Experiment: FSL 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06135 and HMPREF1058_RS06130 are separated by 292 nucleotides HMPREF1058_RS06130 and HMPREF1058_RS06125 are separated by 759 nucleotides
HMPREF1058_RS06135: HMPREF1058_RS06135 - PorT family protein, at 546,506 to 547,186
_RS06135
HMPREF1058_RS06130: HMPREF1058_RS06130 - beta-galactosidase, at 547,479 to 549,518
_RS06130
HMPREF1058_RS06125: HMPREF1058_RS06125 - hypothetical protein, at 550,278 to 550,706
_RS06125
Position (kb) 547
548
549
550 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 546.572 kb on - strand at 546.655 kb on - strand, within HMPREF1058_RS06135 at 546.668 kb on - strand, within HMPREF1058_RS06135 at 546.676 kb on + strand, within HMPREF1058_RS06135 at 546.680 kb on - strand, within HMPREF1058_RS06135 at 546.702 kb on + strand, within HMPREF1058_RS06135 at 546.704 kb on + strand, within HMPREF1058_RS06135 at 546.708 kb on - strand, within HMPREF1058_RS06135 at 546.709 kb on + strand, within HMPREF1058_RS06135 at 546.716 kb on - strand, within HMPREF1058_RS06135 at 546.723 kb on - strand, within HMPREF1058_RS06135 at 546.733 kb on + strand, within HMPREF1058_RS06135 at 546.746 kb on + strand, within HMPREF1058_RS06135 at 546.746 kb on + strand, within HMPREF1058_RS06135 at 546.749 kb on - strand, within HMPREF1058_RS06135 at 546.752 kb on - strand, within HMPREF1058_RS06135 at 546.752 kb on - strand, within HMPREF1058_RS06135 at 546.763 kb on + strand, within HMPREF1058_RS06135 at 546.764 kb on - strand, within HMPREF1058_RS06135 at 546.868 kb on - strand, within HMPREF1058_RS06135 at 546.875 kb on + strand, within HMPREF1058_RS06135 at 546.875 kb on + strand, within HMPREF1058_RS06135 at 546.875 kb on + strand, within HMPREF1058_RS06135 at 546.876 kb on - strand, within HMPREF1058_RS06135 at 546.876 kb on - strand, within HMPREF1058_RS06135 at 546.876 kb on - strand, within HMPREF1058_RS06135 at 546.876 kb on - strand, within HMPREF1058_RS06135 at 546.879 kb on + strand, within HMPREF1058_RS06135 at 546.879 kb on + strand, within HMPREF1058_RS06135 at 546.917 kb on + strand, within HMPREF1058_RS06135 at 546.917 kb on + strand, within HMPREF1058_RS06135 at 546.918 kb on - strand, within HMPREF1058_RS06135 at 546.924 kb on + strand, within HMPREF1058_RS06135 at 546.928 kb on + strand, within HMPREF1058_RS06135 at 547.047 kb on + strand, within HMPREF1058_RS06135 at 547.125 kb on + strand at 547.125 kb on + strand at 547.125 kb on + strand at 547.126 kb on - strand at 547.137 kb on - strand at 547.137 kb on - strand at 547.165 kb on + strand at 547.215 kb on + strand at 547.220 kb on - strand at 547.316 kb on + strand at 547.319 kb on + strand at 547.320 kb on - strand at 547.320 kb on - strand at 547.320 kb on - strand at 547.321 kb on + strand at 547.322 kb on - strand at 547.351 kb on - strand at 547.451 kb on - strand at 547.460 kb on + strand at 547.462 kb on + strand at 547.474 kb on + strand at 547.475 kb on - strand at 547.563 kb on - strand at 547.563 kb on - strand at 547.601 kb on - strand at 547.619 kb on + strand at 547.620 kb on - strand at 547.678 kb on - strand at 547.690 kb on + strand, within HMPREF1058_RS06130 at 547.694 kb on + strand, within HMPREF1058_RS06130 at 547.700 kb on + strand, within HMPREF1058_RS06130 at 547.704 kb on - strand, within HMPREF1058_RS06130 at 547.704 kb on - strand, within HMPREF1058_RS06130 at 547.802 kb on + strand, within HMPREF1058_RS06130 at 547.803 kb on - strand, within HMPREF1058_RS06130 at 547.803 kb on - strand, within HMPREF1058_RS06130 at 547.803 kb on - strand, within HMPREF1058_RS06130 at 547.803 kb on - strand, within HMPREF1058_RS06130 at 547.804 kb on + strand, within HMPREF1058_RS06130 at 547.804 kb on + strand, within HMPREF1058_RS06130 at 547.805 kb on - strand, within HMPREF1058_RS06130 at 547.969 kb on + strand, within HMPREF1058_RS06130 at 547.970 kb on - strand, within HMPREF1058_RS06130 at 547.970 kb on - strand at 547.998 kb on - strand, within HMPREF1058_RS06130 at 548.014 kb on - strand, within HMPREF1058_RS06130 at 548.039 kb on - strand, within HMPREF1058_RS06130 at 548.039 kb on - strand, within HMPREF1058_RS06130 at 548.083 kb on + strand, within HMPREF1058_RS06130 at 548.084 kb on - strand, within HMPREF1058_RS06130 at 548.094 kb on - strand, within HMPREF1058_RS06130 at 548.203 kb on + strand, within HMPREF1058_RS06130 at 548.209 kb on + strand, within HMPREF1058_RS06130 at 548.218 kb on + strand, within HMPREF1058_RS06130 at 548.219 kb on - strand, within HMPREF1058_RS06130 at 548.275 kb on - strand, within HMPREF1058_RS06130 at 548.341 kb on + strand, within HMPREF1058_RS06130 at 548.410 kb on + strand, within HMPREF1058_RS06130 at 548.411 kb on - strand, within HMPREF1058_RS06130 at 548.480 kb on + strand, within HMPREF1058_RS06130 at 548.539 kb on - strand, within HMPREF1058_RS06130 at 548.539 kb on - strand, within HMPREF1058_RS06130 at 548.540 kb on + strand, within HMPREF1058_RS06130 at 548.680 kb on + strand, within HMPREF1058_RS06130 at 548.681 kb on - strand, within HMPREF1058_RS06130 at 548.691 kb on + strand, within HMPREF1058_RS06130 at 548.691 kb on + strand, within HMPREF1058_RS06130 at 548.692 kb on - strand, within HMPREF1058_RS06130 at 548.692 kb on - strand, within HMPREF1058_RS06130 at 548.692 kb on - strand, within HMPREF1058_RS06130 at 548.692 kb on - strand, within HMPREF1058_RS06130 at 548.692 kb on - strand, within HMPREF1058_RS06130 at 548.703 kb on - strand, within HMPREF1058_RS06130 at 548.706 kb on - strand, within HMPREF1058_RS06130 at 548.758 kb on + strand, within HMPREF1058_RS06130 at 548.763 kb on + strand, within HMPREF1058_RS06130 at 548.765 kb on + strand, within HMPREF1058_RS06130 at 548.766 kb on - strand, within HMPREF1058_RS06130 at 548.768 kb on - strand, within HMPREF1058_RS06130 at 548.784 kb on - strand, within HMPREF1058_RS06130 at 548.817 kb on - strand, within HMPREF1058_RS06130 at 548.817 kb on - strand, within HMPREF1058_RS06130 at 548.990 kb on + strand, within HMPREF1058_RS06130 at 548.990 kb on + strand, within HMPREF1058_RS06130 at 548.990 kb on + strand, within HMPREF1058_RS06130 at 549.109 kb on - strand, within HMPREF1058_RS06130 at 549.269 kb on + strand, within HMPREF1058_RS06130 at 549.276 kb on + strand, within HMPREF1058_RS06130 at 549.277 kb on - strand, within HMPREF1058_RS06130 at 549.455 kb on - strand at 549.455 kb on - strand at 549.461 kb on - strand at 549.541 kb on - strand at 549.613 kb on + strand at 549.657 kb on + strand at 549.691 kb on + strand at 549.773 kb on + strand at 549.783 kb on + strand at 549.887 kb on - strand at 549.937 kb on + strand at 549.938 kb on - strand at 549.938 kb on - strand at 549.958 kb on - strand at 549.958 kb on - strand at 550.006 kb on - strand at 550.095 kb on - strand at 550.126 kb on - strand at 550.148 kb on - strand at 550.189 kb on - strand at 550.287 kb on + strand at 550.287 kb on + strand at 550.288 kb on - strand at 550.317 kb on - strand at 550.317 kb on - strand at 550.317 kb on - strand at 550.317 kb on - strand at 550.359 kb on - strand, within HMPREF1058_RS06125 at 550.389 kb on + strand, within HMPREF1058_RS06125 at 550.416 kb on + strand, within HMPREF1058_RS06125 at 550.417 kb on - strand, within HMPREF1058_RS06125 at 550.421 kb on + strand, within HMPREF1058_RS06125 at 550.508 kb on + strand, within HMPREF1058_RS06125
Per-strain Table
Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C) remove 546,572 - +0.3 546,655 - HMPREF1058_RS06135 0.22 -0.4 546,668 - HMPREF1058_RS06135 0.24 +2.8 546,676 + HMPREF1058_RS06135 0.25 -0.3 546,680 - HMPREF1058_RS06135 0.26 -1.1 546,702 + HMPREF1058_RS06135 0.29 -0.2 546,704 + HMPREF1058_RS06135 0.29 -0.7 546,708 - HMPREF1058_RS06135 0.30 -0.1 546,709 + HMPREF1058_RS06135 0.30 +0.9 546,716 - HMPREF1058_RS06135 0.31 +1.1 546,723 - HMPREF1058_RS06135 0.32 -0.4 546,733 + HMPREF1058_RS06135 0.33 +0.1 546,746 + HMPREF1058_RS06135 0.35 -0.3 546,746 + HMPREF1058_RS06135 0.35 +0.3 546,749 - HMPREF1058_RS06135 0.36 +1.1 546,752 - HMPREF1058_RS06135 0.36 -0.0 546,752 - HMPREF1058_RS06135 0.36 -0.8 546,763 + HMPREF1058_RS06135 0.38 -0.3 546,764 - HMPREF1058_RS06135 0.38 +0.6 546,868 - HMPREF1058_RS06135 0.53 +1.3 546,875 + HMPREF1058_RS06135 0.54 -1.2 546,875 + HMPREF1058_RS06135 0.54 +0.5 546,875 + HMPREF1058_RS06135 0.54 +0.3 546,876 - HMPREF1058_RS06135 0.54 -1.2 546,876 - HMPREF1058_RS06135 0.54 +0.3 546,876 - HMPREF1058_RS06135 0.54 -0.0 546,876 - HMPREF1058_RS06135 0.54 +0.5 546,879 + HMPREF1058_RS06135 0.55 -0.2 546,879 + HMPREF1058_RS06135 0.55 +0.9 546,917 + HMPREF1058_RS06135 0.60 -0.3 546,917 + HMPREF1058_RS06135 0.60 -0.1 546,918 - HMPREF1058_RS06135 0.60 +0.3 546,924 + HMPREF1058_RS06135 0.61 -0.3 546,928 + HMPREF1058_RS06135 0.62 -0.3 547,047 + HMPREF1058_RS06135 0.79 +0.4 547,125 + -0.0 547,125 + -0.1 547,125 + -1.2 547,126 - -1.3 547,137 - +0.1 547,137 - +0.8 547,165 + +0.4 547,215 + -1.0 547,220 - +0.6 547,316 + -0.2 547,319 + -1.4 547,320 - +2.2 547,320 - -1.2 547,320 - -1.1 547,321 + -1.4 547,322 - +0.6 547,351 - -1.1 547,451 - +0.1 547,460 + +0.1 547,462 + +0.5 547,474 + +1.9 547,475 - -1.5 547,563 - -0.4 547,563 - +0.7 547,601 - +0.5 547,619 + -0.3 547,620 - -0.3 547,678 - +0.8 547,690 + HMPREF1058_RS06130 0.10 -0.5 547,694 + HMPREF1058_RS06130 0.11 +0.2 547,700 + HMPREF1058_RS06130 0.11 -0.1 547,704 - HMPREF1058_RS06130 0.11 +1.1 547,704 - HMPREF1058_RS06130 0.11 +0.1 547,802 + HMPREF1058_RS06130 0.16 -0.4 547,803 - HMPREF1058_RS06130 0.16 +1.8 547,803 - HMPREF1058_RS06130 0.16 +1.1 547,803 - HMPREF1058_RS06130 0.16 +0.1 547,803 - HMPREF1058_RS06130 0.16 -0.9 547,804 + HMPREF1058_RS06130 0.16 -0.4 547,804 + HMPREF1058_RS06130 0.16 -1.7 547,805 - HMPREF1058_RS06130 0.16 -1.5 547,969 + HMPREF1058_RS06130 0.24 +1.3 547,970 - HMPREF1058_RS06130 0.24 -0.0 547,970 - +0.2 547,998 - HMPREF1058_RS06130 0.25 -0.2 548,014 - HMPREF1058_RS06130 0.26 +1.1 548,039 - HMPREF1058_RS06130 0.27 +0.1 548,039 - HMPREF1058_RS06130 0.27 +0.1 548,083 + HMPREF1058_RS06130 0.30 -1.8 548,084 - HMPREF1058_RS06130 0.30 +1.1 548,094 - HMPREF1058_RS06130 0.30 -0.0 548,203 + HMPREF1058_RS06130 0.35 +0.2 548,209 + HMPREF1058_RS06130 0.36 +1.5 548,218 + HMPREF1058_RS06130 0.36 +0.0 548,219 - HMPREF1058_RS06130 0.36 -0.9 548,275 - HMPREF1058_RS06130 0.39 -1.3 548,341 + HMPREF1058_RS06130 0.42 -0.2 548,410 + HMPREF1058_RS06130 0.46 -1.4 548,411 - HMPREF1058_RS06130 0.46 -1.1 548,480 + HMPREF1058_RS06130 0.49 +0.9 548,539 - HMPREF1058_RS06130 0.52 +1.2 548,539 - HMPREF1058_RS06130 0.52 -0.8 548,540 + HMPREF1058_RS06130 0.52 +0.1 548,680 + HMPREF1058_RS06130 0.59 -0.8 548,681 - HMPREF1058_RS06130 0.59 -0.6 548,691 + HMPREF1058_RS06130 0.59 +1.3 548,691 + HMPREF1058_RS06130 0.59 +0.6 548,692 - HMPREF1058_RS06130 0.59 -0.7 548,692 - HMPREF1058_RS06130 0.59 -0.2 548,692 - HMPREF1058_RS06130 0.59 -0.4 548,692 - HMPREF1058_RS06130 0.59 -0.8 548,692 - HMPREF1058_RS06130 0.59 -1.1 548,703 - HMPREF1058_RS06130 0.60 -0.3 548,706 - HMPREF1058_RS06130 0.60 -0.8 548,758 + HMPREF1058_RS06130 0.63 -0.2 548,763 + HMPREF1058_RS06130 0.63 -0.1 548,765 + HMPREF1058_RS06130 0.63 -1.1 548,766 - HMPREF1058_RS06130 0.63 -0.2 548,768 - HMPREF1058_RS06130 0.63 +0.6 548,784 - HMPREF1058_RS06130 0.64 -1.0 548,817 - HMPREF1058_RS06130 0.66 -0.8 548,817 - HMPREF1058_RS06130 0.66 -0.3 548,990 + HMPREF1058_RS06130 0.74 -0.6 548,990 + HMPREF1058_RS06130 0.74 -0.6 548,990 + HMPREF1058_RS06130 0.74 -0.1 549,109 - HMPREF1058_RS06130 0.80 -0.7 549,269 + HMPREF1058_RS06130 0.88 -1.1 549,276 + HMPREF1058_RS06130 0.88 +0.5 549,277 - HMPREF1058_RS06130 0.88 +0.6 549,455 - +0.6 549,455 - -0.0 549,461 - -0.2 549,541 - -1.2 549,613 + +0.2 549,657 + -0.4 549,691 + -0.9 549,773 + +1.2 549,783 + +0.9 549,887 - +0.1 549,937 + -1.9 549,938 - +1.5 549,938 - +0.7 549,958 - +0.5 549,958 - -0.4 550,006 - -1.2 550,095 - -0.2 550,126 - -0.5 550,148 - +0.8 550,189 - -0.5 550,287 + +2.1 550,287 + +1.5 550,288 - -0.2 550,317 - -0.2 550,317 - -0.2 550,317 - -0.8 550,317 - +0.6 550,359 - HMPREF1058_RS06125 0.19 -0.6 550,389 + HMPREF1058_RS06125 0.26 +1.4 550,416 + HMPREF1058_RS06125 0.32 -0.4 550,417 - HMPREF1058_RS06125 0.32 -0.3 550,421 + HMPREF1058_RS06125 0.33 +0.1 550,508 + HMPREF1058_RS06125 0.54 -0.9
Or see this region's nucleotide sequence