640 and HMPREF1058_RS06635 are separated by 176 nucleotides HMPREF1058_RS06635 and HMPREF1058_RS06630 overlap by 1 nucleotides
HMPREF1058_RS06645: HMPREF1058_RS06645 - SLBB domain-containing protein, at 428,720 to 431,212
_RS06645
HMPREF1058_RS06640: HMPREF1058_RS06640 - chain-length determining protein, at 431,220 to 432,359
_RS06640
HMPREF1058_RS06635: HMPREF1058_RS06635 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 432,536 to 433,105
_RS06635
HMPREF1058_RS06630: HMPREF1058_RS06630 - glucose-1-phosphate thymidylyltransferase RfbA, at 433,105 to 433,992
_RS06630
Position (kb) 431
432
433 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 430.268 kb on + strand, within HMPREF1058_RS06645 at 430.328 kb on - strand, within HMPREF1058_RS06645 at 430.330 kb on + strand, within HMPREF1058_RS06645 at 430.330 kb on + strand, within HMPREF1058_RS06645 at 430.332 kb on + strand, within HMPREF1058_RS06645 at 430.442 kb on + strand, within HMPREF1058_RS06645 at 430.442 kb on + strand, within HMPREF1058_RS06645 at 430.515 kb on + strand, within HMPREF1058_RS06645 at 430.515 kb on + strand, within HMPREF1058_RS06645 at 430.517 kb on + strand, within HMPREF1058_RS06645 at 430.518 kb on - strand, within HMPREF1058_RS06645 at 430.518 kb on - strand, within HMPREF1058_RS06645 at 430.525 kb on + strand, within HMPREF1058_RS06645 at 430.666 kb on + strand, within HMPREF1058_RS06645 at 430.718 kb on - strand, within HMPREF1058_RS06645 at 430.789 kb on + strand, within HMPREF1058_RS06645 at 430.794 kb on - strand, within HMPREF1058_RS06645 at 430.794 kb on - strand, within HMPREF1058_RS06645 at 430.796 kb on + strand, within HMPREF1058_RS06645 at 430.797 kb on - strand, within HMPREF1058_RS06645 at 430.890 kb on - strand, within HMPREF1058_RS06645 at 430.903 kb on - strand, within HMPREF1058_RS06645 at 430.967 kb on + strand at 430.972 kb on + strand at 430.972 kb on + strand at 430.973 kb on - strand at 430.974 kb on + strand at 431.022 kb on - strand at 431.028 kb on + strand at 431.033 kb on - strand at 431.180 kb on - strand at 431.180 kb on - strand at 431.180 kb on - strand at 431.191 kb on + strand at 431.191 kb on + strand at 431.197 kb on + strand at 431.205 kb on + strand at 431.246 kb on + strand at 431.306 kb on + strand at 431.351 kb on - strand, within HMPREF1058_RS06640 at 431.357 kb on + strand, within HMPREF1058_RS06640 at 431.397 kb on + strand, within HMPREF1058_RS06640 at 431.399 kb on + strand, within HMPREF1058_RS06640 at 431.400 kb on - strand, within HMPREF1058_RS06640 at 431.521 kb on + strand, within HMPREF1058_RS06640 at 431.539 kb on + strand, within HMPREF1058_RS06640 at 431.539 kb on + strand, within HMPREF1058_RS06640 at 431.539 kb on + strand, within HMPREF1058_RS06640 at 431.540 kb on - strand, within HMPREF1058_RS06640 at 431.540 kb on - strand, within HMPREF1058_RS06640 at 431.540 kb on - strand, within HMPREF1058_RS06640 at 431.610 kb on - strand, within HMPREF1058_RS06640 at 431.621 kb on - strand, within HMPREF1058_RS06640 at 431.626 kb on - strand, within HMPREF1058_RS06640 at 431.911 kb on - strand, within HMPREF1058_RS06640 at 431.970 kb on + strand, within HMPREF1058_RS06640 at 431.971 kb on - strand, within HMPREF1058_RS06640 at 431.991 kb on + strand, within HMPREF1058_RS06640 at 431.994 kb on + strand, within HMPREF1058_RS06640 at 431.994 kb on + strand, within HMPREF1058_RS06640 at 431.994 kb on + strand, within HMPREF1058_RS06640 at 431.994 kb on + strand, within HMPREF1058_RS06640 at 431.995 kb on - strand, within HMPREF1058_RS06640 at 431.995 kb on - strand, within HMPREF1058_RS06640 at 432.012 kb on + strand, within HMPREF1058_RS06640 at 432.012 kb on + strand, within HMPREF1058_RS06640 at 432.102 kb on + strand, within HMPREF1058_RS06640 at 432.103 kb on - strand, within HMPREF1058_RS06640 at 432.111 kb on + strand, within HMPREF1058_RS06640 at 432.111 kb on + strand, within HMPREF1058_RS06640 at 432.112 kb on - strand, within HMPREF1058_RS06640 at 432.112 kb on - strand, within HMPREF1058_RS06640 at 432.113 kb on + strand, within HMPREF1058_RS06640 at 432.326 kb on + strand at 432.360 kb on + strand at 432.360 kb on + strand at 432.362 kb on + strand at 432.363 kb on - strand at 432.363 kb on - strand at 432.363 kb on - strand at 432.363 kb on - strand at 432.378 kb on + strand at 432.417 kb on - strand at 432.424 kb on + strand at 432.475 kb on - strand at 432.541 kb on - strand at 432.573 kb on + strand at 433.139 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyrophosphate 1 mM phosphorus source remove 430,268 + HMPREF1058_RS06645 0.62 -0.3 430,328 - HMPREF1058_RS06645 0.65 +0.3 430,330 + HMPREF1058_RS06645 0.65 +0.9 430,330 + HMPREF1058_RS06645 0.65 -3.3 430,332 + HMPREF1058_RS06645 0.65 +0.3 430,442 + HMPREF1058_RS06645 0.69 -0.3 430,442 + HMPREF1058_RS06645 0.69 -0.6 430,515 + HMPREF1058_RS06645 0.72 -0.2 430,515 + HMPREF1058_RS06645 0.72 -1.5 430,517 + HMPREF1058_RS06645 0.72 -1.6 430,518 - HMPREF1058_RS06645 0.72 +0.0 430,518 - HMPREF1058_RS06645 0.72 -0.1 430,525 + HMPREF1058_RS06645 0.72 -0.3 430,666 + HMPREF1058_RS06645 0.78 -2.3 430,718 - HMPREF1058_RS06645 0.80 -0.6 430,789 + HMPREF1058_RS06645 0.83 -3.7 430,794 - HMPREF1058_RS06645 0.83 -2.3 430,794 - HMPREF1058_RS06645 0.83 -1.6 430,796 + HMPREF1058_RS06645 0.83 +1.9 430,797 - HMPREF1058_RS06645 0.83 -1.9 430,890 - HMPREF1058_RS06645 0.87 -0.5 430,903 - HMPREF1058_RS06645 0.88 -1.0 430,967 + -0.6 430,972 + -0.5 430,972 + +0.4 430,973 - -1.2 430,974 + +0.1 431,022 - -0.7 431,028 + -1.5 431,033 - -3.0 431,180 - -0.0 431,180 - -0.4 431,180 - -0.9 431,191 + -1.8 431,191 + -1.1 431,197 + -2.6 431,205 + -0.1 431,246 + +1.4 431,306 + -0.7 431,351 - HMPREF1058_RS06640 0.11 +1.4 431,357 + HMPREF1058_RS06640 0.12 +0.1 431,397 + HMPREF1058_RS06640 0.16 -0.5 431,399 + HMPREF1058_RS06640 0.16 -3.2 431,400 - HMPREF1058_RS06640 0.16 -1.9 431,521 + HMPREF1058_RS06640 0.26 -1.3 431,539 + HMPREF1058_RS06640 0.28 -2.2 431,539 + HMPREF1058_RS06640 0.28 -1.7 431,539 + HMPREF1058_RS06640 0.28 -0.8 431,540 - HMPREF1058_RS06640 0.28 -1.1 431,540 - HMPREF1058_RS06640 0.28 -0.1 431,540 - HMPREF1058_RS06640 0.28 -2.4 431,610 - HMPREF1058_RS06640 0.34 +0.2 431,621 - HMPREF1058_RS06640 0.35 -1.6 431,626 - HMPREF1058_RS06640 0.36 -1.5 431,911 - HMPREF1058_RS06640 0.61 -2.1 431,970 + HMPREF1058_RS06640 0.66 -1.0 431,971 - HMPREF1058_RS06640 0.66 -0.6 431,991 + HMPREF1058_RS06640 0.68 -1.3 431,994 + HMPREF1058_RS06640 0.68 -2.3 431,994 + HMPREF1058_RS06640 0.68 -1.9 431,994 + HMPREF1058_RS06640 0.68 -0.4 431,994 + HMPREF1058_RS06640 0.68 -1.2 431,995 - HMPREF1058_RS06640 0.68 -1.5 431,995 - HMPREF1058_RS06640 0.68 -3.3 432,012 + HMPREF1058_RS06640 0.69 -2.1 432,012 + HMPREF1058_RS06640 0.69 -1.5 432,102 + HMPREF1058_RS06640 0.77 -2.8 432,103 - HMPREF1058_RS06640 0.77 -1.8 432,111 + HMPREF1058_RS06640 0.78 -3.0 432,111 + HMPREF1058_RS06640 0.78 +1.5 432,112 - HMPREF1058_RS06640 0.78 -1.1 432,112 - HMPREF1058_RS06640 0.78 -0.1 432,113 + HMPREF1058_RS06640 0.78 +0.4 432,326 + -0.2 432,360 + -0.2 432,360 + -0.3 432,362 + +0.2 432,363 - -0.8 432,363 - -1.3 432,363 - -1.0 432,363 - -0.3 432,378 + +0.5 432,417 - -3.0 432,424 + +1.9 432,475 - +0.2 432,541 - -1.7 432,573 + +2.0 433,139 - -0.9
Or see this region's nucleotide sequence