Experiment: FSL 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02845 and HMPREF1058_RS02840 are separated by 114 nucleotides HMPREF1058_RS02840 and HMPREF1058_RS02835 are separated by 62 nucleotides
HMPREF1058_RS02845: HMPREF1058_RS02845 - arylsulfatase, at 74,511 to 76,109
_RS02845
HMPREF1058_RS02840: HMPREF1058_RS02840 - beta-galactosidase, at 76,224 to 78,902
_RS02840
HMPREF1058_RS02835: HMPREF1058_RS02835 - family 20 glycosylhydrolase, at 78,965 to 81,046
_RS02835
Position (kb) 76
77
78
79 Strain fitness (log2 ratio) -2
-1
0
1
2 at 75.389 kb on + strand, within HMPREF1058_RS02845 at 75.451 kb on + strand, within HMPREF1058_RS02845 at 75.460 kb on - strand, within HMPREF1058_RS02845 at 75.463 kb on + strand, within HMPREF1058_RS02845 at 75.464 kb on - strand, within HMPREF1058_RS02845 at 75.536 kb on - strand, within HMPREF1058_RS02845 at 75.538 kb on + strand, within HMPREF1058_RS02845 at 75.538 kb on + strand, within HMPREF1058_RS02845 at 75.538 kb on + strand, within HMPREF1058_RS02845 at 75.541 kb on + strand, within HMPREF1058_RS02845 at 75.576 kb on - strand, within HMPREF1058_RS02845 at 75.601 kb on + strand, within HMPREF1058_RS02845 at 75.691 kb on - strand at 75.695 kb on + strand at 75.719 kb on - strand, within HMPREF1058_RS02845 at 75.912 kb on + strand, within HMPREF1058_RS02845 at 75.912 kb on + strand, within HMPREF1058_RS02845 at 75.951 kb on + strand at 75.972 kb on + strand at 76.054 kb on - strand at 76.100 kb on + strand at 76.101 kb on - strand at 76.103 kb on - strand at 76.120 kb on + strand at 76.394 kb on - strand at 76.566 kb on - strand, within HMPREF1058_RS02840 at 76.599 kb on + strand, within HMPREF1058_RS02840 at 76.600 kb on - strand, within HMPREF1058_RS02840 at 76.618 kb on + strand, within HMPREF1058_RS02840 at 76.699 kb on - strand, within HMPREF1058_RS02840 at 76.728 kb on + strand, within HMPREF1058_RS02840 at 76.838 kb on + strand, within HMPREF1058_RS02840 at 76.838 kb on + strand, within HMPREF1058_RS02840 at 76.867 kb on + strand, within HMPREF1058_RS02840 at 76.868 kb on - strand, within HMPREF1058_RS02840 at 76.872 kb on - strand, within HMPREF1058_RS02840 at 76.883 kb on + strand, within HMPREF1058_RS02840 at 76.884 kb on - strand, within HMPREF1058_RS02840 at 76.927 kb on + strand, within HMPREF1058_RS02840 at 76.928 kb on - strand, within HMPREF1058_RS02840 at 76.928 kb on - strand, within HMPREF1058_RS02840 at 76.949 kb on + strand, within HMPREF1058_RS02840 at 76.952 kb on + strand, within HMPREF1058_RS02840 at 76.955 kb on - strand, within HMPREF1058_RS02840 at 76.955 kb on - strand, within HMPREF1058_RS02840 at 76.959 kb on - strand, within HMPREF1058_RS02840 at 76.985 kb on - strand, within HMPREF1058_RS02840 at 77.032 kb on + strand, within HMPREF1058_RS02840 at 77.033 kb on - strand, within HMPREF1058_RS02840 at 77.096 kb on + strand, within HMPREF1058_RS02840 at 77.098 kb on + strand, within HMPREF1058_RS02840 at 77.099 kb on - strand, within HMPREF1058_RS02840 at 77.099 kb on - strand, within HMPREF1058_RS02840 at 77.099 kb on - strand, within HMPREF1058_RS02840 at 77.099 kb on - strand, within HMPREF1058_RS02840 at 77.125 kb on - strand, within HMPREF1058_RS02840 at 77.350 kb on - strand, within HMPREF1058_RS02840 at 77.383 kb on - strand, within HMPREF1058_RS02840 at 77.388 kb on - strand, within HMPREF1058_RS02840 at 77.453 kb on - strand at 77.454 kb on + strand, within HMPREF1058_RS02840 at 77.455 kb on - strand, within HMPREF1058_RS02840 at 77.492 kb on - strand, within HMPREF1058_RS02840 at 77.592 kb on + strand, within HMPREF1058_RS02840 at 77.593 kb on - strand, within HMPREF1058_RS02840 at 77.697 kb on + strand, within HMPREF1058_RS02840 at 78.011 kb on + strand, within HMPREF1058_RS02840 at 78.012 kb on - strand, within HMPREF1058_RS02840 at 78.013 kb on + strand, within HMPREF1058_RS02840 at 78.061 kb on - strand, within HMPREF1058_RS02840 at 78.061 kb on - strand, within HMPREF1058_RS02840 at 78.159 kb on + strand, within HMPREF1058_RS02840 at 78.195 kb on + strand, within HMPREF1058_RS02840 at 78.196 kb on - strand, within HMPREF1058_RS02840 at 78.245 kb on - strand, within HMPREF1058_RS02840 at 78.319 kb on - strand, within HMPREF1058_RS02840 at 78.391 kb on + strand, within HMPREF1058_RS02840 at 78.420 kb on + strand, within HMPREF1058_RS02840 at 78.427 kb on - strand, within HMPREF1058_RS02840 at 78.427 kb on - strand, within HMPREF1058_RS02840 at 78.546 kb on - strand, within HMPREF1058_RS02840 at 78.546 kb on - strand, within HMPREF1058_RS02840 at 78.625 kb on + strand, within HMPREF1058_RS02840 at 78.635 kb on + strand at 78.657 kb on + strand at 78.662 kb on - strand at 78.662 kb on - strand at 78.773 kb on - strand at 78.775 kb on - strand at 78.775 kb on - strand at 78.803 kb on - strand at 78.902 kb on + strand at 78.915 kb on + strand at 78.916 kb on - strand at 78.921 kb on - strand at 79.042 kb on - strand at 79.107 kb on + strand at 79.232 kb on + strand, within HMPREF1058_RS02835 at 79.241 kb on - strand, within HMPREF1058_RS02835 at 79.318 kb on + strand, within HMPREF1058_RS02835 at 79.321 kb on - strand, within HMPREF1058_RS02835 at 79.420 kb on - strand, within HMPREF1058_RS02835 at 79.660 kb on - strand, within HMPREF1058_RS02835 at 79.760 kb on + strand, within HMPREF1058_RS02835 at 79.780 kb on + strand, within HMPREF1058_RS02835 at 79.873 kb on - strand, within HMPREF1058_RS02835 at 79.880 kb on + strand, within HMPREF1058_RS02835 at 79.880 kb on + strand, within HMPREF1058_RS02835
Per-strain Table
Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C) remove 75,389 + HMPREF1058_RS02845 0.55 +0.2 75,451 + HMPREF1058_RS02845 0.59 +0.6 75,460 - HMPREF1058_RS02845 0.59 -0.4 75,463 + HMPREF1058_RS02845 0.60 -0.6 75,464 - HMPREF1058_RS02845 0.60 +2.2 75,536 - HMPREF1058_RS02845 0.64 +0.6 75,538 + HMPREF1058_RS02845 0.64 -0.7 75,538 + HMPREF1058_RS02845 0.64 -0.2 75,538 + HMPREF1058_RS02845 0.64 -0.1 75,541 + HMPREF1058_RS02845 0.64 +0.1 75,576 - HMPREF1058_RS02845 0.67 -0.2 75,601 + HMPREF1058_RS02845 0.68 -1.9 75,691 - -1.2 75,695 + +1.3 75,719 - HMPREF1058_RS02845 0.76 +0.5 75,912 + HMPREF1058_RS02845 0.88 -0.6 75,912 + HMPREF1058_RS02845 0.88 -1.7 75,951 + +2.6 75,972 + +0.3 76,054 - -0.3 76,100 + -0.4 76,101 - +0.8 76,103 - +0.4 76,120 + +0.1 76,394 - +0.3 76,566 - HMPREF1058_RS02840 0.13 +0.4 76,599 + HMPREF1058_RS02840 0.14 +0.7 76,600 - HMPREF1058_RS02840 0.14 +0.5 76,618 + HMPREF1058_RS02840 0.15 -0.6 76,699 - HMPREF1058_RS02840 0.18 -0.7 76,728 + HMPREF1058_RS02840 0.19 +0.2 76,838 + HMPREF1058_RS02840 0.23 +0.3 76,838 + HMPREF1058_RS02840 0.23 +0.3 76,867 + HMPREF1058_RS02840 0.24 -0.0 76,868 - HMPREF1058_RS02840 0.24 +0.1 76,872 - HMPREF1058_RS02840 0.24 -0.7 76,883 + HMPREF1058_RS02840 0.25 -1.6 76,884 - HMPREF1058_RS02840 0.25 +1.0 76,927 + HMPREF1058_RS02840 0.26 -0.4 76,928 - HMPREF1058_RS02840 0.26 -0.6 76,928 - HMPREF1058_RS02840 0.26 -0.5 76,949 + HMPREF1058_RS02840 0.27 -0.0 76,952 + HMPREF1058_RS02840 0.27 -0.2 76,955 - HMPREF1058_RS02840 0.27 -0.1 76,955 - HMPREF1058_RS02840 0.27 +0.4 76,959 - HMPREF1058_RS02840 0.27 -0.1 76,985 - HMPREF1058_RS02840 0.28 +0.7 77,032 + HMPREF1058_RS02840 0.30 -0.8 77,033 - HMPREF1058_RS02840 0.30 -0.9 77,096 + HMPREF1058_RS02840 0.33 -0.4 77,098 + HMPREF1058_RS02840 0.33 +0.2 77,099 - HMPREF1058_RS02840 0.33 +0.1 77,099 - HMPREF1058_RS02840 0.33 +0.2 77,099 - HMPREF1058_RS02840 0.33 +0.3 77,099 - HMPREF1058_RS02840 0.33 -2.6 77,125 - HMPREF1058_RS02840 0.34 -0.2 77,350 - HMPREF1058_RS02840 0.42 +1.0 77,383 - HMPREF1058_RS02840 0.43 -1.2 77,388 - HMPREF1058_RS02840 0.43 -0.0 77,453 - +1.2 77,454 + HMPREF1058_RS02840 0.46 -0.5 77,455 - HMPREF1058_RS02840 0.46 -1.4 77,492 - HMPREF1058_RS02840 0.47 +0.0 77,592 + HMPREF1058_RS02840 0.51 +0.2 77,593 - HMPREF1058_RS02840 0.51 +0.1 77,697 + HMPREF1058_RS02840 0.55 -0.3 78,011 + HMPREF1058_RS02840 0.67 +0.1 78,012 - HMPREF1058_RS02840 0.67 -0.6 78,013 + HMPREF1058_RS02840 0.67 -0.6 78,061 - HMPREF1058_RS02840 0.69 -0.3 78,061 - HMPREF1058_RS02840 0.69 +0.8 78,159 + HMPREF1058_RS02840 0.72 +0.3 78,195 + HMPREF1058_RS02840 0.74 +0.4 78,196 - HMPREF1058_RS02840 0.74 +0.9 78,245 - HMPREF1058_RS02840 0.75 -0.9 78,319 - HMPREF1058_RS02840 0.78 -0.3 78,391 + HMPREF1058_RS02840 0.81 -1.2 78,420 + HMPREF1058_RS02840 0.82 -0.0 78,427 - HMPREF1058_RS02840 0.82 +1.7 78,427 - HMPREF1058_RS02840 0.82 -1.7 78,546 - HMPREF1058_RS02840 0.87 -0.3 78,546 - HMPREF1058_RS02840 0.87 -0.2 78,625 + HMPREF1058_RS02840 0.90 +0.2 78,635 + +0.5 78,657 + -0.3 78,662 - -0.2 78,662 - -0.3 78,773 - +0.4 78,775 - -1.1 78,775 - -0.7 78,803 - -0.6 78,902 + -1.0 78,915 + +0.6 78,916 - -0.4 78,921 - -0.1 79,042 - -0.5 79,107 + +0.4 79,232 + HMPREF1058_RS02835 0.13 +0.3 79,241 - HMPREF1058_RS02835 0.13 -0.3 79,318 + HMPREF1058_RS02835 0.17 -0.2 79,321 - HMPREF1058_RS02835 0.17 -0.3 79,420 - HMPREF1058_RS02835 0.22 +2.2 79,660 - HMPREF1058_RS02835 0.33 -1.1 79,760 + HMPREF1058_RS02835 0.38 -0.1 79,780 + HMPREF1058_RS02835 0.39 +0.9 79,873 - HMPREF1058_RS02835 0.44 -0.2 79,880 + HMPREF1058_RS02835 0.44 +0.1 79,880 + HMPREF1058_RS02835 0.44 +0.0
Or see this region's nucleotide sequence