Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS00100

Experiment: FSL 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS00105 and HMPREF1058_RS00100 are separated by 18 nucleotidesHMPREF1058_RS00100 and HMPREF1058_RS00095 are separated by 211 nucleotides HMPREF1058_RS00105: HMPREF1058_RS00105 - rhamnogalacturonan acetylesterase, at 57,869 to 59,143 _RS00105 HMPREF1058_RS00100: HMPREF1058_RS00100 - beta-glucuronidase, at 59,162 to 62,029 _RS00100 HMPREF1058_RS00095: HMPREF1058_RS00095 - family 43 glycosylhydrolase, at 62,241 to 64,595 _RS00095 Position (kb) 59 60 61 62 63Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 58.358 kb on - strand, within HMPREF1058_RS00105at 58.368 kb on + strand, within HMPREF1058_RS00105at 58.368 kb on + strand, within HMPREF1058_RS00105at 58.369 kb on - strand, within HMPREF1058_RS00105at 58.513 kb on - strand, within HMPREF1058_RS00105at 58.592 kb on + strand, within HMPREF1058_RS00105at 58.633 kb on + strand, within HMPREF1058_RS00105at 58.634 kb on - strand, within HMPREF1058_RS00105at 58.634 kb on - strand, within HMPREF1058_RS00105at 58.693 kb on + strand, within HMPREF1058_RS00105at 58.762 kb on + strand, within HMPREF1058_RS00105at 58.792 kb on + strand, within HMPREF1058_RS00105at 59.010 kb on + strand, within HMPREF1058_RS00105at 59.035 kb on + strandat 59.066 kb on - strandat 59.161 kb on - strandat 59.213 kb on + strandat 59.213 kb on + strandat 59.315 kb on - strandat 59.393 kb on + strandat 59.413 kb on + strandat 59.542 kb on - strand, within HMPREF1058_RS00100at 59.585 kb on + strand, within HMPREF1058_RS00100at 59.585 kb on + strand, within HMPREF1058_RS00100at 59.586 kb on - strand, within HMPREF1058_RS00100at 59.673 kb on + strand, within HMPREF1058_RS00100at 59.698 kb on + strand, within HMPREF1058_RS00100at 59.762 kb on + strand, within HMPREF1058_RS00100at 59.843 kb on + strand, within HMPREF1058_RS00100at 59.844 kb on - strand, within HMPREF1058_RS00100at 59.912 kb on + strand, within HMPREF1058_RS00100at 59.958 kb on + strand, within HMPREF1058_RS00100at 59.960 kb on + strand, within HMPREF1058_RS00100at 59.961 kb on - strand, within HMPREF1058_RS00100at 59.981 kb on + strand, within HMPREF1058_RS00100at 59.987 kb on - strand, within HMPREF1058_RS00100at 59.987 kb on - strand, within HMPREF1058_RS00100at 59.987 kb on - strand, within HMPREF1058_RS00100at 59.989 kb on - strand, within HMPREF1058_RS00100at 60.068 kb on - strand, within HMPREF1058_RS00100at 60.068 kb on - strand, within HMPREF1058_RS00100at 60.103 kb on + strand, within HMPREF1058_RS00100at 60.139 kb on + strand, within HMPREF1058_RS00100at 60.271 kb on + strand, within HMPREF1058_RS00100at 60.271 kb on + strand, within HMPREF1058_RS00100at 60.401 kb on + strand, within HMPREF1058_RS00100at 60.449 kb on + strand, within HMPREF1058_RS00100at 60.453 kb on + strand, within HMPREF1058_RS00100at 60.453 kb on + strand, within HMPREF1058_RS00100at 60.454 kb on - strand, within HMPREF1058_RS00100at 60.551 kb on + strand, within HMPREF1058_RS00100at 60.551 kb on + strand, within HMPREF1058_RS00100at 60.609 kb on + strand, within HMPREF1058_RS00100at 60.611 kb on + strand, within HMPREF1058_RS00100at 60.611 kb on + strand, within HMPREF1058_RS00100at 60.611 kb on + strand, within HMPREF1058_RS00100at 60.612 kb on - strand, within HMPREF1058_RS00100at 60.612 kb on - strand, within HMPREF1058_RS00100at 60.612 kb on - strand, within HMPREF1058_RS00100at 60.708 kb on + strand, within HMPREF1058_RS00100at 60.717 kb on + strand, within HMPREF1058_RS00100at 60.726 kb on + strand, within HMPREF1058_RS00100at 60.762 kb on + strand, within HMPREF1058_RS00100at 60.763 kb on - strand, within HMPREF1058_RS00100at 60.772 kb on + strand, within HMPREF1058_RS00100at 60.859 kb on + strand, within HMPREF1058_RS00100at 60.859 kb on + strand, within HMPREF1058_RS00100at 60.925 kb on + strand, within HMPREF1058_RS00100at 60.925 kb on + strand, within HMPREF1058_RS00100at 60.950 kb on + strand, within HMPREF1058_RS00100at 60.951 kb on - strand, within HMPREF1058_RS00100at 61.162 kb on + strand, within HMPREF1058_RS00100at 61.163 kb on - strand, within HMPREF1058_RS00100at 61.182 kb on - strand, within HMPREF1058_RS00100at 61.230 kb on - strand, within HMPREF1058_RS00100at 61.242 kb on - strand, within HMPREF1058_RS00100at 61.352 kb on + strand, within HMPREF1058_RS00100at 61.504 kb on + strand, within HMPREF1058_RS00100at 61.537 kb on + strand, within HMPREF1058_RS00100at 61.537 kb on + strand, within HMPREF1058_RS00100at 61.538 kb on - strand, within HMPREF1058_RS00100at 61.538 kb on - strand, within HMPREF1058_RS00100at 61.542 kb on + strand, within HMPREF1058_RS00100at 61.610 kb on + strand, within HMPREF1058_RS00100at 61.639 kb on + strand, within HMPREF1058_RS00100at 61.639 kb on + strand, within HMPREF1058_RS00100at 61.640 kb on - strandat 61.640 kb on - strand, within HMPREF1058_RS00100at 61.701 kb on + strand, within HMPREF1058_RS00100at 61.701 kb on + strand, within HMPREF1058_RS00100at 61.702 kb on - strand, within HMPREF1058_RS00100at 61.776 kb on + strandat 61.783 kb on - strandat 62.000 kb on + strandat 62.033 kb on - strandat 62.105 kb on - strandat 62.145 kb on + strandat 62.145 kb on + strandat 62.146 kb on - strandat 62.146 kb on - strandat 62.146 kb on - strandat 62.167 kb on + strandat 62.176 kb on + strandat 62.214 kb on + strandat 62.215 kb on - strandat 62.227 kb on - strandat 62.227 kb on - strandat 62.237 kb on - strandat 62.237 kb on - strandat 62.522 kb on + strand, within HMPREF1058_RS00095at 62.524 kb on + strand, within HMPREF1058_RS00095at 62.525 kb on - strand, within HMPREF1058_RS00095at 62.525 kb on - strand, within HMPREF1058_RS00095at 62.606 kb on + strand, within HMPREF1058_RS00095at 62.739 kb on + strand, within HMPREF1058_RS00095at 62.740 kb on - strand, within HMPREF1058_RS00095at 62.740 kb on - strand, within HMPREF1058_RS00095at 62.828 kb on - strand, within HMPREF1058_RS00095at 62.942 kb on + strand, within HMPREF1058_RS00095

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Per-strain Table

Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C)
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58,358 - HMPREF1058_RS00105 0.38 +1.4
58,368 + HMPREF1058_RS00105 0.39 -0.9
58,368 + HMPREF1058_RS00105 0.39 -0.4
58,369 - HMPREF1058_RS00105 0.39 -0.0
58,513 - HMPREF1058_RS00105 0.51 -1.0
58,592 + HMPREF1058_RS00105 0.57 +0.1
58,633 + HMPREF1058_RS00105 0.60 -1.0
58,634 - HMPREF1058_RS00105 0.60 -0.2
58,634 - HMPREF1058_RS00105 0.60 -1.6
58,693 + HMPREF1058_RS00105 0.65 +0.6
58,762 + HMPREF1058_RS00105 0.70 +1.8
58,792 + HMPREF1058_RS00105 0.72 +0.1
59,010 + HMPREF1058_RS00105 0.89 +0.5
59,035 + -0.2
59,066 - -0.8
59,161 - +0.3
59,213 + +0.3
59,213 + -0.9
59,315 - -0.3
59,393 + -0.2
59,413 + +0.1
59,542 - HMPREF1058_RS00100 0.13 -0.9
59,585 + HMPREF1058_RS00100 0.15 -0.1
59,585 + HMPREF1058_RS00100 0.15 -0.4
59,586 - HMPREF1058_RS00100 0.15 -0.6
59,673 + HMPREF1058_RS00100 0.18 -1.4
59,698 + HMPREF1058_RS00100 0.19 -0.2
59,762 + HMPREF1058_RS00100 0.21 +0.1
59,843 + HMPREF1058_RS00100 0.24 +0.9
59,844 - HMPREF1058_RS00100 0.24 +0.2
59,912 + HMPREF1058_RS00100 0.26 +0.5
59,958 + HMPREF1058_RS00100 0.28 -1.0
59,960 + HMPREF1058_RS00100 0.28 -0.2
59,961 - HMPREF1058_RS00100 0.28 +0.1
59,981 + HMPREF1058_RS00100 0.29 +0.4
59,987 - HMPREF1058_RS00100 0.29 -1.4
59,987 - HMPREF1058_RS00100 0.29 -1.3
59,987 - HMPREF1058_RS00100 0.29 -0.4
59,989 - HMPREF1058_RS00100 0.29 -1.4
60,068 - HMPREF1058_RS00100 0.32 -0.7
60,068 - HMPREF1058_RS00100 0.32 +0.7
60,103 + HMPREF1058_RS00100 0.33 +0.2
60,139 + HMPREF1058_RS00100 0.34 +0.8
60,271 + HMPREF1058_RS00100 0.39 -0.3
60,271 + HMPREF1058_RS00100 0.39 +0.4
60,401 + HMPREF1058_RS00100 0.43 -1.5
60,449 + HMPREF1058_RS00100 0.45 +0.2
60,453 + HMPREF1058_RS00100 0.45 -0.2
60,453 + HMPREF1058_RS00100 0.45 -1.5
60,454 - HMPREF1058_RS00100 0.45 +0.1
60,551 + HMPREF1058_RS00100 0.48 -0.3
60,551 + HMPREF1058_RS00100 0.48 -0.2
60,609 + HMPREF1058_RS00100 0.50 -0.9
60,611 + HMPREF1058_RS00100 0.51 -0.3
60,611 + HMPREF1058_RS00100 0.51 +0.3
60,611 + HMPREF1058_RS00100 0.51 +1.2
60,612 - HMPREF1058_RS00100 0.51 +0.2
60,612 - HMPREF1058_RS00100 0.51 +0.1
60,612 - HMPREF1058_RS00100 0.51 -0.0
60,708 + HMPREF1058_RS00100 0.54 -0.1
60,717 + HMPREF1058_RS00100 0.54 -0.0
60,726 + HMPREF1058_RS00100 0.55 -0.4
60,762 + HMPREF1058_RS00100 0.56 +0.3
60,763 - HMPREF1058_RS00100 0.56 -0.1
60,772 + HMPREF1058_RS00100 0.56 -0.8
60,859 + HMPREF1058_RS00100 0.59 -0.2
60,859 + HMPREF1058_RS00100 0.59 +1.1
60,925 + HMPREF1058_RS00100 0.61 +0.3
60,925 + HMPREF1058_RS00100 0.61 +0.2
60,950 + HMPREF1058_RS00100 0.62 -0.3
60,951 - HMPREF1058_RS00100 0.62 +0.4
61,162 + HMPREF1058_RS00100 0.70 +0.4
61,163 - HMPREF1058_RS00100 0.70 -0.8
61,182 - HMPREF1058_RS00100 0.70 -0.7
61,230 - HMPREF1058_RS00100 0.72 +0.3
61,242 - HMPREF1058_RS00100 0.73 -0.7
61,352 + HMPREF1058_RS00100 0.76 -0.3
61,504 + HMPREF1058_RS00100 0.82 +0.4
61,537 + HMPREF1058_RS00100 0.83 +0.2
61,537 + HMPREF1058_RS00100 0.83 -0.4
61,538 - HMPREF1058_RS00100 0.83 -0.0
61,538 - HMPREF1058_RS00100 0.83 -1.1
61,542 + HMPREF1058_RS00100 0.83 -1.5
61,610 + HMPREF1058_RS00100 0.85 -1.6
61,639 + HMPREF1058_RS00100 0.86 -0.6
61,639 + HMPREF1058_RS00100 0.86 +0.1
61,640 - -0.4
61,640 - HMPREF1058_RS00100 0.86 -0.0
61,701 + HMPREF1058_RS00100 0.89 -0.0
61,701 + HMPREF1058_RS00100 0.89 -0.2
61,702 - HMPREF1058_RS00100 0.89 -0.1
61,776 + -0.1
61,783 - -1.8
62,000 + +0.4
62,033 - -0.1
62,105 - +0.5
62,145 + -0.0
62,145 + -1.2
62,146 - +0.2
62,146 - -0.9
62,146 - +0.8
62,167 + -1.2
62,176 + +1.5
62,214 + -0.2
62,215 - -1.3
62,227 - -0.4
62,227 - -1.0
62,237 - -2.3
62,237 - -0.3
62,522 + HMPREF1058_RS00095 0.12 -1.5
62,524 + HMPREF1058_RS00095 0.12 +0.5
62,525 - HMPREF1058_RS00095 0.12 -2.2
62,525 - HMPREF1058_RS00095 0.12 -0.0
62,606 + HMPREF1058_RS00095 0.15 -0.2
62,739 + HMPREF1058_RS00095 0.21 -1.0
62,740 - HMPREF1058_RS00095 0.21 -2.0
62,740 - HMPREF1058_RS00095 0.21 -1.6
62,828 - HMPREF1058_RS00095 0.25 -1.0
62,942 + HMPREF1058_RS00095 0.30 -2.9

Or see this region's nucleotide sequence