Experiment: FSL 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09120 and HMPREF1058_RS09115 are separated by 251 nucleotides HMPREF1058_RS09115 and HMPREF1058_RS09110 are separated by 895 nucleotides
HMPREF1058_RS09120: HMPREF1058_RS09120 - hypothetical protein, at 934,972 to 938,439
_RS09120
HMPREF1058_RS09115: HMPREF1058_RS09115 - alpha-galactosidase, at 938,691 to 940,847
_RS09115
HMPREF1058_RS09110: HMPREF1058_RS09110 - RNA polymerase sigma-70 factor, at 941,743 to 942,333
_RS09110
Position (kb) 938
939
940
941 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 937.745 kb on - strand, within HMPREF1058_RS09120 at 937.792 kb on + strand, within HMPREF1058_RS09120 at 937.850 kb on + strand, within HMPREF1058_RS09120 at 937.850 kb on + strand, within HMPREF1058_RS09120 at 937.894 kb on + strand, within HMPREF1058_RS09120 at 937.895 kb on - strand, within HMPREF1058_RS09120 at 937.895 kb on - strand, within HMPREF1058_RS09120 at 937.914 kb on + strand, within HMPREF1058_RS09120 at 937.919 kb on + strand, within HMPREF1058_RS09120 at 937.986 kb on - strand, within HMPREF1058_RS09120 at 938.053 kb on + strand, within HMPREF1058_RS09120 at 938.054 kb on - strand, within HMPREF1058_RS09120 at 938.097 kb on + strand at 938.137 kb on + strand at 938.167 kb on - strand at 938.351 kb on - strand at 938.379 kb on + strand at 938.423 kb on - strand at 938.425 kb on + strand at 938.487 kb on - strand at 938.574 kb on + strand at 938.612 kb on - strand at 938.625 kb on + strand at 938.626 kb on - strand at 938.627 kb on + strand at 938.627 kb on + strand at 938.627 kb on + strand at 938.628 kb on - strand at 938.732 kb on - strand at 938.867 kb on + strand at 938.898 kb on + strand at 938.942 kb on + strand, within HMPREF1058_RS09115 at 938.943 kb on - strand, within HMPREF1058_RS09115 at 938.944 kb on + strand, within HMPREF1058_RS09115 at 938.944 kb on + strand, within HMPREF1058_RS09115 at 938.945 kb on - strand, within HMPREF1058_RS09115 at 938.986 kb on + strand, within HMPREF1058_RS09115 at 938.987 kb on - strand, within HMPREF1058_RS09115 at 939.039 kb on - strand, within HMPREF1058_RS09115 at 939.078 kb on + strand, within HMPREF1058_RS09115 at 939.078 kb on + strand, within HMPREF1058_RS09115 at 939.158 kb on + strand, within HMPREF1058_RS09115 at 939.163 kb on - strand, within HMPREF1058_RS09115 at 939.163 kb on - strand, within HMPREF1058_RS09115 at 939.388 kb on + strand, within HMPREF1058_RS09115 at 939.429 kb on - strand, within HMPREF1058_RS09115 at 939.431 kb on + strand, within HMPREF1058_RS09115 at 939.432 kb on - strand, within HMPREF1058_RS09115 at 939.461 kb on + strand, within HMPREF1058_RS09115 at 939.528 kb on - strand, within HMPREF1058_RS09115 at 939.588 kb on + strand, within HMPREF1058_RS09115 at 939.617 kb on + strand, within HMPREF1058_RS09115 at 939.649 kb on - strand, within HMPREF1058_RS09115 at 939.713 kb on + strand, within HMPREF1058_RS09115 at 939.750 kb on + strand, within HMPREF1058_RS09115 at 939.857 kb on - strand, within HMPREF1058_RS09115 at 939.920 kb on + strand, within HMPREF1058_RS09115 at 939.960 kb on + strand, within HMPREF1058_RS09115 at 939.960 kb on + strand, within HMPREF1058_RS09115 at 940.012 kb on - strand, within HMPREF1058_RS09115 at 940.092 kb on - strand, within HMPREF1058_RS09115 at 940.101 kb on + strand, within HMPREF1058_RS09115 at 940.101 kb on + strand, within HMPREF1058_RS09115 at 940.102 kb on - strand, within HMPREF1058_RS09115 at 940.110 kb on + strand, within HMPREF1058_RS09115 at 940.135 kb on + strand, within HMPREF1058_RS09115 at 940.135 kb on + strand, within HMPREF1058_RS09115 at 940.136 kb on - strand, within HMPREF1058_RS09115 at 940.137 kb on + strand, within HMPREF1058_RS09115 at 940.140 kb on - strand, within HMPREF1058_RS09115 at 940.140 kb on - strand, within HMPREF1058_RS09115 at 940.161 kb on + strand, within HMPREF1058_RS09115 at 940.161 kb on + strand, within HMPREF1058_RS09115 at 940.161 kb on + strand, within HMPREF1058_RS09115 at 940.162 kb on - strand, within HMPREF1058_RS09115 at 940.162 kb on - strand, within HMPREF1058_RS09115 at 940.263 kb on - strand, within HMPREF1058_RS09115 at 940.263 kb on - strand, within HMPREF1058_RS09115 at 940.284 kb on - strand, within HMPREF1058_RS09115 at 940.307 kb on - strand, within HMPREF1058_RS09115 at 940.365 kb on - strand, within HMPREF1058_RS09115 at 940.383 kb on - strand, within HMPREF1058_RS09115 at 940.413 kb on - strand, within HMPREF1058_RS09115 at 940.497 kb on + strand, within HMPREF1058_RS09115 at 940.536 kb on + strand, within HMPREF1058_RS09115 at 940.563 kb on - strand, within HMPREF1058_RS09115 at 940.577 kb on + strand, within HMPREF1058_RS09115 at 940.577 kb on + strand, within HMPREF1058_RS09115 at 940.577 kb on + strand, within HMPREF1058_RS09115 at 940.577 kb on + strand, within HMPREF1058_RS09115 at 940.577 kb on + strand, within HMPREF1058_RS09115 at 940.577 kb on + strand, within HMPREF1058_RS09115 at 940.577 kb on + strand, within HMPREF1058_RS09115 at 940.582 kb on - strand, within HMPREF1058_RS09115 at 940.799 kb on + strand at 940.800 kb on - strand at 940.800 kb on - strand at 940.802 kb on + strand at 940.835 kb on - strand at 940.838 kb on - strand at 940.862 kb on + strand at 940.866 kb on + strand at 940.928 kb on + strand at 940.940 kb on - strand at 940.965 kb on + strand at 941.009 kb on - strand at 941.009 kb on - strand at 941.010 kb on + strand at 941.011 kb on - strand at 941.012 kb on + strand at 941.012 kb on + strand at 941.012 kb on + strand at 941.013 kb on - strand at 941.018 kb on - strand at 941.033 kb on - strand at 941.034 kb on + strand at 941.124 kb on - strand at 941.166 kb on - strand at 941.182 kb on - strand at 941.183 kb on + strand at 941.185 kb on + strand at 941.186 kb on - strand at 941.186 kb on - strand at 941.189 kb on + strand at 941.190 kb on - strand at 941.190 kb on - strand at 941.190 kb on - strand at 941.190 kb on - strand at 941.192 kb on - strand at 941.194 kb on - strand at 941.195 kb on + strand at 941.196 kb on - strand at 941.196 kb on - strand at 941.290 kb on + strand at 941.290 kb on + strand at 941.291 kb on - strand at 941.324 kb on + strand at 941.324 kb on + strand at 941.338 kb on + strand at 941.339 kb on - strand at 941.459 kb on - strand at 941.547 kb on - strand at 941.556 kb on - strand at 941.558 kb on - strand at 941.560 kb on - strand at 941.560 kb on - strand at 941.571 kb on - strand at 941.600 kb on + strand at 941.617 kb on - strand at 941.690 kb on - strand at 941.692 kb on + strand at 941.739 kb on + strand at 941.739 kb on + strand at 941.740 kb on - strand at 941.740 kb on - strand at 941.845 kb on + strand, within HMPREF1058_RS09110
Per-strain Table
Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C) remove 937,745 - HMPREF1058_RS09120 0.80 +0.2 937,792 + HMPREF1058_RS09120 0.81 -0.1 937,850 + HMPREF1058_RS09120 0.83 +0.2 937,850 + HMPREF1058_RS09120 0.83 +0.9 937,894 + HMPREF1058_RS09120 0.84 -0.2 937,895 - HMPREF1058_RS09120 0.84 -0.4 937,895 - HMPREF1058_RS09120 0.84 -0.0 937,914 + HMPREF1058_RS09120 0.85 -2.1 937,919 + HMPREF1058_RS09120 0.85 -1.2 937,986 - HMPREF1058_RS09120 0.87 +0.7 938,053 + HMPREF1058_RS09120 0.89 -1.0 938,054 - HMPREF1058_RS09120 0.89 +0.8 938,097 + +1.2 938,137 + +1.6 938,167 - +0.8 938,351 - -0.8 938,379 + -1.6 938,423 - +0.0 938,425 + -1.6 938,487 - +0.4 938,574 + +0.7 938,612 - +0.5 938,625 + -0.9 938,626 - +0.1 938,627 + +0.5 938,627 + -2.2 938,627 + +0.4 938,628 - -0.4 938,732 - -0.5 938,867 + -1.0 938,898 + +0.2 938,942 + HMPREF1058_RS09115 0.12 -0.4 938,943 - HMPREF1058_RS09115 0.12 -0.9 938,944 + HMPREF1058_RS09115 0.12 -0.5 938,944 + HMPREF1058_RS09115 0.12 -0.2 938,945 - HMPREF1058_RS09115 0.12 -0.5 938,986 + HMPREF1058_RS09115 0.14 -0.3 938,987 - HMPREF1058_RS09115 0.14 -0.2 939,039 - HMPREF1058_RS09115 0.16 -0.1 939,078 + HMPREF1058_RS09115 0.18 +0.0 939,078 + HMPREF1058_RS09115 0.18 -1.1 939,158 + HMPREF1058_RS09115 0.22 -0.0 939,163 - HMPREF1058_RS09115 0.22 +0.4 939,163 - HMPREF1058_RS09115 0.22 -0.2 939,388 + HMPREF1058_RS09115 0.32 -0.0 939,429 - HMPREF1058_RS09115 0.34 +1.8 939,431 + HMPREF1058_RS09115 0.34 -2.2 939,432 - HMPREF1058_RS09115 0.34 +0.7 939,461 + HMPREF1058_RS09115 0.36 +0.3 939,528 - HMPREF1058_RS09115 0.39 +1.5 939,588 + HMPREF1058_RS09115 0.42 +0.2 939,617 + HMPREF1058_RS09115 0.43 +0.5 939,649 - HMPREF1058_RS09115 0.44 +0.8 939,713 + HMPREF1058_RS09115 0.47 +0.8 939,750 + HMPREF1058_RS09115 0.49 -0.2 939,857 - HMPREF1058_RS09115 0.54 -0.5 939,920 + HMPREF1058_RS09115 0.57 -0.1 939,960 + HMPREF1058_RS09115 0.59 +0.7 939,960 + HMPREF1058_RS09115 0.59 -0.5 940,012 - HMPREF1058_RS09115 0.61 -0.2 940,092 - HMPREF1058_RS09115 0.65 -0.0 940,101 + HMPREF1058_RS09115 0.65 -0.1 940,101 + HMPREF1058_RS09115 0.65 -0.1 940,102 - HMPREF1058_RS09115 0.65 +0.6 940,110 + HMPREF1058_RS09115 0.66 +0.1 940,135 + HMPREF1058_RS09115 0.67 +0.5 940,135 + HMPREF1058_RS09115 0.67 -0.4 940,136 - HMPREF1058_RS09115 0.67 +0.4 940,137 + HMPREF1058_RS09115 0.67 +0.8 940,140 - HMPREF1058_RS09115 0.67 -0.7 940,140 - HMPREF1058_RS09115 0.67 -0.0 940,161 + HMPREF1058_RS09115 0.68 -0.4 940,161 + HMPREF1058_RS09115 0.68 -0.4 940,161 + HMPREF1058_RS09115 0.68 -0.7 940,162 - HMPREF1058_RS09115 0.68 +0.5 940,162 - HMPREF1058_RS09115 0.68 +0.5 940,263 - HMPREF1058_RS09115 0.73 +0.9 940,263 - HMPREF1058_RS09115 0.73 +0.1 940,284 - HMPREF1058_RS09115 0.74 -2.2 940,307 - HMPREF1058_RS09115 0.75 -0.1 940,365 - HMPREF1058_RS09115 0.78 +0.7 940,383 - HMPREF1058_RS09115 0.78 -0.1 940,413 - HMPREF1058_RS09115 0.80 +1.0 940,497 + HMPREF1058_RS09115 0.84 +1.2 940,536 + HMPREF1058_RS09115 0.86 -0.1 940,563 - HMPREF1058_RS09115 0.87 -0.1 940,577 + HMPREF1058_RS09115 0.87 -0.7 940,577 + HMPREF1058_RS09115 0.87 +0.0 940,577 + HMPREF1058_RS09115 0.87 -0.8 940,577 + HMPREF1058_RS09115 0.87 +0.1 940,577 + HMPREF1058_RS09115 0.87 +2.6 940,577 + HMPREF1058_RS09115 0.87 -0.6 940,577 + HMPREF1058_RS09115 0.87 +0.4 940,582 - HMPREF1058_RS09115 0.88 +0.0 940,799 + +0.7 940,800 - +0.1 940,800 - +0.9 940,802 + -0.3 940,835 - -0.3 940,838 - -0.2 940,862 + +0.7 940,866 + +3.5 940,928 + +0.3 940,940 - +0.2 940,965 + -0.1 941,009 - -0.4 941,009 - -1.0 941,010 + -0.7 941,011 - -0.3 941,012 + -0.1 941,012 + -0.9 941,012 + -0.7 941,013 - -0.1 941,018 - +0.5 941,033 - +1.3 941,034 + -1.0 941,124 - -0.6 941,166 - -0.3 941,182 - +0.1 941,183 + -0.4 941,185 + -0.5 941,186 - +0.3 941,186 - -0.6 941,189 + +0.2 941,190 - -0.6 941,190 - +0.1 941,190 - -0.0 941,190 - +0.1 941,192 - +2.4 941,194 - +0.1 941,195 + -0.1 941,196 - +0.3 941,196 - -0.0 941,290 + -0.3 941,290 + -0.1 941,291 - +0.3 941,324 + +1.0 941,324 + -0.9 941,338 + +0.9 941,339 - +0.0 941,459 - -0.5 941,547 - -0.2 941,556 - -0.2 941,558 - +0.4 941,560 - -0.1 941,560 - -0.7 941,571 - -0.1 941,600 + +0.2 941,617 - -0.3 941,690 - -1.2 941,692 + -0.9 941,739 + +0.0 941,739 + -0.2 941,740 - -0.0 941,740 - +0.4 941,845 + HMPREF1058_RS09110 0.17 -0.1
Or see this region's nucleotide sequence