Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04270

Experiment: pyrophosphate 1 mM phosphorus source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS04280 and HMPREF1058_RS04275 are separated by 184 nucleotidesHMPREF1058_RS04275 and HMPREF1058_RS04270 are separated by 293 nucleotidesHMPREF1058_RS04270 and HMPREF1058_RS04265 overlap by 11 nucleotidesHMPREF1058_RS04265 and HMPREF1058_RS04260 are separated by 95 nucleotides HMPREF1058_RS04280: HMPREF1058_RS04280 - family 20 glycosylhydrolase, at 75,584 to 77,905 _RS04280 HMPREF1058_RS04275: HMPREF1058_RS04275 - RNA-binding protein, at 78,090 to 78,335 _RS04275 HMPREF1058_RS04270: HMPREF1058_RS04270 - ferredoxin, at 78,629 to 79,159 _RS04270 HMPREF1058_RS04265: HMPREF1058_RS04265 - Cof-type HAD-IIB family hydrolase, at 79,149 to 79,955 _RS04265 HMPREF1058_RS04260: HMPREF1058_RS04260 - DNA recombination protein RmuC, at 80,051 to 81,286 _RS04260 Position (kb) 78 79 80Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 77.653 kb on + strand, within HMPREF1058_RS04280at 77.654 kb on - strandat 77.794 kb on - strandat 77.805 kb on - strandat 77.810 kb on - strandat 77.933 kb on - strandat 77.933 kb on - strandat 78.010 kb on + strandat 78.066 kb on - strandat 78.084 kb on - strandat 78.123 kb on - strand, within HMPREF1058_RS04275at 78.136 kb on + strand, within HMPREF1058_RS04275at 78.162 kb on - strand, within HMPREF1058_RS04275at 78.195 kb on + strand, within HMPREF1058_RS04275at 78.237 kb on - strand, within HMPREF1058_RS04275at 78.246 kb on + strand, within HMPREF1058_RS04275at 78.256 kb on - strand, within HMPREF1058_RS04275at 78.265 kb on + strand, within HMPREF1058_RS04275at 78.276 kb on + strand, within HMPREF1058_RS04275at 78.277 kb on - strand, within HMPREF1058_RS04275at 78.307 kb on + strand, within HMPREF1058_RS04275at 78.307 kb on + strand, within HMPREF1058_RS04275at 78.308 kb on - strand, within HMPREF1058_RS04275at 78.308 kb on - strand, within HMPREF1058_RS04275at 78.308 kb on - strand, within HMPREF1058_RS04275at 78.380 kb on - strandat 78.392 kb on - strandat 78.400 kb on - strandat 78.477 kb on - strandat 78.573 kb on - strandat 78.575 kb on - strandat 78.575 kb on - strandat 78.583 kb on + strandat 78.615 kb on + strandat 78.626 kb on + strandat 78.712 kb on + strand, within HMPREF1058_RS04270at 78.870 kb on + strand, within HMPREF1058_RS04270at 78.871 kb on - strand, within HMPREF1058_RS04270at 79.211 kb on - strandat 79.230 kb on + strand, within HMPREF1058_RS04265at 79.271 kb on - strand, within HMPREF1058_RS04265at 79.275 kb on + strand, within HMPREF1058_RS04265at 79.280 kb on + strand, within HMPREF1058_RS04265at 79.281 kb on - strand, within HMPREF1058_RS04265at 79.350 kb on + strand, within HMPREF1058_RS04265at 79.383 kb on - strand, within HMPREF1058_RS04265at 79.402 kb on + strand, within HMPREF1058_RS04265at 79.402 kb on + strand, within HMPREF1058_RS04265at 79.447 kb on + strand, within HMPREF1058_RS04265at 79.448 kb on - strand, within HMPREF1058_RS04265at 79.448 kb on - strand, within HMPREF1058_RS04265at 79.489 kb on - strand, within HMPREF1058_RS04265at 79.508 kb on + strand, within HMPREF1058_RS04265at 79.519 kb on - strand, within HMPREF1058_RS04265at 79.582 kb on - strand, within HMPREF1058_RS04265at 79.582 kb on - strand, within HMPREF1058_RS04265at 79.585 kb on + strand, within HMPREF1058_RS04265at 79.585 kb on + strand, within HMPREF1058_RS04265at 79.586 kb on - strand, within HMPREF1058_RS04265at 79.586 kb on - strand, within HMPREF1058_RS04265at 79.586 kb on - strand, within HMPREF1058_RS04265at 79.586 kb on - strand, within HMPREF1058_RS04265at 79.586 kb on - strand, within HMPREF1058_RS04265at 79.586 kb on - strand, within HMPREF1058_RS04265at 79.664 kb on + strand, within HMPREF1058_RS04265at 79.664 kb on + strand, within HMPREF1058_RS04265at 79.664 kb on + strand, within HMPREF1058_RS04265at 79.681 kb on - strand, within HMPREF1058_RS04265at 79.681 kb on - strand, within HMPREF1058_RS04265at 79.732 kb on - strand, within HMPREF1058_RS04265at 79.758 kb on + strand, within HMPREF1058_RS04265at 79.759 kb on - strand, within HMPREF1058_RS04265at 79.759 kb on - strandat 79.759 kb on - strand, within HMPREF1058_RS04265at 79.760 kb on + strand, within HMPREF1058_RS04265at 79.763 kb on - strand, within HMPREF1058_RS04265at 79.874 kb on + strand, within HMPREF1058_RS04265at 79.955 kb on + strandat 79.955 kb on + strandat 79.955 kb on + strandat 79.955 kb on + strandat 79.956 kb on - strandat 79.956 kb on - strandat 79.957 kb on + strandat 79.960 kb on + strandat 80.095 kb on + strandat 80.113 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyrophosphate 1 mM phosphorus source
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77,653 + HMPREF1058_RS04280 0.89 -2.3
77,654 - -0.4
77,794 - -0.1
77,805 - +0.6
77,810 - -1.9
77,933 - -0.9
77,933 - -1.5
78,010 + -0.0
78,066 - +0.4
78,084 - -1.2
78,123 - HMPREF1058_RS04275 0.13 +0.4
78,136 + HMPREF1058_RS04275 0.19 +1.8
78,162 - HMPREF1058_RS04275 0.29 +0.9
78,195 + HMPREF1058_RS04275 0.43 -0.6
78,237 - HMPREF1058_RS04275 0.60 -3.1
78,246 + HMPREF1058_RS04275 0.63 -1.6
78,256 - HMPREF1058_RS04275 0.67 -0.7
78,265 + HMPREF1058_RS04275 0.71 -0.1
78,276 + HMPREF1058_RS04275 0.76 +0.2
78,277 - HMPREF1058_RS04275 0.76 -2.2
78,307 + HMPREF1058_RS04275 0.88 +0.8
78,307 + HMPREF1058_RS04275 0.88 +1.1
78,308 - HMPREF1058_RS04275 0.89 +1.4
78,308 - HMPREF1058_RS04275 0.89 -0.3
78,308 - HMPREF1058_RS04275 0.89 +0.3
78,380 - +0.3
78,392 - -0.1
78,400 - -0.5
78,477 - +0.4
78,573 - +0.0
78,575 - +0.4
78,575 - +0.3
78,583 + -0.1
78,615 + +0.1
78,626 + +1.6
78,712 + HMPREF1058_RS04270 0.16 -0.2
78,870 + HMPREF1058_RS04270 0.45 -1.3
78,871 - HMPREF1058_RS04270 0.46 -0.7
79,211 - +1.8
79,230 + HMPREF1058_RS04265 0.10 -0.5
79,271 - HMPREF1058_RS04265 0.15 -2.8
79,275 + HMPREF1058_RS04265 0.16 -1.4
79,280 + HMPREF1058_RS04265 0.16 +0.6
79,281 - HMPREF1058_RS04265 0.16 +2.2
79,350 + HMPREF1058_RS04265 0.25 +1.4
79,383 - HMPREF1058_RS04265 0.29 +0.0
79,402 + HMPREF1058_RS04265 0.31 +0.4
79,402 + HMPREF1058_RS04265 0.31 +2.6
79,447 + HMPREF1058_RS04265 0.37 -0.4
79,448 - HMPREF1058_RS04265 0.37 +0.8
79,448 - HMPREF1058_RS04265 0.37 -0.2
79,489 - HMPREF1058_RS04265 0.42 +0.3
79,508 + HMPREF1058_RS04265 0.44 -0.1
79,519 - HMPREF1058_RS04265 0.46 -2.0
79,582 - HMPREF1058_RS04265 0.54 +0.8
79,582 - HMPREF1058_RS04265 0.54 -0.9
79,585 + HMPREF1058_RS04265 0.54 +2.1
79,585 + HMPREF1058_RS04265 0.54 +1.1
79,586 - HMPREF1058_RS04265 0.54 -0.3
79,586 - HMPREF1058_RS04265 0.54 +1.9
79,586 - HMPREF1058_RS04265 0.54 +1.0
79,586 - HMPREF1058_RS04265 0.54 -0.2
79,586 - HMPREF1058_RS04265 0.54 +1.5
79,586 - HMPREF1058_RS04265 0.54 +0.0
79,664 + HMPREF1058_RS04265 0.64 +1.1
79,664 + HMPREF1058_RS04265 0.64 +0.4
79,664 + HMPREF1058_RS04265 0.64 -0.7
79,681 - HMPREF1058_RS04265 0.66 +0.1
79,681 - HMPREF1058_RS04265 0.66 -0.1
79,732 - HMPREF1058_RS04265 0.72 +0.2
79,758 + HMPREF1058_RS04265 0.75 +1.2
79,759 - HMPREF1058_RS04265 0.76 +0.9
79,759 - +2.2
79,759 - HMPREF1058_RS04265 0.76 -0.7
79,760 + HMPREF1058_RS04265 0.76 +0.0
79,763 - HMPREF1058_RS04265 0.76 +0.6
79,874 + HMPREF1058_RS04265 0.90 +0.9
79,955 + +0.6
79,955 + +1.7
79,955 + -1.6
79,955 + +1.5
79,956 - +0.2
79,956 - -1.0
79,957 + +0.2
79,960 + +1.2
80,095 + -0.4
80,113 + -1.1

Or see this region's nucleotide sequence