Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04250

Experiment: pyrophosphate 1 mM phosphorus source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS04260 and HMPREF1058_RS04255 are separated by 17 nucleotidesHMPREF1058_RS04255 and HMPREF1058_RS04250 are separated by 70 nucleotidesHMPREF1058_RS04250 and HMPREF1058_RS04245 are separated by 12 nucleotides HMPREF1058_RS04260: HMPREF1058_RS04260 - DNA recombination protein RmuC, at 80,051 to 81,286 _RS04260 HMPREF1058_RS04255: HMPREF1058_RS04255 - MgtC/SapB family protein, at 81,304 to 81,972 _RS04255 HMPREF1058_RS04250: HMPREF1058_RS04250 - sensor histidine kinase, at 82,043 to 83,512 _RS04250 HMPREF1058_RS04245: HMPREF1058_RS04245 - hypothetical protein, at 83,525 to 84,652 _RS04245 Position (kb) 82 83 84Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 81.061 kb on - strand, within HMPREF1058_RS04260at 81.445 kb on - strand, within HMPREF1058_RS04255at 81.460 kb on + strand, within HMPREF1058_RS04255at 81.469 kb on - strand, within HMPREF1058_RS04255at 81.561 kb on + strand, within HMPREF1058_RS04255at 81.562 kb on - strand, within HMPREF1058_RS04255at 81.562 kb on - strand, within HMPREF1058_RS04255at 81.562 kb on - strand, within HMPREF1058_RS04255at 81.564 kb on + strand, within HMPREF1058_RS04255at 81.655 kb on + strand, within HMPREF1058_RS04255at 81.656 kb on - strand, within HMPREF1058_RS04255at 81.656 kb on - strand, within HMPREF1058_RS04255at 81.656 kb on - strand, within HMPREF1058_RS04255at 81.708 kb on + strand, within HMPREF1058_RS04255at 81.709 kb on - strand, within HMPREF1058_RS04255at 81.728 kb on + strand, within HMPREF1058_RS04255at 81.732 kb on + strand, within HMPREF1058_RS04255at 81.819 kb on + strand, within HMPREF1058_RS04255at 81.885 kb on + strand, within HMPREF1058_RS04255at 81.960 kb on + strandat 82.100 kb on - strandat 82.106 kb on - strandat 82.207 kb on + strand, within HMPREF1058_RS04250at 82.356 kb on - strand, within HMPREF1058_RS04250at 82.381 kb on + strand, within HMPREF1058_RS04250at 82.381 kb on + strand, within HMPREF1058_RS04250at 82.462 kb on - strand, within HMPREF1058_RS04250at 82.475 kb on + strand, within HMPREF1058_RS04250at 82.476 kb on - strand, within HMPREF1058_RS04250at 82.487 kb on + strand, within HMPREF1058_RS04250at 82.487 kb on + strand, within HMPREF1058_RS04250at 82.520 kb on + strand, within HMPREF1058_RS04250at 82.553 kb on - strand, within HMPREF1058_RS04250at 82.555 kb on + strand, within HMPREF1058_RS04250at 82.583 kb on - strand, within HMPREF1058_RS04250at 82.657 kb on + strand, within HMPREF1058_RS04250at 82.765 kb on - strand, within HMPREF1058_RS04250at 82.765 kb on - strand, within HMPREF1058_RS04250at 82.824 kb on - strand, within HMPREF1058_RS04250at 82.981 kb on + strand, within HMPREF1058_RS04250at 82.984 kb on + strand, within HMPREF1058_RS04250at 83.069 kb on - strand, within HMPREF1058_RS04250at 83.093 kb on - strand, within HMPREF1058_RS04250at 83.134 kb on + strand, within HMPREF1058_RS04250at 83.327 kb on - strand, within HMPREF1058_RS04250at 83.327 kb on - strandat 83.331 kb on - strand, within HMPREF1058_RS04250at 83.331 kb on - strandat 83.332 kb on + strand, within HMPREF1058_RS04250at 83.332 kb on + strand, within HMPREF1058_RS04250at 83.332 kb on + strand, within HMPREF1058_RS04250at 83.332 kb on + strand, within HMPREF1058_RS04250at 83.333 kb on - strand, within HMPREF1058_RS04250at 83.333 kb on - strand, within HMPREF1058_RS04250at 83.352 kb on + strand, within HMPREF1058_RS04250at 83.352 kb on + strand, within HMPREF1058_RS04250at 83.353 kb on - strand, within HMPREF1058_RS04250at 83.353 kb on - strand, within HMPREF1058_RS04250at 83.355 kb on - strand, within HMPREF1058_RS04250at 83.364 kb on - strand, within HMPREF1058_RS04250at 83.504 kb on + strandat 83.504 kb on + strandat 83.505 kb on - strandat 83.636 kb on - strandat 83.676 kb on - strand, within HMPREF1058_RS04245at 83.749 kb on + strand, within HMPREF1058_RS04245at 83.753 kb on + strand, within HMPREF1058_RS04245at 83.778 kb on - strand, within HMPREF1058_RS04245at 83.830 kb on + strand, within HMPREF1058_RS04245at 83.900 kb on - strand, within HMPREF1058_RS04245at 84.038 kb on - strand, within HMPREF1058_RS04245at 84.119 kb on + strand, within HMPREF1058_RS04245at 84.120 kb on - strand, within HMPREF1058_RS04245at 84.120 kb on - strand, within HMPREF1058_RS04245at 84.120 kb on - strand, within HMPREF1058_RS04245at 84.219 kb on - strand, within HMPREF1058_RS04245at 84.219 kb on - strand, within HMPREF1058_RS04245at 84.251 kb on + strand, within HMPREF1058_RS04245at 84.253 kb on + strand, within HMPREF1058_RS04245at 84.275 kb on + strand, within HMPREF1058_RS04245at 84.276 kb on - strand, within HMPREF1058_RS04245at 84.319 kb on + strand, within HMPREF1058_RS04245at 84.320 kb on - strand, within HMPREF1058_RS04245at 84.336 kb on - strand, within HMPREF1058_RS04245at 84.356 kb on + strand, within HMPREF1058_RS04245at 84.449 kb on - strand, within HMPREF1058_RS04245at 84.489 kb on - strand, within HMPREF1058_RS04245at 84.495 kb on - strand, within HMPREF1058_RS04245at 84.500 kb on + strand, within HMPREF1058_RS04245at 84.501 kb on - strand, within HMPREF1058_RS04245

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Per-strain Table

Position Strand Gene LocusTag Fraction pyrophosphate 1 mM phosphorus source
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81,061 - HMPREF1058_RS04260 0.82 -0.9
81,445 - HMPREF1058_RS04255 0.21 -2.0
81,460 + HMPREF1058_RS04255 0.23 +1.1
81,469 - HMPREF1058_RS04255 0.25 -0.2
81,561 + HMPREF1058_RS04255 0.38 -1.0
81,562 - HMPREF1058_RS04255 0.39 +0.0
81,562 - HMPREF1058_RS04255 0.39 -0.7
81,562 - HMPREF1058_RS04255 0.39 +0.2
81,564 + HMPREF1058_RS04255 0.39 -1.0
81,655 + HMPREF1058_RS04255 0.52 -0.3
81,656 - HMPREF1058_RS04255 0.53 +0.2
81,656 - HMPREF1058_RS04255 0.53 -0.8
81,656 - HMPREF1058_RS04255 0.53 -0.8
81,708 + HMPREF1058_RS04255 0.60 -0.8
81,709 - HMPREF1058_RS04255 0.61 -0.4
81,728 + HMPREF1058_RS04255 0.63 +0.3
81,732 + HMPREF1058_RS04255 0.64 +1.3
81,819 + HMPREF1058_RS04255 0.77 -0.5
81,885 + HMPREF1058_RS04255 0.87 +0.2
81,960 + +0.2
82,100 - -2.2
82,106 - -1.7
82,207 + HMPREF1058_RS04250 0.11 +0.4
82,356 - HMPREF1058_RS04250 0.21 -0.6
82,381 + HMPREF1058_RS04250 0.23 -2.3
82,381 + HMPREF1058_RS04250 0.23 -1.5
82,462 - HMPREF1058_RS04250 0.29 -1.6
82,475 + HMPREF1058_RS04250 0.29 -3.0
82,476 - HMPREF1058_RS04250 0.29 -2.2
82,487 + HMPREF1058_RS04250 0.30 -3.1
82,487 + HMPREF1058_RS04250 0.30 -1.9
82,520 + HMPREF1058_RS04250 0.32 -0.9
82,553 - HMPREF1058_RS04250 0.35 -3.1
82,555 + HMPREF1058_RS04250 0.35 +0.4
82,583 - HMPREF1058_RS04250 0.37 -1.5
82,657 + HMPREF1058_RS04250 0.42 -0.8
82,765 - HMPREF1058_RS04250 0.49 -3.8
82,765 - HMPREF1058_RS04250 0.49 +0.0
82,824 - HMPREF1058_RS04250 0.53 -1.2
82,981 + HMPREF1058_RS04250 0.64 +0.2
82,984 + HMPREF1058_RS04250 0.64 -2.3
83,069 - HMPREF1058_RS04250 0.70 +3.2
83,093 - HMPREF1058_RS04250 0.71 -1.5
83,134 + HMPREF1058_RS04250 0.74 +2.2
83,327 - HMPREF1058_RS04250 0.87 -3.3
83,327 - +2.2
83,331 - HMPREF1058_RS04250 0.88 -1.2
83,331 - +1.2
83,332 + HMPREF1058_RS04250 0.88 +0.5
83,332 + HMPREF1058_RS04250 0.88 -0.8
83,332 + HMPREF1058_RS04250 0.88 -0.3
83,332 + HMPREF1058_RS04250 0.88 -0.4
83,333 - HMPREF1058_RS04250 0.88 +2.1
83,333 - HMPREF1058_RS04250 0.88 -1.2
83,352 + HMPREF1058_RS04250 0.89 -2.2
83,352 + HMPREF1058_RS04250 0.89 -1.2
83,353 - HMPREF1058_RS04250 0.89 +0.6
83,353 - HMPREF1058_RS04250 0.89 -1.4
83,355 - HMPREF1058_RS04250 0.89 -2.4
83,364 - HMPREF1058_RS04250 0.90 -1.5
83,504 + -2.1
83,504 + -1.6
83,505 - -0.7
83,636 - +0.4
83,676 - HMPREF1058_RS04245 0.13 +0.8
83,749 + HMPREF1058_RS04245 0.20 +0.0
83,753 + HMPREF1058_RS04245 0.20 +0.4
83,778 - HMPREF1058_RS04245 0.22 -0.5
83,830 + HMPREF1058_RS04245 0.27 +1.8
83,900 - HMPREF1058_RS04245 0.33 +1.0
84,038 - HMPREF1058_RS04245 0.45 +0.9
84,119 + HMPREF1058_RS04245 0.53 +0.5
84,120 - HMPREF1058_RS04245 0.53 +0.8
84,120 - HMPREF1058_RS04245 0.53 -2.3
84,120 - HMPREF1058_RS04245 0.53 +2.0
84,219 - HMPREF1058_RS04245 0.62 -0.4
84,219 - HMPREF1058_RS04245 0.62 -0.2
84,251 + HMPREF1058_RS04245 0.64 -2.4
84,253 + HMPREF1058_RS04245 0.65 +1.7
84,275 + HMPREF1058_RS04245 0.66 -0.4
84,276 - HMPREF1058_RS04245 0.67 -0.4
84,319 + HMPREF1058_RS04245 0.70 -1.7
84,320 - HMPREF1058_RS04245 0.70 +0.5
84,336 - HMPREF1058_RS04245 0.72 +0.4
84,356 + HMPREF1058_RS04245 0.74 +0.5
84,449 - HMPREF1058_RS04245 0.82 -1.5
84,489 - HMPREF1058_RS04245 0.85 -0.2
84,495 - HMPREF1058_RS04245 0.86 +2.0
84,500 + HMPREF1058_RS04245 0.86 +0.5
84,501 - HMPREF1058_RS04245 0.87 +0.4

Or see this region's nucleotide sequence