Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18290

Experiment: FSL 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS18295 and HMPREF1058_RS18290 are separated by 125 nucleotidesHMPREF1058_RS18290 and HMPREF1058_RS18285 are separated by 832 nucleotides HMPREF1058_RS18295: HMPREF1058_RS18295 - response regulator, at 205,726 to 210,129 _RS18295 HMPREF1058_RS18290: HMPREF1058_RS18290 - glycoside hydrolase family 2, at 210,255 to 212,879 _RS18290 HMPREF1058_RS18285: HMPREF1058_RS18285 - RNA-binding transcriptional accessory protein, at 213,712 to 215,841 _RS18285 Position (kb) 210 211 212 213Strain fitness (log2 ratio) -2 -1 0 1 2at 209.255 kb on + strand, within HMPREF1058_RS18295at 209.256 kb on - strand, within HMPREF1058_RS18295at 209.256 kb on - strand, within HMPREF1058_RS18295at 209.260 kb on - strand, within HMPREF1058_RS18295at 209.369 kb on - strand, within HMPREF1058_RS18295at 209.440 kb on - strand, within HMPREF1058_RS18295at 209.535 kb on - strand, within HMPREF1058_RS18295at 209.557 kb on - strand, within HMPREF1058_RS18295at 209.559 kb on - strand, within HMPREF1058_RS18295at 209.595 kb on + strand, within HMPREF1058_RS18295at 209.648 kb on - strand, within HMPREF1058_RS18295at 209.777 kb on + strandat 209.817 kb on - strandat 209.817 kb on - strandat 209.845 kb on + strandat 209.845 kb on + strandat 209.846 kb on - strandat 209.847 kb on + strandat 209.847 kb on + strandat 209.847 kb on + strandat 209.847 kb on + strandat 209.848 kb on - strandat 209.848 kb on - strandat 209.848 kb on - strandat 209.869 kb on + strandat 209.954 kb on - strandat 209.954 kb on - strandat 209.954 kb on - strandat 210.044 kb on + strandat 210.045 kb on - strandat 210.060 kb on + strandat 210.069 kb on + strandat 210.070 kb on - strandat 210.070 kb on - strandat 210.071 kb on + strandat 210.106 kb on + strandat 210.115 kb on + strandat 210.115 kb on + strandat 210.115 kb on + strandat 210.118 kb on - strandat 210.119 kb on + strandat 210.120 kb on - strandat 210.137 kb on + strandat 210.202 kb on - strandat 210.251 kb on + strandat 210.252 kb on - strandat 210.256 kb on + strandat 210.256 kb on + strandat 210.456 kb on + strandat 210.625 kb on - strand, within HMPREF1058_RS18290at 210.630 kb on - strand, within HMPREF1058_RS18290at 210.672 kb on - strand, within HMPREF1058_RS18290at 210.748 kb on + strand, within HMPREF1058_RS18290at 210.749 kb on - strand, within HMPREF1058_RS18290at 210.752 kb on + strand, within HMPREF1058_RS18290at 210.753 kb on - strand, within HMPREF1058_RS18290at 210.833 kb on + strand, within HMPREF1058_RS18290at 210.834 kb on - strandat 210.863 kb on - strand, within HMPREF1058_RS18290at 210.866 kb on + strand, within HMPREF1058_RS18290at 211.127 kb on - strand, within HMPREF1058_RS18290at 211.132 kb on + strand, within HMPREF1058_RS18290at 211.156 kb on + strand, within HMPREF1058_RS18290at 211.156 kb on + strand, within HMPREF1058_RS18290at 211.335 kb on - strand, within HMPREF1058_RS18290at 211.335 kb on - strand, within HMPREF1058_RS18290at 211.337 kb on + strand, within HMPREF1058_RS18290at 211.386 kb on - strand, within HMPREF1058_RS18290at 211.775 kb on + strand, within HMPREF1058_RS18290at 211.844 kb on - strand, within HMPREF1058_RS18290at 211.923 kb on - strand, within HMPREF1058_RS18290at 212.005 kb on + strand, within HMPREF1058_RS18290at 212.012 kb on - strand, within HMPREF1058_RS18290at 212.203 kb on + strand, within HMPREF1058_RS18290at 212.227 kb on - strand, within HMPREF1058_RS18290at 212.228 kb on + strand, within HMPREF1058_RS18290at 212.296 kb on - strand, within HMPREF1058_RS18290at 212.361 kb on - strand, within HMPREF1058_RS18290at 212.361 kb on - strand, within HMPREF1058_RS18290at 212.363 kb on - strand, within HMPREF1058_RS18290at 212.363 kb on - strand, within HMPREF1058_RS18290at 212.442 kb on + strandat 212.515 kb on - strand, within HMPREF1058_RS18290at 212.518 kb on + strand, within HMPREF1058_RS18290at 212.518 kb on + strand, within HMPREF1058_RS18290at 212.519 kb on - strand, within HMPREF1058_RS18290at 212.624 kb on - strandat 212.683 kb on - strandat 212.683 kb on - strandat 212.710 kb on - strandat 212.767 kb on + strandat 212.769 kb on + strandat 212.772 kb on + strandat 212.773 kb on - strandat 212.859 kb on + strandat 212.884 kb on - strandat 212.884 kb on - strandat 212.981 kb on - strandat 213.054 kb on + strandat 213.077 kb on - strandat 213.077 kb on - strandat 213.216 kb on + strandat 213.216 kb on + strandat 213.245 kb on - strandat 213.399 kb on - strandat 213.500 kb on + strandat 213.758 kb on + strandat 213.768 kb on - strandat 213.863 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C)
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209,255 + HMPREF1058_RS18295 0.80 -0.1
209,256 - HMPREF1058_RS18295 0.80 +0.9
209,256 - HMPREF1058_RS18295 0.80 +0.7
209,260 - HMPREF1058_RS18295 0.80 -2.3
209,369 - HMPREF1058_RS18295 0.83 +0.6
209,440 - HMPREF1058_RS18295 0.84 -0.3
209,535 - HMPREF1058_RS18295 0.86 -0.2
209,557 - HMPREF1058_RS18295 0.87 +0.5
209,559 - HMPREF1058_RS18295 0.87 -0.7
209,595 + HMPREF1058_RS18295 0.88 +0.3
209,648 - HMPREF1058_RS18295 0.89 +0.3
209,777 + +1.1
209,817 - -0.8
209,817 - -0.1
209,845 + -0.1
209,845 + -0.7
209,846 - -0.6
209,847 + +0.3
209,847 + +0.9
209,847 + -0.3
209,847 + -0.4
209,848 - +1.0
209,848 - -1.5
209,848 - -0.0
209,869 + -0.4
209,954 - -0.7
209,954 - +0.0
209,954 - +0.1
210,044 + +0.6
210,045 - +0.3
210,060 + -0.1
210,069 + -1.2
210,070 - -1.3
210,070 - +1.1
210,071 + +0.3
210,106 + +1.2
210,115 + -0.7
210,115 + -0.4
210,115 + -0.1
210,118 - -0.8
210,119 + -0.0
210,120 - -0.2
210,137 + +0.0
210,202 - -0.2
210,251 + +0.2
210,252 - -0.9
210,256 + -0.6
210,256 + -1.3
210,456 + -0.1
210,625 - HMPREF1058_RS18290 0.14 -0.1
210,630 - HMPREF1058_RS18290 0.14 +2.7
210,672 - HMPREF1058_RS18290 0.16 -1.4
210,748 + HMPREF1058_RS18290 0.19 -0.6
210,749 - HMPREF1058_RS18290 0.19 -0.7
210,752 + HMPREF1058_RS18290 0.19 -0.5
210,753 - HMPREF1058_RS18290 0.19 +1.7
210,833 + HMPREF1058_RS18290 0.22 +0.0
210,834 - +1.7
210,863 - HMPREF1058_RS18290 0.23 -0.1
210,866 + HMPREF1058_RS18290 0.23 -1.0
211,127 - HMPREF1058_RS18290 0.33 +0.0
211,132 + HMPREF1058_RS18290 0.33 -0.4
211,156 + HMPREF1058_RS18290 0.34 +1.0
211,156 + HMPREF1058_RS18290 0.34 +0.7
211,335 - HMPREF1058_RS18290 0.41 -2.4
211,335 - HMPREF1058_RS18290 0.41 +0.9
211,337 + HMPREF1058_RS18290 0.41 -0.5
211,386 - HMPREF1058_RS18290 0.43 -0.7
211,775 + HMPREF1058_RS18290 0.58 +0.9
211,844 - HMPREF1058_RS18290 0.61 -0.9
211,923 - HMPREF1058_RS18290 0.64 +0.9
212,005 + HMPREF1058_RS18290 0.67 -0.4
212,012 - HMPREF1058_RS18290 0.67 +0.2
212,203 + HMPREF1058_RS18290 0.74 -0.5
212,227 - HMPREF1058_RS18290 0.75 -0.7
212,228 + HMPREF1058_RS18290 0.75 +0.2
212,296 - HMPREF1058_RS18290 0.78 -2.5
212,361 - HMPREF1058_RS18290 0.80 +0.9
212,361 - HMPREF1058_RS18290 0.80 -0.1
212,363 - HMPREF1058_RS18290 0.80 -0.2
212,363 - HMPREF1058_RS18290 0.80 +1.9
212,442 + -0.1
212,515 - HMPREF1058_RS18290 0.86 -2.0
212,518 + HMPREF1058_RS18290 0.86 +0.2
212,518 + HMPREF1058_RS18290 0.86 +1.4
212,519 - HMPREF1058_RS18290 0.86 -0.4
212,624 - -1.0
212,683 - -1.4
212,683 - -0.1
212,710 - -0.6
212,767 + +0.2
212,769 + -0.4
212,772 + +2.4
212,773 - +0.1
212,859 + -0.0
212,884 - +0.1
212,884 - +0.3
212,981 - +1.9
213,054 + -0.3
213,077 - -0.3
213,077 - +0.5
213,216 + -0.5
213,216 + -0.5
213,245 - -1.5
213,399 - +0.7
213,500 + +0.3
213,758 + +0.2
213,768 - -1.0
213,863 + +0.6

Or see this region's nucleotide sequence