Experiment: pyrophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05110 and HMPREF1058_RS05105 are separated by 15 nucleotides HMPREF1058_RS05105 and HMPREF1058_RS05100 are separated by 726 nucleotides
HMPREF1058_RS05110: HMPREF1058_RS05110 - PorT family protein, at 244,791 to 245,567
_RS05110
HMPREF1058_RS05105: HMPREF1058_RS05105 - hypothetical protein, at 245,583 to 245,825
_RS05105
HMPREF1058_RS05100: HMPREF1058_RS05100 - IS1182 family transposase, at 246,552 to 247,127
_RS05100
Position (kb) 245
246 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 244.680 kb on - strand at 244.682 kb on - strand at 244.793 kb on - strand at 244.793 kb on - strand at 244.967 kb on + strand, within HMPREF1058_RS05110 at 244.971 kb on - strand, within HMPREF1058_RS05110 at 245.034 kb on - strand, within HMPREF1058_RS05110 at 245.039 kb on + strand, within HMPREF1058_RS05110 at 245.094 kb on - strand, within HMPREF1058_RS05110 at 245.211 kb on - strand, within HMPREF1058_RS05110 at 245.255 kb on - strand, within HMPREF1058_RS05110 at 245.255 kb on - strand, within HMPREF1058_RS05110 at 245.317 kb on + strand, within HMPREF1058_RS05110 at 245.385 kb on + strand, within HMPREF1058_RS05110 at 245.386 kb on - strand, within HMPREF1058_RS05110 at 245.386 kb on - strand, within HMPREF1058_RS05110 at 245.413 kb on + strand, within HMPREF1058_RS05110 at 245.428 kb on + strand, within HMPREF1058_RS05110 at 245.429 kb on - strand, within HMPREF1058_RS05110 at 245.455 kb on + strand, within HMPREF1058_RS05110 at 245.456 kb on - strand, within HMPREF1058_RS05110 at 245.532 kb on + strand at 245.658 kb on - strand, within HMPREF1058_RS05105 at 245.663 kb on - strand, within HMPREF1058_RS05105 at 245.684 kb on - strand, within HMPREF1058_RS05105 at 245.703 kb on - strand, within HMPREF1058_RS05105 at 245.778 kb on + strand, within HMPREF1058_RS05105 at 245.811 kb on - strand at 245.853 kb on + strand at 245.868 kb on - strand at 245.957 kb on + strand at 245.957 kb on + strand at 245.958 kb on - strand at 245.961 kb on + strand at 246.032 kb on - strand at 246.032 kb on - strand at 246.039 kb on - strand at 246.101 kb on + strand at 246.102 kb on - strand at 246.102 kb on - strand at 246.112 kb on - strand at 246.112 kb on - strand at 246.119 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyrophosphate 1 mM phosphorus source remove 244,680 - -0.1 244,682 - -0.3 244,793 - -1.2 244,793 - +0.2 244,967 + HMPREF1058_RS05110 0.23 -0.5 244,971 - HMPREF1058_RS05110 0.23 -2.7 245,034 - HMPREF1058_RS05110 0.31 +0.4 245,039 + HMPREF1058_RS05110 0.32 -0.1 245,094 - HMPREF1058_RS05110 0.39 -1.3 245,211 - HMPREF1058_RS05110 0.54 -0.1 245,255 - HMPREF1058_RS05110 0.60 -0.5 245,255 - HMPREF1058_RS05110 0.60 -0.4 245,317 + HMPREF1058_RS05110 0.68 +0.8 245,385 + HMPREF1058_RS05110 0.76 -0.5 245,386 - HMPREF1058_RS05110 0.77 +0.5 245,386 - HMPREF1058_RS05110 0.77 -0.4 245,413 + HMPREF1058_RS05110 0.80 +1.4 245,428 + HMPREF1058_RS05110 0.82 +1.0 245,429 - HMPREF1058_RS05110 0.82 -0.8 245,455 + HMPREF1058_RS05110 0.85 +0.2 245,456 - HMPREF1058_RS05110 0.86 -0.1 245,532 + -0.1 245,658 - HMPREF1058_RS05105 0.31 -2.0 245,663 - HMPREF1058_RS05105 0.33 -0.7 245,684 - HMPREF1058_RS05105 0.42 +0.2 245,703 - HMPREF1058_RS05105 0.49 -0.8 245,778 + HMPREF1058_RS05105 0.80 -1.2 245,811 - +0.3 245,853 + -0.7 245,868 - -0.9 245,957 + -1.2 245,957 + -0.9 245,958 - +0.6 245,961 + -1.7 246,032 - -1.6 246,032 - -0.0 246,039 - -1.3 246,101 + +0.6 246,102 - -0.3 246,102 - +1.3 246,112 - +0.7 246,112 - +2.9 246,119 - +0.0
Or see this region's nucleotide sequence