Experiment: FSL 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS13565 and HMPREF1058_RS0119475 are separated by 188 nucleotides HMPREF1058_RS0119475 and HMPREF1058_RS13560 are separated by 141 nucleotides HMPREF1058_RS13560 and HMPREF1058_RS13555 are separated by 28 nucleotides
HMPREF1058_RS13565: HMPREF1058_RS13565 - pectate lyase, at 1,436,854 to 1,438,467
_RS13565
HMPREF1058_RS0119475: HMPREF1058_RS0119475 - cupin domain-containing protein, at 1,438,656 to 1,439,147
_RS0119475
HMPREF1058_RS13560: HMPREF1058_RS13560 - beta-glycosidase, at 1,439,289 to 1,442,657
_RS13560
HMPREF1058_RS13555: HMPREF1058_RS13555 - hypothetical protein, at 1,442,686 to 1,445,232
_RS13555
Position (kb) 1439
1440
1441
1442
1443 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1438.305 kb on + strand, within HMPREF1058_RS13565 at 1438.350 kb on + strand at 1438.397 kb on - strand at 1438.517 kb on + strand at 1438.547 kb on + strand at 1438.548 kb on - strand at 1438.567 kb on + strand at 1438.573 kb on - strand at 1438.602 kb on + strand at 1438.603 kb on - strand at 1438.603 kb on - strand at 1438.606 kb on + strand at 1438.606 kb on + strand at 1438.608 kb on + strand at 1438.644 kb on - strand at 1438.670 kb on - strand at 1438.684 kb on - strand at 1438.708 kb on + strand, within HMPREF1058_RS0119475 at 1438.763 kb on + strand, within HMPREF1058_RS0119475 at 1438.868 kb on - strand, within HMPREF1058_RS0119475 at 1438.936 kb on + strand, within HMPREF1058_RS0119475 at 1438.936 kb on + strand, within HMPREF1058_RS0119475 at 1438.974 kb on + strand, within HMPREF1058_RS0119475 at 1438.975 kb on - strand at 1438.975 kb on - strand, within HMPREF1058_RS0119475 at 1439.078 kb on - strand, within HMPREF1058_RS0119475 at 1439.078 kb on - strand, within HMPREF1058_RS0119475 at 1439.101 kb on + strand at 1439.156 kb on + strand at 1439.157 kb on - strand at 1439.159 kb on - strand at 1439.159 kb on - strand at 1439.206 kb on + strand at 1439.207 kb on - strand at 1439.207 kb on - strand at 1439.218 kb on - strand at 1439.218 kb on - strand at 1439.278 kb on + strand at 1439.278 kb on + strand at 1439.365 kb on + strand at 1439.447 kb on + strand at 1439.447 kb on + strand at 1439.447 kb on + strand at 1439.511 kb on - strand at 1439.514 kb on + strand at 1439.514 kb on + strand at 1439.515 kb on - strand at 1439.792 kb on + strand, within HMPREF1058_RS13560 at 1439.795 kb on + strand, within HMPREF1058_RS13560 at 1439.927 kb on + strand, within HMPREF1058_RS13560 at 1439.957 kb on + strand, within HMPREF1058_RS13560 at 1439.983 kb on - strand, within HMPREF1058_RS13560 at 1439.999 kb on + strand, within HMPREF1058_RS13560 at 1440.000 kb on + strand, within HMPREF1058_RS13560 at 1440.020 kb on + strand, within HMPREF1058_RS13560 at 1440.020 kb on + strand, within HMPREF1058_RS13560 at 1440.021 kb on - strand, within HMPREF1058_RS13560 at 1440.042 kb on - strand, within HMPREF1058_RS13560 at 1440.118 kb on + strand at 1440.121 kb on + strand, within HMPREF1058_RS13560 at 1440.122 kb on - strand, within HMPREF1058_RS13560 at 1440.122 kb on - strand, within HMPREF1058_RS13560 at 1440.215 kb on + strand, within HMPREF1058_RS13560 at 1440.235 kb on - strand, within HMPREF1058_RS13560 at 1440.248 kb on - strand, within HMPREF1058_RS13560 at 1440.360 kb on + strand, within HMPREF1058_RS13560 at 1440.539 kb on - strand, within HMPREF1058_RS13560 at 1440.661 kb on + strand, within HMPREF1058_RS13560 at 1440.661 kb on + strand, within HMPREF1058_RS13560 at 1440.662 kb on - strand, within HMPREF1058_RS13560 at 1440.662 kb on - strand, within HMPREF1058_RS13560 at 1440.684 kb on + strand, within HMPREF1058_RS13560 at 1440.684 kb on + strand, within HMPREF1058_RS13560 at 1440.685 kb on - strand, within HMPREF1058_RS13560 at 1440.792 kb on - strand, within HMPREF1058_RS13560 at 1440.832 kb on + strand, within HMPREF1058_RS13560 at 1440.925 kb on + strand, within HMPREF1058_RS13560 at 1440.961 kb on + strand, within HMPREF1058_RS13560 at 1440.967 kb on + strand, within HMPREF1058_RS13560 at 1441.053 kb on - strand, within HMPREF1058_RS13560 at 1441.069 kb on + strand, within HMPREF1058_RS13560 at 1441.153 kb on + strand, within HMPREF1058_RS13560 at 1441.178 kb on + strand at 1441.202 kb on + strand, within HMPREF1058_RS13560 at 1441.203 kb on - strand, within HMPREF1058_RS13560 at 1441.203 kb on - strand, within HMPREF1058_RS13560 at 1441.203 kb on - strand, within HMPREF1058_RS13560 at 1441.293 kb on + strand, within HMPREF1058_RS13560 at 1441.331 kb on + strand, within HMPREF1058_RS13560 at 1441.331 kb on + strand, within HMPREF1058_RS13560 at 1441.334 kb on + strand, within HMPREF1058_RS13560 at 1441.336 kb on + strand, within HMPREF1058_RS13560 at 1441.456 kb on + strand, within HMPREF1058_RS13560 at 1441.457 kb on - strand, within HMPREF1058_RS13560 at 1441.481 kb on - strand, within HMPREF1058_RS13560 at 1441.761 kb on + strand, within HMPREF1058_RS13560 at 1441.761 kb on + strand at 1441.762 kb on - strand, within HMPREF1058_RS13560 at 1441.861 kb on - strand, within HMPREF1058_RS13560 at 1441.861 kb on - strand, within HMPREF1058_RS13560 at 1441.861 kb on - strand, within HMPREF1058_RS13560 at 1441.873 kb on + strand, within HMPREF1058_RS13560 at 1441.874 kb on - strand, within HMPREF1058_RS13560 at 1441.964 kb on + strand, within HMPREF1058_RS13560 at 1441.964 kb on + strand, within HMPREF1058_RS13560 at 1442.000 kb on + strand, within HMPREF1058_RS13560 at 1442.002 kb on + strand, within HMPREF1058_RS13560 at 1442.003 kb on - strand, within HMPREF1058_RS13560 at 1442.003 kb on - strand, within HMPREF1058_RS13560 at 1442.003 kb on - strand, within HMPREF1058_RS13560 at 1442.040 kb on - strand, within HMPREF1058_RS13560 at 1442.055 kb on + strand, within HMPREF1058_RS13560 at 1442.091 kb on - strand, within HMPREF1058_RS13560 at 1442.106 kb on - strand, within HMPREF1058_RS13560 at 1442.150 kb on + strand, within HMPREF1058_RS13560 at 1442.154 kb on + strand, within HMPREF1058_RS13560 at 1442.155 kb on - strand, within HMPREF1058_RS13560 at 1442.155 kb on - strand, within HMPREF1058_RS13560 at 1442.167 kb on - strand, within HMPREF1058_RS13560 at 1442.187 kb on - strand, within HMPREF1058_RS13560 at 1442.188 kb on + strand, within HMPREF1058_RS13560 at 1442.188 kb on + strand, within HMPREF1058_RS13560 at 1442.327 kb on + strand at 1442.352 kb on - strand at 1442.360 kb on + strand at 1442.360 kb on + strand at 1442.363 kb on + strand at 1442.396 kb on - strand at 1442.450 kb on + strand at 1442.451 kb on - strand at 1442.475 kb on + strand at 1442.476 kb on - strand at 1442.551 kb on - strand at 1442.619 kb on + strand at 1442.620 kb on - strand at 1442.620 kb on - strand at 1442.645 kb on + strand at 1442.661 kb on + strand at 1442.687 kb on + strand at 1442.707 kb on - strand at 1442.709 kb on - strand at 1442.783 kb on - strand at 1442.922 kb on + strand at 1442.923 kb on - strand at 1442.995 kb on - strand, within HMPREF1058_RS13555 at 1442.995 kb on - strand, within HMPREF1058_RS13555 at 1442.998 kb on - strand, within HMPREF1058_RS13555 at 1442.999 kb on + strand, within HMPREF1058_RS13555 at 1443.000 kb on - strand, within HMPREF1058_RS13555 at 1443.062 kb on + strand, within HMPREF1058_RS13555 at 1443.062 kb on + strand, within HMPREF1058_RS13555 at 1443.075 kb on - strand, within HMPREF1058_RS13555 at 1443.145 kb on - strand, within HMPREF1058_RS13555 at 1443.152 kb on + strand at 1443.171 kb on + strand, within HMPREF1058_RS13555 at 1443.303 kb on + strand, within HMPREF1058_RS13555 at 1443.303 kb on + strand, within HMPREF1058_RS13555 at 1443.303 kb on + strand, within HMPREF1058_RS13555 at 1443.303 kb on + strand, within HMPREF1058_RS13555 at 1443.304 kb on - strand, within HMPREF1058_RS13555 at 1443.351 kb on + strand, within HMPREF1058_RS13555 at 1443.352 kb on - strand, within HMPREF1058_RS13555 at 1443.382 kb on + strand, within HMPREF1058_RS13555 at 1443.383 kb on - strand, within HMPREF1058_RS13555 at 1443.384 kb on + strand, within HMPREF1058_RS13555 at 1443.495 kb on - strand, within HMPREF1058_RS13555 at 1443.519 kb on + strand, within HMPREF1058_RS13555 at 1443.527 kb on + strand, within HMPREF1058_RS13555 at 1443.568 kb on - strand, within HMPREF1058_RS13555 at 1443.595 kb on - strand, within HMPREF1058_RS13555
Per-strain Table
Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C) remove 1,438,305 + HMPREF1058_RS13565 0.90 -0.4 1,438,350 + -0.8 1,438,397 - -0.9 1,438,517 + -0.2 1,438,547 + -0.4 1,438,548 - -0.2 1,438,567 + -0.2 1,438,573 - -0.1 1,438,602 + +0.1 1,438,603 - -0.9 1,438,603 - -2.0 1,438,606 + +0.0 1,438,606 + -0.8 1,438,608 + +0.3 1,438,644 - -0.9 1,438,670 - -0.7 1,438,684 - +0.2 1,438,708 + HMPREF1058_RS0119475 0.11 -0.9 1,438,763 + HMPREF1058_RS0119475 0.22 +0.3 1,438,868 - HMPREF1058_RS0119475 0.43 +0.3 1,438,936 + HMPREF1058_RS0119475 0.57 -0.1 1,438,936 + HMPREF1058_RS0119475 0.57 +1.2 1,438,974 + HMPREF1058_RS0119475 0.65 +0.6 1,438,975 - -0.3 1,438,975 - HMPREF1058_RS0119475 0.65 +0.2 1,439,078 - HMPREF1058_RS0119475 0.86 -0.8 1,439,078 - HMPREF1058_RS0119475 0.86 -0.9 1,439,101 + +0.2 1,439,156 + -0.4 1,439,157 - -1.8 1,439,159 - +0.5 1,439,159 - -0.9 1,439,206 + +1.7 1,439,207 - -0.1 1,439,207 - -0.2 1,439,218 - -0.1 1,439,218 - -0.9 1,439,278 + -1.0 1,439,278 + +1.6 1,439,365 + +1.7 1,439,447 + -0.9 1,439,447 + -0.1 1,439,447 + +0.2 1,439,511 - +0.7 1,439,514 + -0.2 1,439,514 + -0.0 1,439,515 - +0.4 1,439,792 + HMPREF1058_RS13560 0.15 -0.2 1,439,795 + HMPREF1058_RS13560 0.15 +0.2 1,439,927 + HMPREF1058_RS13560 0.19 -0.2 1,439,957 + HMPREF1058_RS13560 0.20 -0.1 1,439,983 - HMPREF1058_RS13560 0.21 -0.9 1,439,999 + HMPREF1058_RS13560 0.21 +0.2 1,440,000 + HMPREF1058_RS13560 0.21 -0.7 1,440,020 + HMPREF1058_RS13560 0.22 -1.2 1,440,020 + HMPREF1058_RS13560 0.22 -0.2 1,440,021 - HMPREF1058_RS13560 0.22 +1.5 1,440,042 - HMPREF1058_RS13560 0.22 +0.1 1,440,118 + -0.3 1,440,121 + HMPREF1058_RS13560 0.25 +0.3 1,440,122 - HMPREF1058_RS13560 0.25 -0.9 1,440,122 - HMPREF1058_RS13560 0.25 -0.3 1,440,215 + HMPREF1058_RS13560 0.27 -0.2 1,440,235 - HMPREF1058_RS13560 0.28 -0.5 1,440,248 - HMPREF1058_RS13560 0.28 -0.3 1,440,360 + HMPREF1058_RS13560 0.32 -0.2 1,440,539 - HMPREF1058_RS13560 0.37 -0.5 1,440,661 + HMPREF1058_RS13560 0.41 -0.1 1,440,661 + HMPREF1058_RS13560 0.41 +0.1 1,440,662 - HMPREF1058_RS13560 0.41 -0.3 1,440,662 - HMPREF1058_RS13560 0.41 -0.1 1,440,684 + HMPREF1058_RS13560 0.41 -0.6 1,440,684 + HMPREF1058_RS13560 0.41 -0.9 1,440,685 - HMPREF1058_RS13560 0.41 -0.5 1,440,792 - HMPREF1058_RS13560 0.45 -0.1 1,440,832 + HMPREF1058_RS13560 0.46 -2.0 1,440,925 + HMPREF1058_RS13560 0.49 +0.3 1,440,961 + HMPREF1058_RS13560 0.50 -0.1 1,440,967 + HMPREF1058_RS13560 0.50 -0.2 1,441,053 - HMPREF1058_RS13560 0.52 -0.4 1,441,069 + HMPREF1058_RS13560 0.53 +1.9 1,441,153 + HMPREF1058_RS13560 0.55 +0.3 1,441,178 + -0.3 1,441,202 + HMPREF1058_RS13560 0.57 -0.6 1,441,203 - HMPREF1058_RS13560 0.57 -0.0 1,441,203 - HMPREF1058_RS13560 0.57 -0.3 1,441,203 - HMPREF1058_RS13560 0.57 -1.4 1,441,293 + HMPREF1058_RS13560 0.59 +1.0 1,441,331 + HMPREF1058_RS13560 0.61 -1.2 1,441,331 + HMPREF1058_RS13560 0.61 -0.3 1,441,334 + HMPREF1058_RS13560 0.61 -0.5 1,441,336 + HMPREF1058_RS13560 0.61 -0.8 1,441,456 + HMPREF1058_RS13560 0.64 -0.2 1,441,457 - HMPREF1058_RS13560 0.64 +0.7 1,441,481 - HMPREF1058_RS13560 0.65 +0.5 1,441,761 + HMPREF1058_RS13560 0.73 -0.1 1,441,761 + -0.8 1,441,762 - HMPREF1058_RS13560 0.73 +0.4 1,441,861 - HMPREF1058_RS13560 0.76 -0.0 1,441,861 - HMPREF1058_RS13560 0.76 +0.1 1,441,861 - HMPREF1058_RS13560 0.76 -0.5 1,441,873 + HMPREF1058_RS13560 0.77 -0.3 1,441,874 - HMPREF1058_RS13560 0.77 -0.4 1,441,964 + HMPREF1058_RS13560 0.79 -0.3 1,441,964 + HMPREF1058_RS13560 0.79 +0.1 1,442,000 + HMPREF1058_RS13560 0.80 +1.0 1,442,002 + HMPREF1058_RS13560 0.81 -0.3 1,442,003 - HMPREF1058_RS13560 0.81 +0.1 1,442,003 - HMPREF1058_RS13560 0.81 +0.2 1,442,003 - HMPREF1058_RS13560 0.81 -0.4 1,442,040 - HMPREF1058_RS13560 0.82 +0.6 1,442,055 + HMPREF1058_RS13560 0.82 +0.4 1,442,091 - HMPREF1058_RS13560 0.83 +0.2 1,442,106 - HMPREF1058_RS13560 0.84 +1.0 1,442,150 + HMPREF1058_RS13560 0.85 -0.3 1,442,154 + HMPREF1058_RS13560 0.85 +0.2 1,442,155 - HMPREF1058_RS13560 0.85 -0.3 1,442,155 - HMPREF1058_RS13560 0.85 -0.4 1,442,167 - HMPREF1058_RS13560 0.85 -0.4 1,442,187 - HMPREF1058_RS13560 0.86 -0.4 1,442,188 + HMPREF1058_RS13560 0.86 +0.3 1,442,188 + HMPREF1058_RS13560 0.86 +0.5 1,442,327 + -0.4 1,442,352 - +0.1 1,442,360 + +0.1 1,442,360 + +0.1 1,442,363 + -0.7 1,442,396 - -0.0 1,442,450 + -0.9 1,442,451 - +0.0 1,442,475 + -0.5 1,442,476 - +0.1 1,442,551 - +0.2 1,442,619 + -0.2 1,442,620 - -0.2 1,442,620 - +1.5 1,442,645 + -0.2 1,442,661 + -0.1 1,442,687 + -0.5 1,442,707 - +0.3 1,442,709 - +0.2 1,442,783 - -0.0 1,442,922 + +0.3 1,442,923 - +0.5 1,442,995 - HMPREF1058_RS13555 0.12 -0.7 1,442,995 - HMPREF1058_RS13555 0.12 +0.2 1,442,998 - HMPREF1058_RS13555 0.12 -0.6 1,442,999 + HMPREF1058_RS13555 0.12 +2.5 1,443,000 - HMPREF1058_RS13555 0.12 -0.6 1,443,062 + HMPREF1058_RS13555 0.15 -0.9 1,443,062 + HMPREF1058_RS13555 0.15 +0.2 1,443,075 - HMPREF1058_RS13555 0.15 -0.8 1,443,145 - HMPREF1058_RS13555 0.18 +0.0 1,443,152 + -0.7 1,443,171 + HMPREF1058_RS13555 0.19 +1.4 1,443,303 + HMPREF1058_RS13555 0.24 -0.5 1,443,303 + HMPREF1058_RS13555 0.24 -0.1 1,443,303 + HMPREF1058_RS13555 0.24 -0.7 1,443,303 + HMPREF1058_RS13555 0.24 +1.2 1,443,304 - HMPREF1058_RS13555 0.24 +0.5 1,443,351 + HMPREF1058_RS13555 0.26 -0.8 1,443,352 - HMPREF1058_RS13555 0.26 -0.2 1,443,382 + HMPREF1058_RS13555 0.27 -0.5 1,443,383 - HMPREF1058_RS13555 0.27 -0.5 1,443,384 + HMPREF1058_RS13555 0.27 +0.5 1,443,495 - HMPREF1058_RS13555 0.32 +0.0 1,443,519 + HMPREF1058_RS13555 0.33 +0.1 1,443,527 + HMPREF1058_RS13555 0.33 +0.1 1,443,568 - HMPREF1058_RS13555 0.35 +0.4 1,443,595 - HMPREF1058_RS13555 0.36 -0.8
Or see this region's nucleotide sequence