Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05140

Experiment: pyrophosphate 1 mM phosphorus source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS05145 and HMPREF1058_RS05140 are separated by 42 nucleotidesHMPREF1058_RS05140 and HMPREF1058_RS05135 are separated by 214 nucleotides HMPREF1058_RS05145: HMPREF1058_RS05145 - ATP-binding protein, at 232,281 to 233,459 _RS05145 HMPREF1058_RS05140: HMPREF1058_RS05140 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 233,502 to 237,047 _RS05140 HMPREF1058_RS05135: HMPREF1058_RS05135 - arylsulfatase, at 237,262 to 238,779 _RS05135 Position (kb) 233 234 235 236 237 238Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 232.504 kb on - strand, within HMPREF1058_RS05145at 232.505 kb on + strand, within HMPREF1058_RS05145at 232.505 kb on + strand, within HMPREF1058_RS05145at 232.638 kb on - strand, within HMPREF1058_RS05145at 232.707 kb on - strand, within HMPREF1058_RS05145at 232.773 kb on + strand, within HMPREF1058_RS05145at 232.773 kb on + strand, within HMPREF1058_RS05145at 232.848 kb on + strand, within HMPREF1058_RS05145at 232.879 kb on - strand, within HMPREF1058_RS05145at 232.948 kb on + strand, within HMPREF1058_RS05145at 232.952 kb on + strand, within HMPREF1058_RS05145at 232.954 kb on + strand, within HMPREF1058_RS05145at 232.954 kb on + strand, within HMPREF1058_RS05145at 232.954 kb on + strand, within HMPREF1058_RS05145at 232.954 kb on + strand, within HMPREF1058_RS05145at 232.955 kb on - strand, within HMPREF1058_RS05145at 232.996 kb on + strand, within HMPREF1058_RS05145at 233.010 kb on + strand, within HMPREF1058_RS05145at 233.291 kb on + strand, within HMPREF1058_RS05145at 233.291 kb on + strand, within HMPREF1058_RS05145at 233.372 kb on + strandat 233.388 kb on + strandat 233.452 kb on + strandat 233.556 kb on - strandat 233.556 kb on - strandat 233.562 kb on + strandat 233.585 kb on + strandat 233.792 kb on + strandat 233.830 kb on + strandat 233.840 kb on - strandat 233.849 kb on + strandat 233.944 kb on + strand, within HMPREF1058_RS05140at 233.985 kb on - strand, within HMPREF1058_RS05140at 234.235 kb on + strand, within HMPREF1058_RS05140at 234.412 kb on + strandat 234.462 kb on - strand, within HMPREF1058_RS05140at 234.498 kb on - strand, within HMPREF1058_RS05140at 234.498 kb on - strand, within HMPREF1058_RS05140at 234.796 kb on + strand, within HMPREF1058_RS05140at 234.940 kb on - strand, within HMPREF1058_RS05140at 234.977 kb on - strand, within HMPREF1058_RS05140at 235.308 kb on + strand, within HMPREF1058_RS05140at 235.594 kb on - strand, within HMPREF1058_RS05140at 235.594 kb on - strand, within HMPREF1058_RS05140at 235.854 kb on - strand, within HMPREF1058_RS05140at 236.072 kb on + strand, within HMPREF1058_RS05140at 236.076 kb on - strand, within HMPREF1058_RS05140at 236.180 kb on + strand, within HMPREF1058_RS05140at 236.373 kb on + strand, within HMPREF1058_RS05140at 236.581 kb on + strand, within HMPREF1058_RS05140at 236.616 kb on + strand, within HMPREF1058_RS05140at 236.627 kb on - strand, within HMPREF1058_RS05140at 236.627 kb on - strand, within HMPREF1058_RS05140at 236.969 kb on - strandat 237.045 kb on + strandat 237.063 kb on + strandat 237.064 kb on - strandat 237.065 kb on + strandat 237.121 kb on + strandat 237.122 kb on - strandat 237.124 kb on + strandat 237.124 kb on + strandat 237.125 kb on - strandat 237.125 kb on - strandat 237.126 kb on + strandat 237.126 kb on + strandat 237.127 kb on - strandat 237.129 kb on - strandat 237.146 kb on + strandat 237.146 kb on + strandat 237.146 kb on + strandat 237.146 kb on + strandat 237.146 kb on + strandat 237.147 kb on - strandat 237.147 kb on - strandat 237.147 kb on - strandat 237.176 kb on - strandat 237.200 kb on - strandat 237.239 kb on - strandat 237.239 kb on - strandat 237.267 kb on + strandat 237.273 kb on - strandat 237.574 kb on - strand, within HMPREF1058_RS05135at 237.577 kb on + strand, within HMPREF1058_RS05135at 237.578 kb on - strand, within HMPREF1058_RS05135at 237.683 kb on + strandat 237.783 kb on - strand, within HMPREF1058_RS05135at 237.807 kb on + strand, within HMPREF1058_RS05135at 237.807 kb on + strand, within HMPREF1058_RS05135at 237.813 kb on + strand, within HMPREF1058_RS05135at 237.837 kb on + strand, within HMPREF1058_RS05135at 237.837 kb on + strand, within HMPREF1058_RS05135at 237.838 kb on - strand, within HMPREF1058_RS05135at 237.970 kb on + strand, within HMPREF1058_RS05135at 237.970 kb on + strand, within HMPREF1058_RS05135at 237.970 kb on + strand, within HMPREF1058_RS05135at 238.035 kb on - strand, within HMPREF1058_RS05135

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Per-strain Table

Position Strand Gene LocusTag Fraction pyrophosphate 1 mM phosphorus source
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232,504 - HMPREF1058_RS05145 0.19 -0.8
232,505 + HMPREF1058_RS05145 0.19 -1.9
232,505 + HMPREF1058_RS05145 0.19 -1.5
232,638 - HMPREF1058_RS05145 0.30 +0.1
232,707 - HMPREF1058_RS05145 0.36 -1.2
232,773 + HMPREF1058_RS05145 0.42 +0.0
232,773 + HMPREF1058_RS05145 0.42 -0.5
232,848 + HMPREF1058_RS05145 0.48 -2.9
232,879 - HMPREF1058_RS05145 0.51 +0.3
232,948 + HMPREF1058_RS05145 0.57 -1.6
232,952 + HMPREF1058_RS05145 0.57 -1.5
232,954 + HMPREF1058_RS05145 0.57 -2.2
232,954 + HMPREF1058_RS05145 0.57 -1.3
232,954 + HMPREF1058_RS05145 0.57 -2.2
232,954 + HMPREF1058_RS05145 0.57 -2.1
232,955 - HMPREF1058_RS05145 0.57 +0.4
232,996 + HMPREF1058_RS05145 0.61 -1.3
233,010 + HMPREF1058_RS05145 0.62 -1.0
233,291 + HMPREF1058_RS05145 0.86 -3.1
233,291 + HMPREF1058_RS05145 0.86 -1.9
233,372 + -1.5
233,388 + -1.4
233,452 + -2.0
233,556 - -0.4
233,556 - -1.1
233,562 + -1.2
233,585 + -0.3
233,792 + -0.4
233,830 + +0.6
233,840 - +0.9
233,849 + +0.5
233,944 + HMPREF1058_RS05140 0.12 -0.9
233,985 - HMPREF1058_RS05140 0.14 -0.7
234,235 + HMPREF1058_RS05140 0.21 -0.6
234,412 + -0.4
234,462 - HMPREF1058_RS05140 0.27 +0.1
234,498 - HMPREF1058_RS05140 0.28 -1.4
234,498 - HMPREF1058_RS05140 0.28 -0.6
234,796 + HMPREF1058_RS05140 0.36 -2.7
234,940 - HMPREF1058_RS05140 0.41 -1.3
234,977 - HMPREF1058_RS05140 0.42 -0.1
235,308 + HMPREF1058_RS05140 0.51 -2.4
235,594 - HMPREF1058_RS05140 0.59 -0.6
235,594 - HMPREF1058_RS05140 0.59 -0.4
235,854 - HMPREF1058_RS05140 0.66 -0.4
236,072 + HMPREF1058_RS05140 0.72 -2.2
236,076 - HMPREF1058_RS05140 0.73 -0.9
236,180 + HMPREF1058_RS05140 0.76 -0.2
236,373 + HMPREF1058_RS05140 0.81 -0.6
236,581 + HMPREF1058_RS05140 0.87 -1.7
236,616 + HMPREF1058_RS05140 0.88 -1.5
236,627 - HMPREF1058_RS05140 0.88 +0.4
236,627 - HMPREF1058_RS05140 0.88 -1.5
236,969 - +0.9
237,045 + -0.5
237,063 + +1.4
237,064 - -1.6
237,065 + -1.3
237,121 + +0.6
237,122 - +0.5
237,124 + +0.7
237,124 + -0.9
237,125 - -0.4
237,125 - +0.5
237,126 + -0.0
237,126 + -0.2
237,127 - -0.1
237,129 - -0.1
237,146 + +0.6
237,146 + -0.2
237,146 + +1.6
237,146 + -0.4
237,146 + -2.7
237,147 - +0.5
237,147 - +1.2
237,147 - +0.5
237,176 - +0.8
237,200 - -2.0
237,239 - -1.0
237,239 - +0.1
237,267 + +2.0
237,273 - -2.2
237,574 - HMPREF1058_RS05135 0.21 -0.6
237,577 + HMPREF1058_RS05135 0.21 +0.6
237,578 - HMPREF1058_RS05135 0.21 +0.4
237,683 + +1.5
237,783 - HMPREF1058_RS05135 0.34 +0.1
237,807 + HMPREF1058_RS05135 0.36 -0.2
237,807 + HMPREF1058_RS05135 0.36 +1.6
237,813 + HMPREF1058_RS05135 0.36 +1.3
237,837 + HMPREF1058_RS05135 0.38 -0.5
237,837 + HMPREF1058_RS05135 0.38 +1.3
237,838 - HMPREF1058_RS05135 0.38 -0.4
237,970 + HMPREF1058_RS05135 0.47 +0.7
237,970 + HMPREF1058_RS05135 0.47 -0.3
237,970 + HMPREF1058_RS05135 0.47 -0.5
238,035 - HMPREF1058_RS05135 0.51 -0.6

Or see this region's nucleotide sequence