Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08930

Experiment: FSL 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS08935 and HMPREF1058_RS08930 are separated by 395 nucleotidesHMPREF1058_RS08930 and HMPREF1058_RS08925 are separated by 115 nucleotidesHMPREF1058_RS08925 and HMPREF1058_RS08920 are separated by 25 nucleotides HMPREF1058_RS08935: HMPREF1058_RS08935 - outer membrane beta-barrel protein, at 986,942 to 989,509 _RS08935 HMPREF1058_RS08930: HMPREF1058_RS08930 - DUF4981 domain-containing protein, at 989,905 to 993,000 _RS08930 HMPREF1058_RS08925: HMPREF1058_RS08925 - ion transporter, at 993,116 to 993,973 _RS08925 HMPREF1058_RS08920: HMPREF1058_RS08920 - lytic transglycosylase domain-containing protein, at 993,999 to 994,997 _RS08920 Position (kb) 989 990 991 992 993 994Strain fitness (log2 ratio) -3 -2 -1 0 1at 988.973 kb on - strand, within HMPREF1058_RS08935at 988.981 kb on - strand, within HMPREF1058_RS08935at 989.002 kb on - strand, within HMPREF1058_RS08935at 989.006 kb on + strand, within HMPREF1058_RS08935at 989.006 kb on + strand, within HMPREF1058_RS08935at 989.009 kb on - strand, within HMPREF1058_RS08935at 989.010 kb on + strand, within HMPREF1058_RS08935at 989.011 kb on - strand, within HMPREF1058_RS08935at 989.011 kb on - strand, within HMPREF1058_RS08935at 989.021 kb on + strand, within HMPREF1058_RS08935at 989.033 kb on + strand, within HMPREF1058_RS08935at 989.090 kb on + strand, within HMPREF1058_RS08935at 989.117 kb on + strand, within HMPREF1058_RS08935at 989.118 kb on - strand, within HMPREF1058_RS08935at 989.124 kb on - strand, within HMPREF1058_RS08935at 989.189 kb on + strand, within HMPREF1058_RS08935at 989.189 kb on + strand, within HMPREF1058_RS08935at 989.348 kb on - strandat 989.463 kb on - strandat 989.523 kb on - strandat 989.523 kb on - strandat 989.533 kb on + strandat 989.543 kb on - strandat 989.543 kb on - strandat 989.558 kb on - strandat 989.643 kb on + strandat 989.783 kb on - strandat 989.783 kb on - strandat 989.783 kb on - strandat 989.827 kb on + strandat 989.828 kb on - strandat 989.828 kb on - strandat 989.911 kb on + strandat 989.950 kb on - strandat 989.957 kb on + strandat 989.977 kb on - strandat 989.977 kb on - strandat 989.978 kb on + strandat 990.019 kb on + strandat 990.020 kb on - strandat 990.070 kb on + strandat 990.163 kb on + strandat 990.166 kb on + strandat 990.167 kb on - strandat 990.249 kb on - strand, within HMPREF1058_RS08930at 990.254 kb on + strand, within HMPREF1058_RS08930at 990.345 kb on - strand, within HMPREF1058_RS08930at 990.345 kb on - strand, within HMPREF1058_RS08930at 990.482 kb on + strand, within HMPREF1058_RS08930at 990.482 kb on + strand, within HMPREF1058_RS08930at 990.485 kb on - strand, within HMPREF1058_RS08930at 990.513 kb on - strand, within HMPREF1058_RS08930at 990.530 kb on - strand, within HMPREF1058_RS08930at 990.530 kb on - strand, within HMPREF1058_RS08930at 990.596 kb on + strand, within HMPREF1058_RS08930at 990.597 kb on - strand, within HMPREF1058_RS08930at 990.622 kb on - strand, within HMPREF1058_RS08930at 990.701 kb on + strand, within HMPREF1058_RS08930at 990.702 kb on - strand, within HMPREF1058_RS08930at 991.076 kb on + strand, within HMPREF1058_RS08930at 991.076 kb on + strand, within HMPREF1058_RS08930at 991.076 kb on + strand, within HMPREF1058_RS08930at 991.077 kb on - strand, within HMPREF1058_RS08930at 991.077 kb on - strand, within HMPREF1058_RS08930at 991.077 kb on - strand, within HMPREF1058_RS08930at 991.136 kb on - strand, within HMPREF1058_RS08930at 991.177 kb on + strand, within HMPREF1058_RS08930at 991.178 kb on - strand, within HMPREF1058_RS08930at 991.185 kb on - strand, within HMPREF1058_RS08930at 991.283 kb on + strand, within HMPREF1058_RS08930at 991.284 kb on - strand, within HMPREF1058_RS08930at 991.386 kb on - strand, within HMPREF1058_RS08930at 991.461 kb on + strand, within HMPREF1058_RS08930at 991.491 kb on - strand, within HMPREF1058_RS08930at 991.496 kb on + strand, within HMPREF1058_RS08930at 991.497 kb on - strand, within HMPREF1058_RS08930at 991.499 kb on + strand, within HMPREF1058_RS08930at 991.499 kb on + strand, within HMPREF1058_RS08930at 991.500 kb on - strand, within HMPREF1058_RS08930at 991.516 kb on - strand, within HMPREF1058_RS08930at 991.521 kb on + strand, within HMPREF1058_RS08930at 991.521 kb on + strand, within HMPREF1058_RS08930at 991.589 kb on + strand, within HMPREF1058_RS08930at 991.672 kb on + strand, within HMPREF1058_RS08930at 991.673 kb on - strand, within HMPREF1058_RS08930at 991.673 kb on - strand, within HMPREF1058_RS08930at 991.673 kb on - strand, within HMPREF1058_RS08930at 991.687 kb on - strand, within HMPREF1058_RS08930at 991.708 kb on - strand, within HMPREF1058_RS08930at 991.762 kb on + strand, within HMPREF1058_RS08930at 991.804 kb on + strand, within HMPREF1058_RS08930at 991.816 kb on + strand, within HMPREF1058_RS08930at 991.817 kb on - strand, within HMPREF1058_RS08930at 991.893 kb on + strand, within HMPREF1058_RS08930at 991.893 kb on + strand, within HMPREF1058_RS08930at 991.893 kb on + strand, within HMPREF1058_RS08930at 991.894 kb on - strand, within HMPREF1058_RS08930at 991.909 kb on + strand, within HMPREF1058_RS08930at 991.909 kb on + strand, within HMPREF1058_RS08930at 991.914 kb on - strand, within HMPREF1058_RS08930at 991.914 kb on - strand, within HMPREF1058_RS08930at 992.018 kb on - strand, within HMPREF1058_RS08930at 992.018 kb on - strand, within HMPREF1058_RS08930at 992.067 kb on + strand, within HMPREF1058_RS08930at 992.067 kb on + strand, within HMPREF1058_RS08930at 992.072 kb on - strand, within HMPREF1058_RS08930at 992.072 kb on - strand, within HMPREF1058_RS08930at 992.076 kb on - strand, within HMPREF1058_RS08930at 992.177 kb on - strand, within HMPREF1058_RS08930at 992.266 kb on + strand, within HMPREF1058_RS08930at 992.305 kb on + strand, within HMPREF1058_RS08930at 992.305 kb on + strand, within HMPREF1058_RS08930at 992.306 kb on - strand, within HMPREF1058_RS08930at 992.365 kb on - strand, within HMPREF1058_RS08930at 992.419 kb on + strand, within HMPREF1058_RS08930at 992.498 kb on + strand, within HMPREF1058_RS08930at 992.499 kb on - strand, within HMPREF1058_RS08930at 992.499 kb on - strand, within HMPREF1058_RS08930at 992.499 kb on - strand, within HMPREF1058_RS08930at 992.664 kb on - strand, within HMPREF1058_RS08930at 992.667 kb on + strand, within HMPREF1058_RS08930at 992.668 kb on - strand, within HMPREF1058_RS08930at 992.876 kb on + strandat 992.912 kb on - strandat 992.985 kb on + strandat 993.004 kb on - strandat 993.004 kb on - strandat 993.007 kb on - strandat 993.059 kb on + strandat 993.060 kb on - strandat 993.115 kb on + strandat 993.156 kb on + strandat 993.188 kb on + strandat 993.289 kb on + strand, within HMPREF1058_RS08925at 993.338 kb on + strand, within HMPREF1058_RS08925at 993.368 kb on + strand, within HMPREF1058_RS08925at 993.368 kb on + strand, within HMPREF1058_RS08925at 993.384 kb on - strand, within HMPREF1058_RS08925at 993.384 kb on - strand, within HMPREF1058_RS08925at 993.408 kb on - strand, within HMPREF1058_RS08925at 993.408 kb on - strand, within HMPREF1058_RS08925at 993.451 kb on - strand, within HMPREF1058_RS08925at 993.456 kb on + strand, within HMPREF1058_RS08925at 993.457 kb on - strand, within HMPREF1058_RS08925at 993.458 kb on + strand, within HMPREF1058_RS08925at 993.458 kb on + strand, within HMPREF1058_RS08925at 993.459 kb on - strand, within HMPREF1058_RS08925at 993.459 kb on - strand, within HMPREF1058_RS08925at 993.459 kb on - strand, within HMPREF1058_RS08925at 993.459 kb on - strand, within HMPREF1058_RS08925at 993.460 kb on + strand, within HMPREF1058_RS08925at 993.460 kb on + strand, within HMPREF1058_RS08925at 993.460 kb on + strand, within HMPREF1058_RS08925at 993.460 kb on + strand, within HMPREF1058_RS08925at 993.461 kb on - strand, within HMPREF1058_RS08925at 993.461 kb on - strand, within HMPREF1058_RS08925at 993.461 kb on - strand, within HMPREF1058_RS08925at 993.463 kb on - strand, within HMPREF1058_RS08925at 993.489 kb on - strand, within HMPREF1058_RS08925at 993.653 kb on - strandat 993.663 kb on - strand, within HMPREF1058_RS08925at 993.663 kb on - strand, within HMPREF1058_RS08925at 993.663 kb on - strand, within HMPREF1058_RS08925at 993.665 kb on - strand, within HMPREF1058_RS08925at 993.703 kb on + strand, within HMPREF1058_RS08925at 993.715 kb on + strand, within HMPREF1058_RS08925at 993.715 kb on + strand, within HMPREF1058_RS08925at 993.804 kb on + strand, within HMPREF1058_RS08925at 993.810 kb on + strand, within HMPREF1058_RS08925at 993.948 kb on - strandat 993.987 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C)
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988,973 - HMPREF1058_RS08935 0.79 +1.7
988,981 - HMPREF1058_RS08935 0.79 -0.3
989,002 - HMPREF1058_RS08935 0.80 -0.5
989,006 + HMPREF1058_RS08935 0.80 +0.5
989,006 + HMPREF1058_RS08935 0.80 -1.5
989,009 - HMPREF1058_RS08935 0.80 +0.2
989,010 + HMPREF1058_RS08935 0.81 +0.1
989,011 - HMPREF1058_RS08935 0.81 -0.2
989,011 - HMPREF1058_RS08935 0.81 -0.6
989,021 + HMPREF1058_RS08935 0.81 -1.7
989,033 + HMPREF1058_RS08935 0.81 +0.5
989,090 + HMPREF1058_RS08935 0.84 -0.2
989,117 + HMPREF1058_RS08935 0.85 -0.4
989,118 - HMPREF1058_RS08935 0.85 +0.4
989,124 - HMPREF1058_RS08935 0.85 -0.2
989,189 + HMPREF1058_RS08935 0.88 +0.8
989,189 + HMPREF1058_RS08935 0.88 +0.7
989,348 - -0.8
989,463 - -0.0
989,523 - +0.5
989,523 - -0.3
989,533 + -0.6
989,543 - -1.2
989,543 - +0.2
989,558 - -0.2
989,643 + +0.5
989,783 - -0.1
989,783 - -0.8
989,783 - -0.1
989,827 + +0.1
989,828 - -3.0
989,828 - -0.4
989,911 + -0.0
989,950 - -0.3
989,957 + -0.2
989,977 - -0.6
989,977 - -0.2
989,978 + -0.9
990,019 + -0.8
990,020 - +0.2
990,070 + -0.6
990,163 + -0.5
990,166 + +0.0
990,167 - -0.6
990,249 - HMPREF1058_RS08930 0.11 -0.5
990,254 + HMPREF1058_RS08930 0.11 -0.2
990,345 - HMPREF1058_RS08930 0.14 -0.1
990,345 - HMPREF1058_RS08930 0.14 -0.5
990,482 + HMPREF1058_RS08930 0.19 +1.2
990,482 + HMPREF1058_RS08930 0.19 +1.4
990,485 - HMPREF1058_RS08930 0.19 -1.7
990,513 - HMPREF1058_RS08930 0.20 -0.3
990,530 - HMPREF1058_RS08930 0.20 -0.7
990,530 - HMPREF1058_RS08930 0.20 -0.7
990,596 + HMPREF1058_RS08930 0.22 -0.8
990,597 - HMPREF1058_RS08930 0.22 -0.0
990,622 - HMPREF1058_RS08930 0.23 +0.1
990,701 + HMPREF1058_RS08930 0.26 +0.2
990,702 - HMPREF1058_RS08930 0.26 -0.5
991,076 + HMPREF1058_RS08930 0.38 +0.4
991,076 + HMPREF1058_RS08930 0.38 -0.0
991,076 + HMPREF1058_RS08930 0.38 -0.8
991,077 - HMPREF1058_RS08930 0.38 -2.4
991,077 - HMPREF1058_RS08930 0.38 -0.6
991,077 - HMPREF1058_RS08930 0.38 -0.0
991,136 - HMPREF1058_RS08930 0.40 -1.0
991,177 + HMPREF1058_RS08930 0.41 -0.4
991,178 - HMPREF1058_RS08930 0.41 -0.9
991,185 - HMPREF1058_RS08930 0.41 -0.5
991,283 + HMPREF1058_RS08930 0.45 -1.0
991,284 - HMPREF1058_RS08930 0.45 -0.4
991,386 - HMPREF1058_RS08930 0.48 -0.2
991,461 + HMPREF1058_RS08930 0.50 +0.2
991,491 - HMPREF1058_RS08930 0.51 -0.4
991,496 + HMPREF1058_RS08930 0.51 -0.4
991,497 - HMPREF1058_RS08930 0.51 -1.8
991,499 + HMPREF1058_RS08930 0.51 +0.2
991,499 + HMPREF1058_RS08930 0.51 -2.5
991,500 - HMPREF1058_RS08930 0.52 +0.4
991,516 - HMPREF1058_RS08930 0.52 -1.6
991,521 + HMPREF1058_RS08930 0.52 -0.3
991,521 + HMPREF1058_RS08930 0.52 -0.9
991,589 + HMPREF1058_RS08930 0.54 -1.0
991,672 + HMPREF1058_RS08930 0.57 -0.8
991,673 - HMPREF1058_RS08930 0.57 -0.3
991,673 - HMPREF1058_RS08930 0.57 -1.2
991,673 - HMPREF1058_RS08930 0.57 +0.1
991,687 - HMPREF1058_RS08930 0.58 -1.1
991,708 - HMPREF1058_RS08930 0.58 -1.5
991,762 + HMPREF1058_RS08930 0.60 -0.7
991,804 + HMPREF1058_RS08930 0.61 -0.6
991,816 + HMPREF1058_RS08930 0.62 -0.4
991,817 - HMPREF1058_RS08930 0.62 -0.1
991,893 + HMPREF1058_RS08930 0.64 -1.4
991,893 + HMPREF1058_RS08930 0.64 -0.6
991,893 + HMPREF1058_RS08930 0.64 -0.6
991,894 - HMPREF1058_RS08930 0.64 +0.9
991,909 + HMPREF1058_RS08930 0.65 -1.6
991,909 + HMPREF1058_RS08930 0.65 -0.8
991,914 - HMPREF1058_RS08930 0.65 -0.3
991,914 - HMPREF1058_RS08930 0.65 -0.6
992,018 - HMPREF1058_RS08930 0.68 -2.0
992,018 - HMPREF1058_RS08930 0.68 -0.3
992,067 + HMPREF1058_RS08930 0.70 -0.3
992,067 + HMPREF1058_RS08930 0.70 -1.2
992,072 - HMPREF1058_RS08930 0.70 -1.2
992,072 - HMPREF1058_RS08930 0.70 -0.9
992,076 - HMPREF1058_RS08930 0.70 +0.5
992,177 - HMPREF1058_RS08930 0.73 +0.5
992,266 + HMPREF1058_RS08930 0.76 -0.5
992,305 + HMPREF1058_RS08930 0.78 -0.7
992,305 + HMPREF1058_RS08930 0.78 -1.8
992,306 - HMPREF1058_RS08930 0.78 -0.6
992,365 - HMPREF1058_RS08930 0.79 -0.0
992,419 + HMPREF1058_RS08930 0.81 -0.4
992,498 + HMPREF1058_RS08930 0.84 -0.1
992,499 - HMPREF1058_RS08930 0.84 -1.4
992,499 - HMPREF1058_RS08930 0.84 +1.5
992,499 - HMPREF1058_RS08930 0.84 -0.3
992,664 - HMPREF1058_RS08930 0.89 -0.4
992,667 + HMPREF1058_RS08930 0.89 -0.3
992,668 - HMPREF1058_RS08930 0.89 -0.1
992,876 + -0.3
992,912 - -0.7
992,985 + +0.6
993,004 - -2.0
993,004 - -0.1
993,007 - -1.3
993,059 + -0.8
993,060 - +0.1
993,115 + +0.4
993,156 + -0.4
993,188 + +0.4
993,289 + HMPREF1058_RS08925 0.20 -0.0
993,338 + HMPREF1058_RS08925 0.26 +0.2
993,368 + HMPREF1058_RS08925 0.29 -0.2
993,368 + HMPREF1058_RS08925 0.29 -0.0
993,384 - HMPREF1058_RS08925 0.31 -1.2
993,384 - HMPREF1058_RS08925 0.31 -0.4
993,408 - HMPREF1058_RS08925 0.34 +0.2
993,408 - HMPREF1058_RS08925 0.34 -0.1
993,451 - HMPREF1058_RS08925 0.39 -0.1
993,456 + HMPREF1058_RS08925 0.40 -0.9
993,457 - HMPREF1058_RS08925 0.40 -0.2
993,458 + HMPREF1058_RS08925 0.40 -1.2
993,458 + HMPREF1058_RS08925 0.40 -0.6
993,459 - HMPREF1058_RS08925 0.40 +0.2
993,459 - HMPREF1058_RS08925 0.40 +0.1
993,459 - HMPREF1058_RS08925 0.40 -1.4
993,459 - HMPREF1058_RS08925 0.40 -0.0
993,460 + HMPREF1058_RS08925 0.40 -2.5
993,460 + HMPREF1058_RS08925 0.40 +0.8
993,460 + HMPREF1058_RS08925 0.40 -0.4
993,460 + HMPREF1058_RS08925 0.40 -0.5
993,461 - HMPREF1058_RS08925 0.40 -1.0
993,461 - HMPREF1058_RS08925 0.40 -0.2
993,461 - HMPREF1058_RS08925 0.40 -1.2
993,463 - HMPREF1058_RS08925 0.40 -1.1
993,489 - HMPREF1058_RS08925 0.43 -1.1
993,653 - +1.5
993,663 - HMPREF1058_RS08925 0.64 +0.2
993,663 - HMPREF1058_RS08925 0.64 -0.1
993,663 - HMPREF1058_RS08925 0.64 -0.6
993,665 - HMPREF1058_RS08925 0.64 +0.0
993,703 + HMPREF1058_RS08925 0.68 -0.4
993,715 + HMPREF1058_RS08925 0.70 -0.4
993,715 + HMPREF1058_RS08925 0.70 +1.1
993,804 + HMPREF1058_RS08925 0.80 -1.0
993,810 + HMPREF1058_RS08925 0.81 +1.7
993,948 - +0.4
993,987 + -0.5

Or see this region's nucleotide sequence