Experiment: pyrophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01710 and HMPREF1058_RS01705 are separated by 176 nucleotides HMPREF1058_RS01705 and HMPREF1058_RS01700 are separated by 145 nucleotides
HMPREF1058_RS01710: HMPREF1058_RS01710 - DUF4373 domain-containing protein, at 60,758 to 61,609
_RS01710
HMPREF1058_RS01705: HMPREF1058_RS01705 - Na+/H+ antiporter NhaC family protein, at 61,786 to 63,090
_RS01705
HMPREF1058_RS01700: HMPREF1058_RS01700 - altronate dehydratase, at 63,236 to 64,726
_RS01700
Position (kb) 61
62
63
64 Strain fitness (log2 ratio) -2
-1
0
1
2 at 60.858 kb on + strand, within HMPREF1058_RS01710 at 60.858 kb on + strand, within HMPREF1058_RS01710 at 60.859 kb on - strand, within HMPREF1058_RS01710 at 60.861 kb on - strand, within HMPREF1058_RS01710 at 60.874 kb on - strand, within HMPREF1058_RS01710 at 60.900 kb on - strand, within HMPREF1058_RS01710 at 61.151 kb on - strand, within HMPREF1058_RS01710 at 61.151 kb on - strand, within HMPREF1058_RS01710 at 61.357 kb on + strand, within HMPREF1058_RS01710 at 61.493 kb on + strand, within HMPREF1058_RS01710 at 61.493 kb on + strand, within HMPREF1058_RS01710 at 61.594 kb on - strand at 61.764 kb on + strand at 61.765 kb on - strand at 61.869 kb on + strand at 61.969 kb on - strand, within HMPREF1058_RS01705 at 62.148 kb on + strand, within HMPREF1058_RS01705 at 62.149 kb on - strand, within HMPREF1058_RS01705 at 62.150 kb on + strand, within HMPREF1058_RS01705 at 62.151 kb on - strand, within HMPREF1058_RS01705 at 62.766 kb on + strand at 62.975 kb on + strand at 63.016 kb on + strand at 63.017 kb on - strand at 63.073 kb on + strand at 63.140 kb on + strand at 63.141 kb on - strand at 63.149 kb on - strand at 63.149 kb on - strand at 63.151 kb on - strand at 63.238 kb on - strand at 63.277 kb on - strand at 63.326 kb on - strand at 63.326 kb on - strand at 63.327 kb on + strand at 63.328 kb on - strand at 63.328 kb on - strand at 63.328 kb on - strand at 63.332 kb on + strand at 63.332 kb on + strand at 63.670 kb on + strand, within HMPREF1058_RS01700 at 63.732 kb on + strand, within HMPREF1058_RS01700 at 63.733 kb on - strand, within HMPREF1058_RS01700 at 63.758 kb on + strand, within HMPREF1058_RS01700 at 63.758 kb on + strand, within HMPREF1058_RS01700 at 63.884 kb on - strand at 64.000 kb on - strand, within HMPREF1058_RS01700 at 64.067 kb on + strand, within HMPREF1058_RS01700
Per-strain Table
Position Strand Gene LocusTag Fraction pyrophosphate 1 mM phosphorus source remove 60,858 + HMPREF1058_RS01710 0.12 +0.3 60,858 + HMPREF1058_RS01710 0.12 +1.2 60,859 - HMPREF1058_RS01710 0.12 -1.7 60,861 - HMPREF1058_RS01710 0.12 +1.0 60,874 - HMPREF1058_RS01710 0.14 +0.4 60,900 - HMPREF1058_RS01710 0.17 +1.3 61,151 - HMPREF1058_RS01710 0.46 +0.1 61,151 - HMPREF1058_RS01710 0.46 -1.3 61,357 + HMPREF1058_RS01710 0.70 -0.8 61,493 + HMPREF1058_RS01710 0.86 -0.4 61,493 + HMPREF1058_RS01710 0.86 -1.9 61,594 - -1.0 61,764 + +0.3 61,765 - -0.5 61,869 + +0.1 61,969 - HMPREF1058_RS01705 0.14 -0.2 62,148 + HMPREF1058_RS01705 0.28 -0.2 62,149 - HMPREF1058_RS01705 0.28 -0.5 62,150 + HMPREF1058_RS01705 0.28 +0.5 62,151 - HMPREF1058_RS01705 0.28 -0.9 62,766 + -0.5 62,975 + -0.6 63,016 + -1.3 63,017 - -1.0 63,073 + +1.5 63,140 + -0.2 63,141 - -0.4 63,149 - +1.5 63,149 - +1.5 63,151 - +1.3 63,238 - +0.7 63,277 - +0.6 63,326 - +2.4 63,326 - +0.2 63,327 + +1.2 63,328 - -0.5 63,328 - +1.1 63,328 - -0.2 63,332 + +0.2 63,332 + +0.5 63,670 + HMPREF1058_RS01700 0.29 -0.9 63,732 + HMPREF1058_RS01700 0.33 -0.3 63,733 - HMPREF1058_RS01700 0.33 -0.5 63,758 + HMPREF1058_RS01700 0.35 -2.5 63,758 + HMPREF1058_RS01700 0.35 -0.7 63,884 - -0.0 64,000 - HMPREF1058_RS01700 0.51 -1.5 64,067 + HMPREF1058_RS01700 0.56 -0.3
Or see this region's nucleotide sequence