Experiment: pyrophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01755 and HMPREF1058_RS01750 are separated by 249 nucleotides HMPREF1058_RS01750 and HMPREF1058_RS01745 are separated by 83 nucleotides HMPREF1058_RS01745 and HMPREF1058_RS01740 overlap by 1 nucleotides
HMPREF1058_RS01755: HMPREF1058_RS01755 - DNA-directed RNA polymerase subunit omega, at 50,317 to 50,652
_RS01755
HMPREF1058_RS01750: HMPREF1058_RS01750 - DUF4293 domain-containing protein, at 50,902 to 51,354
_RS01750
HMPREF1058_RS01745: HMPREF1058_RS01745 - PorT family protein, at 51,438 to 52,121
_RS01745
HMPREF1058_RS01740: HMPREF1058_RS01740 - LysM peptidoglycan-binding domain-containing protein, at 52,121 to 53,929
_RS01740
Position (kb) 51
52
53 Strain fitness (log2 ratio) -2
-1
0
1
2 at 50.611 kb on + strand, within HMPREF1058_RS01755 at 50.645 kb on + strand at 50.645 kb on + strand at 50.786 kb on + strand at 50.880 kb on + strand at 50.880 kb on + strand at 51.353 kb on - strand at 51.367 kb on - strand at 51.369 kb on + strand at 51.373 kb on + strand at 51.373 kb on + strand at 51.374 kb on - strand at 51.415 kb on + strand at 51.449 kb on + strand at 51.449 kb on + strand at 51.449 kb on + strand at 51.449 kb on + strand at 51.450 kb on - strand at 51.450 kb on - strand at 51.450 kb on - strand at 51.450 kb on - strand at 51.461 kb on - strand at 51.461 kb on - strand at 51.547 kb on + strand, within HMPREF1058_RS01745 at 51.548 kb on - strand, within HMPREF1058_RS01745 at 51.548 kb on - strand, within HMPREF1058_RS01745 at 51.548 kb on - strand, within HMPREF1058_RS01745 at 51.588 kb on + strand, within HMPREF1058_RS01745 at 51.588 kb on + strand, within HMPREF1058_RS01745 at 51.588 kb on + strand, within HMPREF1058_RS01745 at 51.681 kb on + strand, within HMPREF1058_RS01745 at 51.877 kb on - strand, within HMPREF1058_RS01745 at 51.923 kb on + strand, within HMPREF1058_RS01745 at 51.923 kb on + strand, within HMPREF1058_RS01745 at 51.923 kb on + strand, within HMPREF1058_RS01745 at 51.923 kb on + strand, within HMPREF1058_RS01745 at 51.924 kb on - strand, within HMPREF1058_RS01745 at 51.924 kb on - strand, within HMPREF1058_RS01745 at 51.925 kb on + strand, within HMPREF1058_RS01745 at 51.925 kb on + strand, within HMPREF1058_RS01745 at 52.112 kb on - strand at 52.138 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyrophosphate 1 mM phosphorus source remove 50,611 + HMPREF1058_RS01755 0.88 +0.3 50,645 + +2.0 50,645 + -0.1 50,786 + -1.9 50,880 + +1.0 50,880 + -0.8 51,353 - -0.1 51,367 - -0.5 51,369 + +0.2 51,373 + +1.7 51,373 + -0.2 51,374 - -0.9 51,415 + -0.4 51,449 + -0.7 51,449 + -0.9 51,449 + -1.6 51,449 + +0.3 51,450 - -0.2 51,450 - +0.2 51,450 - -1.8 51,450 - -2.5 51,461 - +0.1 51,461 - +1.1 51,547 + HMPREF1058_RS01745 0.16 -0.5 51,548 - HMPREF1058_RS01745 0.16 -0.0 51,548 - HMPREF1058_RS01745 0.16 -2.0 51,548 - HMPREF1058_RS01745 0.16 +0.1 51,588 + HMPREF1058_RS01745 0.22 -0.2 51,588 + HMPREF1058_RS01745 0.22 -0.2 51,588 + HMPREF1058_RS01745 0.22 -2.2 51,681 + HMPREF1058_RS01745 0.36 -0.3 51,877 - HMPREF1058_RS01745 0.64 -2.5 51,923 + HMPREF1058_RS01745 0.71 -1.0 51,923 + HMPREF1058_RS01745 0.71 -0.2 51,923 + HMPREF1058_RS01745 0.71 -0.5 51,923 + HMPREF1058_RS01745 0.71 -2.6 51,924 - HMPREF1058_RS01745 0.71 -0.3 51,924 - HMPREF1058_RS01745 0.71 -1.9 51,925 + HMPREF1058_RS01745 0.71 -0.9 51,925 + HMPREF1058_RS01745 0.71 +0.1 52,112 - -0.9 52,138 + +0.5
Or see this region's nucleotide sequence