Experiment: pyrophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04050 and HMPREF1058_RS04045 are separated by 19 nucleotides HMPREF1058_RS04045 and HMPREF1058_RS04040 are separated by 10 nucleotides HMPREF1058_RS04040 and HMPREF1058_RS04035 are separated by 129 nucleotides
HMPREF1058_RS04050: HMPREF1058_RS04050 - protein BatD, at 126,023 to 127,858
_RS04050
HMPREF1058_RS04045: HMPREF1058_RS04045 - tetratricopeptide repeat protein, at 127,878 to 128,696
_RS04045
HMPREF1058_RS04040: HMPREF1058_RS04040 - phosphatase PAP2 family protein, at 128,707 to 129,414
_RS04040
HMPREF1058_RS04035: HMPREF1058_RS04035 - hypothetical protein, at 129,544 to 129,813
_RS04035
Position (kb) 127
128
129 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 126.946 kb on + strand, within HMPREF1058_RS04050 at 126.963 kb on + strand, within HMPREF1058_RS04050 at 127.082 kb on + strand, within HMPREF1058_RS04050 at 127.229 kb on - strand, within HMPREF1058_RS04050 at 127.232 kb on + strand, within HMPREF1058_RS04050 at 127.232 kb on + strand, within HMPREF1058_RS04050 at 127.233 kb on - strand, within HMPREF1058_RS04050 at 127.234 kb on + strand, within HMPREF1058_RS04050 at 127.235 kb on - strand, within HMPREF1058_RS04050 at 127.256 kb on + strand, within HMPREF1058_RS04050 at 127.257 kb on - strand, within HMPREF1058_RS04050 at 127.418 kb on + strand, within HMPREF1058_RS04050 at 127.419 kb on - strand, within HMPREF1058_RS04050 at 127.419 kb on - strand, within HMPREF1058_RS04050 at 127.433 kb on - strand, within HMPREF1058_RS04050 at 127.598 kb on + strand, within HMPREF1058_RS04050 at 127.599 kb on - strand, within HMPREF1058_RS04050 at 127.792 kb on + strand at 127.847 kb on - strand at 127.849 kb on - strand at 127.929 kb on + strand at 127.929 kb on + strand at 128.070 kb on + strand, within HMPREF1058_RS04045 at 128.071 kb on - strand, within HMPREF1058_RS04045 at 128.078 kb on + strand, within HMPREF1058_RS04045 at 128.078 kb on + strand, within HMPREF1058_RS04045 at 128.133 kb on + strand, within HMPREF1058_RS04045 at 128.172 kb on + strand, within HMPREF1058_RS04045 at 128.172 kb on + strand, within HMPREF1058_RS04045 at 128.257 kb on + strand, within HMPREF1058_RS04045 at 128.337 kb on - strand, within HMPREF1058_RS04045 at 128.345 kb on + strand, within HMPREF1058_RS04045 at 128.354 kb on + strand, within HMPREF1058_RS04045 at 128.365 kb on + strand, within HMPREF1058_RS04045 at 128.446 kb on + strand, within HMPREF1058_RS04045 at 128.467 kb on + strand, within HMPREF1058_RS04045 at 128.498 kb on + strand, within HMPREF1058_RS04045 at 128.514 kb on - strand, within HMPREF1058_RS04045 at 128.517 kb on - strand, within HMPREF1058_RS04045 at 128.518 kb on + strand, within HMPREF1058_RS04045 at 128.519 kb on - strand, within HMPREF1058_RS04045 at 128.573 kb on - strand, within HMPREF1058_RS04045 at 128.573 kb on - strand, within HMPREF1058_RS04045 at 128.713 kb on - strand at 128.714 kb on + strand at 128.715 kb on - strand at 128.723 kb on - strand at 128.723 kb on - strand at 128.723 kb on - strand at 128.723 kb on - strand at 128.726 kb on + strand at 128.809 kb on - strand, within HMPREF1058_RS04040 at 128.836 kb on - strand, within HMPREF1058_RS04040 at 128.843 kb on + strand, within HMPREF1058_RS04040 at 128.846 kb on - strand at 128.848 kb on - strand, within HMPREF1058_RS04040 at 128.919 kb on - strand, within HMPREF1058_RS04040 at 128.988 kb on + strand, within HMPREF1058_RS04040 at 128.988 kb on + strand, within HMPREF1058_RS04040 at 128.992 kb on - strand, within HMPREF1058_RS04040 at 128.995 kb on + strand, within HMPREF1058_RS04040 at 128.995 kb on + strand, within HMPREF1058_RS04040 at 128.997 kb on + strand, within HMPREF1058_RS04040 at 128.998 kb on - strand, within HMPREF1058_RS04040 at 129.073 kb on - strand, within HMPREF1058_RS04040 at 129.167 kb on + strand, within HMPREF1058_RS04040 at 129.206 kb on + strand, within HMPREF1058_RS04040 at 129.206 kb on + strand, within HMPREF1058_RS04040 at 129.207 kb on - strand, within HMPREF1058_RS04040 at 129.221 kb on + strand, within HMPREF1058_RS04040 at 129.247 kb on - strand, within HMPREF1058_RS04040 at 129.298 kb on + strand, within HMPREF1058_RS04040 at 129.330 kb on + strand, within HMPREF1058_RS04040 at 129.345 kb on - strand at 129.362 kb on - strand at 129.373 kb on - strand at 129.399 kb on + strand at 129.433 kb on + strand at 129.443 kb on + strand at 129.444 kb on - strand at 129.555 kb on - strand at 129.555 kb on - strand at 129.555 kb on - strand at 129.631 kb on - strand, within HMPREF1058_RS04035 at 129.648 kb on - strand, within HMPREF1058_RS04035 at 129.648 kb on - strand, within HMPREF1058_RS04035 at 129.652 kb on - strand, within HMPREF1058_RS04035
Per-strain Table
Position Strand Gene LocusTag Fraction pyrophosphate 1 mM phosphorus source remove 126,946 + HMPREF1058_RS04050 0.50 -0.1 126,963 + HMPREF1058_RS04050 0.51 -1.3 127,082 + HMPREF1058_RS04050 0.58 -2.1 127,229 - HMPREF1058_RS04050 0.66 +0.0 127,232 + HMPREF1058_RS04050 0.66 -0.9 127,232 + HMPREF1058_RS04050 0.66 +0.4 127,233 - HMPREF1058_RS04050 0.66 -0.2 127,234 + HMPREF1058_RS04050 0.66 +0.9 127,235 - HMPREF1058_RS04050 0.66 +1.2 127,256 + HMPREF1058_RS04050 0.67 -0.2 127,257 - HMPREF1058_RS04050 0.67 -0.5 127,418 + HMPREF1058_RS04050 0.76 -0.1 127,419 - HMPREF1058_RS04050 0.76 +0.1 127,419 - HMPREF1058_RS04050 0.76 +1.5 127,433 - HMPREF1058_RS04050 0.77 +3.2 127,598 + HMPREF1058_RS04050 0.86 -1.4 127,599 - HMPREF1058_RS04050 0.86 +0.6 127,792 + -1.0 127,847 - +0.9 127,849 - +0.9 127,929 + -0.2 127,929 + +0.4 128,070 + HMPREF1058_RS04045 0.23 -2.3 128,071 - HMPREF1058_RS04045 0.24 -2.0 128,078 + HMPREF1058_RS04045 0.24 -1.9 128,078 + HMPREF1058_RS04045 0.24 +0.2 128,133 + HMPREF1058_RS04045 0.31 +1.6 128,172 + HMPREF1058_RS04045 0.36 -0.2 128,172 + HMPREF1058_RS04045 0.36 -0.1 128,257 + HMPREF1058_RS04045 0.46 +0.4 128,337 - HMPREF1058_RS04045 0.56 +0.2 128,345 + HMPREF1058_RS04045 0.57 -0.3 128,354 + HMPREF1058_RS04045 0.58 -2.4 128,365 + HMPREF1058_RS04045 0.59 -0.5 128,446 + HMPREF1058_RS04045 0.69 -0.9 128,467 + HMPREF1058_RS04045 0.72 -1.2 128,498 + HMPREF1058_RS04045 0.76 -1.6 128,514 - HMPREF1058_RS04045 0.78 -2.7 128,517 - HMPREF1058_RS04045 0.78 +2.2 128,518 + HMPREF1058_RS04045 0.78 -0.2 128,519 - HMPREF1058_RS04045 0.78 -2.1 128,573 - HMPREF1058_RS04045 0.85 -0.8 128,573 - HMPREF1058_RS04045 0.85 -0.6 128,713 - +0.4 128,714 + -0.3 128,715 - -1.8 128,723 - +0.9 128,723 - -1.2 128,723 - -0.8 128,723 - -1.5 128,726 + -2.5 128,809 - HMPREF1058_RS04040 0.14 -0.6 128,836 - HMPREF1058_RS04040 0.18 -1.2 128,843 + HMPREF1058_RS04040 0.19 -1.0 128,846 - +0.0 128,848 - HMPREF1058_RS04040 0.20 -1.2 128,919 - HMPREF1058_RS04040 0.30 +1.2 128,988 + HMPREF1058_RS04040 0.40 +2.0 128,988 + HMPREF1058_RS04040 0.40 -0.4 128,992 - HMPREF1058_RS04040 0.40 +0.1 128,995 + HMPREF1058_RS04040 0.41 -0.0 128,995 + HMPREF1058_RS04040 0.41 +0.2 128,997 + HMPREF1058_RS04040 0.41 -0.1 128,998 - HMPREF1058_RS04040 0.41 -0.5 129,073 - HMPREF1058_RS04040 0.52 -0.2 129,167 + HMPREF1058_RS04040 0.65 -0.7 129,206 + HMPREF1058_RS04040 0.70 +0.0 129,206 + HMPREF1058_RS04040 0.70 -0.8 129,207 - HMPREF1058_RS04040 0.71 +0.0 129,221 + HMPREF1058_RS04040 0.73 +2.5 129,247 - HMPREF1058_RS04040 0.76 +2.8 129,298 + HMPREF1058_RS04040 0.83 -0.8 129,330 + HMPREF1058_RS04040 0.88 -2.2 129,345 - +0.6 129,362 - -0.8 129,373 - +0.8 129,399 + -0.8 129,433 + +0.3 129,443 + +0.6 129,444 - +2.2 129,555 - -0.7 129,555 - -1.9 129,555 - -0.6 129,631 - HMPREF1058_RS04035 0.32 +1.3 129,648 - HMPREF1058_RS04035 0.39 +1.0 129,648 - HMPREF1058_RS04035 0.39 -2.4 129,652 - HMPREF1058_RS04035 0.40 +1.1
Or see this region's nucleotide sequence