Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17495

Experiment: FSL 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17500 and HMPREF1058_RS17495 are separated by 84 nucleotidesHMPREF1058_RS17495 and HMPREF1058_RS17490 are separated by 129 nucleotides HMPREF1058_RS17500: HMPREF1058_RS17500 - beta-glycosidase, at 415,558 to 418,398 _RS17500 HMPREF1058_RS17495: HMPREF1058_RS17495 - DUF4981 domain-containing protein, at 418,483 to 421,674 _RS17495 HMPREF1058_RS17490: HMPREF1058_RS17490 - RagB/SusD family nutrient uptake outer membrane protein, at 421,804 to 423,303 _RS17490 Position (kb) 418 419 420 421 422Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 417.555 kb on + strand, within HMPREF1058_RS17500at 417.581 kb on + strand, within HMPREF1058_RS17500at 417.715 kb on - strand, within HMPREF1058_RS17500at 417.719 kb on - strand, within HMPREF1058_RS17500at 417.719 kb on - strand, within HMPREF1058_RS17500at 417.787 kb on + strand, within HMPREF1058_RS17500at 417.976 kb on - strand, within HMPREF1058_RS17500at 417.981 kb on + strand, within HMPREF1058_RS17500at 418.030 kb on + strand, within HMPREF1058_RS17500at 418.120 kb on - strandat 418.120 kb on - strandat 418.142 kb on - strandat 418.187 kb on + strandat 418.188 kb on - strandat 418.188 kb on - strandat 418.204 kb on + strandat 418.282 kb on + strandat 418.282 kb on + strandat 418.283 kb on - strandat 418.283 kb on - strandat 418.283 kb on - strandat 418.375 kb on + strandat 418.420 kb on + strandat 418.462 kb on - strandat 418.659 kb on + strandat 418.660 kb on - strandat 418.660 kb on - strandat 418.672 kb on - strandat 418.673 kb on + strandat 418.706 kb on - strandat 418.738 kb on - strandat 418.806 kb on - strand, within HMPREF1058_RS17495at 418.833 kb on + strand, within HMPREF1058_RS17495at 418.837 kb on + strand, within HMPREF1058_RS17495at 418.838 kb on - strand, within HMPREF1058_RS17495at 418.921 kb on + strand, within HMPREF1058_RS17495at 418.973 kb on + strand, within HMPREF1058_RS17495at 418.974 kb on - strand, within HMPREF1058_RS17495at 418.974 kb on - strand, within HMPREF1058_RS17495at 419.006 kb on + strand, within HMPREF1058_RS17495at 419.006 kb on + strand, within HMPREF1058_RS17495at 419.013 kb on + strand, within HMPREF1058_RS17495at 419.014 kb on - strand, within HMPREF1058_RS17495at 419.014 kb on - strand, within HMPREF1058_RS17495at 419.116 kb on - strand, within HMPREF1058_RS17495at 419.116 kb on - strand, within HMPREF1058_RS17495at 419.119 kb on + strand, within HMPREF1058_RS17495at 419.125 kb on + strand, within HMPREF1058_RS17495at 419.188 kb on - strand, within HMPREF1058_RS17495at 419.222 kb on + strand, within HMPREF1058_RS17495at 419.278 kb on + strand, within HMPREF1058_RS17495at 419.279 kb on - strand, within HMPREF1058_RS17495at 419.375 kb on - strand, within HMPREF1058_RS17495at 419.378 kb on - strand, within HMPREF1058_RS17495at 419.379 kb on + strand, within HMPREF1058_RS17495at 419.379 kb on + strand, within HMPREF1058_RS17495at 419.379 kb on + strand, within HMPREF1058_RS17495at 419.380 kb on - strand, within HMPREF1058_RS17495at 419.380 kb on - strand, within HMPREF1058_RS17495at 419.569 kb on + strand, within HMPREF1058_RS17495at 419.667 kb on - strand, within HMPREF1058_RS17495at 419.810 kb on + strand, within HMPREF1058_RS17495at 419.839 kb on - strand, within HMPREF1058_RS17495at 420.304 kb on - strand, within HMPREF1058_RS17495at 420.337 kb on + strand, within HMPREF1058_RS17495at 420.360 kb on - strand, within HMPREF1058_RS17495at 420.360 kb on - strand, within HMPREF1058_RS17495at 420.360 kb on - strand, within HMPREF1058_RS17495at 420.495 kb on + strandat 420.497 kb on + strand, within HMPREF1058_RS17495at 420.571 kb on + strand, within HMPREF1058_RS17495at 420.572 kb on - strand, within HMPREF1058_RS17495at 420.580 kb on - strand, within HMPREF1058_RS17495at 420.654 kb on + strand, within HMPREF1058_RS17495at 420.659 kb on - strand, within HMPREF1058_RS17495at 420.659 kb on - strand, within HMPREF1058_RS17495at 420.711 kb on + strand, within HMPREF1058_RS17495at 420.711 kb on + strand, within HMPREF1058_RS17495at 420.711 kb on + strand, within HMPREF1058_RS17495at 420.712 kb on - strand, within HMPREF1058_RS17495at 420.724 kb on - strand, within HMPREF1058_RS17495at 420.808 kb on - strand, within HMPREF1058_RS17495at 420.814 kb on + strand, within HMPREF1058_RS17495at 420.855 kb on + strand, within HMPREF1058_RS17495at 420.855 kb on + strand, within HMPREF1058_RS17495at 420.858 kb on - strandat 420.959 kb on + strand, within HMPREF1058_RS17495at 420.959 kb on + strand, within HMPREF1058_RS17495at 420.985 kb on - strand, within HMPREF1058_RS17495at 421.059 kb on + strand, within HMPREF1058_RS17495at 421.128 kb on + strand, within HMPREF1058_RS17495at 421.137 kb on + strand, within HMPREF1058_RS17495at 421.159 kb on - strand, within HMPREF1058_RS17495at 421.257 kb on + strand, within HMPREF1058_RS17495at 421.299 kb on + strand, within HMPREF1058_RS17495at 421.299 kb on + strand, within HMPREF1058_RS17495at 421.367 kb on + strandat 421.367 kb on + strandat 421.368 kb on - strandat 421.575 kb on + strandat 421.612 kb on + strandat 421.613 kb on - strandat 421.664 kb on + strandat 421.664 kb on + strandat 421.666 kb on + strandat 421.729 kb on + strandat 421.787 kb on + strandat 421.911 kb on + strandat 421.959 kb on + strand, within HMPREF1058_RS17490at 421.998 kb on + strand, within HMPREF1058_RS17490at 422.074 kb on + strand, within HMPREF1058_RS17490at 422.087 kb on + strand, within HMPREF1058_RS17490at 422.145 kb on - strand, within HMPREF1058_RS17490at 422.167 kb on - strand, within HMPREF1058_RS17490at 422.234 kb on + strand, within HMPREF1058_RS17490at 422.269 kb on + strand, within HMPREF1058_RS17490at 422.315 kb on - strand, within HMPREF1058_RS17490at 422.315 kb on - strand, within HMPREF1058_RS17490at 422.405 kb on + strandat 422.406 kb on - strand, within HMPREF1058_RS17490at 422.487 kb on + strand, within HMPREF1058_RS17490at 422.527 kb on - strand, within HMPREF1058_RS17490at 422.602 kb on - strand, within HMPREF1058_RS17490at 422.603 kb on + strand, within HMPREF1058_RS17490at 422.609 kb on + strand, within HMPREF1058_RS17490at 422.643 kb on - strand, within HMPREF1058_RS17490at 422.651 kb on + strand, within HMPREF1058_RS17490at 422.652 kb on - strand, within HMPREF1058_RS17490at 422.652 kb on - strand, within HMPREF1058_RS17490at 422.652 kb on - strand, within HMPREF1058_RS17490

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Per-strain Table

Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C)
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417,555 + HMPREF1058_RS17500 0.70 -1.0
417,581 + HMPREF1058_RS17500 0.71 -0.3
417,715 - HMPREF1058_RS17500 0.76 +0.2
417,719 - HMPREF1058_RS17500 0.76 +1.6
417,719 - HMPREF1058_RS17500 0.76 -0.8
417,787 + HMPREF1058_RS17500 0.78 -0.9
417,976 - HMPREF1058_RS17500 0.85 -0.6
417,981 + HMPREF1058_RS17500 0.85 +1.1
418,030 + HMPREF1058_RS17500 0.87 -1.9
418,120 - -2.5
418,120 - +0.8
418,142 - -1.7
418,187 + -1.0
418,188 - -0.8
418,188 - -0.8
418,204 + +1.5
418,282 + -1.0
418,282 + +1.3
418,283 - -1.4
418,283 - +1.1
418,283 - +1.0
418,375 + -0.6
418,420 + -2.3
418,462 - +0.6
418,659 + -0.2
418,660 - +1.1
418,660 - +0.1
418,672 - -2.2
418,673 + -1.4
418,706 - +0.2
418,738 - -1.3
418,806 - HMPREF1058_RS17495 0.10 -0.7
418,833 + HMPREF1058_RS17495 0.11 +0.4
418,837 + HMPREF1058_RS17495 0.11 -0.4
418,838 - HMPREF1058_RS17495 0.11 +0.4
418,921 + HMPREF1058_RS17495 0.14 +0.3
418,973 + HMPREF1058_RS17495 0.15 +0.3
418,974 - HMPREF1058_RS17495 0.15 -0.1
418,974 - HMPREF1058_RS17495 0.15 -0.4
419,006 + HMPREF1058_RS17495 0.16 +0.4
419,006 + HMPREF1058_RS17495 0.16 +0.4
419,013 + HMPREF1058_RS17495 0.17 +0.8
419,014 - HMPREF1058_RS17495 0.17 +0.4
419,014 - HMPREF1058_RS17495 0.17 +0.9
419,116 - HMPREF1058_RS17495 0.20 -1.5
419,116 - HMPREF1058_RS17495 0.20 -0.4
419,119 + HMPREF1058_RS17495 0.20 -0.5
419,125 + HMPREF1058_RS17495 0.20 +2.7
419,188 - HMPREF1058_RS17495 0.22 +0.1
419,222 + HMPREF1058_RS17495 0.23 +0.8
419,278 + HMPREF1058_RS17495 0.25 -0.1
419,279 - HMPREF1058_RS17495 0.25 -1.8
419,375 - HMPREF1058_RS17495 0.28 -0.4
419,378 - HMPREF1058_RS17495 0.28 -0.4
419,379 + HMPREF1058_RS17495 0.28 +0.4
419,379 + HMPREF1058_RS17495 0.28 -0.6
419,379 + HMPREF1058_RS17495 0.28 -1.7
419,380 - HMPREF1058_RS17495 0.28 +0.7
419,380 - HMPREF1058_RS17495 0.28 +0.1
419,569 + HMPREF1058_RS17495 0.34 +0.2
419,667 - HMPREF1058_RS17495 0.37 +1.4
419,810 + HMPREF1058_RS17495 0.42 +0.7
419,839 - HMPREF1058_RS17495 0.42 -0.1
420,304 - HMPREF1058_RS17495 0.57 +0.1
420,337 + HMPREF1058_RS17495 0.58 -0.5
420,360 - HMPREF1058_RS17495 0.59 -2.3
420,360 - HMPREF1058_RS17495 0.59 -2.3
420,360 - HMPREF1058_RS17495 0.59 -2.3
420,495 + +0.4
420,497 + HMPREF1058_RS17495 0.63 -0.0
420,571 + HMPREF1058_RS17495 0.65 +0.6
420,572 - HMPREF1058_RS17495 0.65 -0.1
420,580 - HMPREF1058_RS17495 0.66 +0.8
420,654 + HMPREF1058_RS17495 0.68 -0.1
420,659 - HMPREF1058_RS17495 0.68 -0.2
420,659 - HMPREF1058_RS17495 0.68 +0.1
420,711 + HMPREF1058_RS17495 0.70 -0.2
420,711 + HMPREF1058_RS17495 0.70 +1.1
420,711 + HMPREF1058_RS17495 0.70 +0.6
420,712 - HMPREF1058_RS17495 0.70 +2.0
420,724 - HMPREF1058_RS17495 0.70 -0.3
420,808 - HMPREF1058_RS17495 0.73 +0.2
420,814 + HMPREF1058_RS17495 0.73 -0.9
420,855 + HMPREF1058_RS17495 0.74 +0.1
420,855 + HMPREF1058_RS17495 0.74 -2.4
420,858 - -1.0
420,959 + HMPREF1058_RS17495 0.78 +1.0
420,959 + HMPREF1058_RS17495 0.78 +0.0
420,985 - HMPREF1058_RS17495 0.78 -1.1
421,059 + HMPREF1058_RS17495 0.81 +1.0
421,128 + HMPREF1058_RS17495 0.83 -1.3
421,137 + HMPREF1058_RS17495 0.83 -0.2
421,159 - HMPREF1058_RS17495 0.84 +0.5
421,257 + HMPREF1058_RS17495 0.87 -1.0
421,299 + HMPREF1058_RS17495 0.88 -1.5
421,299 + HMPREF1058_RS17495 0.88 +0.1
421,367 + -0.5
421,367 + +0.2
421,368 - -0.7
421,575 + +0.1
421,612 + -0.6
421,613 - -0.8
421,664 + +0.4
421,664 + +0.4
421,666 + +0.2
421,729 + +0.2
421,787 + +1.0
421,911 + -0.5
421,959 + HMPREF1058_RS17490 0.10 +0.2
421,998 + HMPREF1058_RS17490 0.13 -0.6
422,074 + HMPREF1058_RS17490 0.18 -0.4
422,087 + HMPREF1058_RS17490 0.19 -1.8
422,145 - HMPREF1058_RS17490 0.23 +0.7
422,167 - HMPREF1058_RS17490 0.24 -0.1
422,234 + HMPREF1058_RS17490 0.29 +1.1
422,269 + HMPREF1058_RS17490 0.31 +0.7
422,315 - HMPREF1058_RS17490 0.34 +0.6
422,315 - HMPREF1058_RS17490 0.34 -0.6
422,405 + +1.4
422,406 - HMPREF1058_RS17490 0.40 -0.5
422,487 + HMPREF1058_RS17490 0.46 -2.9
422,527 - HMPREF1058_RS17490 0.48 -0.2
422,602 - HMPREF1058_RS17490 0.53 +0.8
422,603 + HMPREF1058_RS17490 0.53 -1.6
422,609 + HMPREF1058_RS17490 0.54 -0.6
422,643 - HMPREF1058_RS17490 0.56 +0.0
422,651 + HMPREF1058_RS17490 0.56 -0.3
422,652 - HMPREF1058_RS17490 0.57 +0.3
422,652 - HMPREF1058_RS17490 0.57 -0.3
422,652 - HMPREF1058_RS17490 0.57 -0.4

Or see this region's nucleotide sequence