Experiment: tomato xylem local (total stem)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS02220 and RALBFv3_RS02225 are separated by 46 nucleotides RALBFv3_RS02225 and RALBFv3_RS23620 are separated by 48 nucleotides RALBFv3_RS23620 and RALBFv3_RS02230 are separated by 169 nucleotides RALBFv3_RS02230 and RALBFv3_RS02235 are separated by 60 nucleotides RALBFv3_RS02235 and RALBFv3_RS02240 are separated by 30 nucleotides
RALBFv3_RS02220: RALBFv3_RS02220 - SAM-dependent methyltransferase, at 497,795 to 498,571
_RS02220
RALBFv3_RS02225: RALBFv3_RS02225 - ribonuclease HI, at 498,618 to 499,073
_RS02225
RALBFv3_RS23620: RALBFv3_RS23620 - hypothetical protein, at 499,122 to 499,304
_RS23620
RALBFv3_RS02230: RALBFv3_RS02230 - DUF1488 domain-containing protein, at 499,474 to 499,752
_RS02230
RALBFv3_RS02235: RALBFv3_RS02235 - conjugal transfer protein TraR, at 499,813 to 500,175
_RS02235
RALBFv3_RS02240: RALBFv3_RS02240 - hypothetical protein, at 500,206 to 500,412
_RS02240
Position (kb) 499
500 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 498.306 kb on - strand, within RALBFv3_RS02220 at 498.398 kb on + strand, within RALBFv3_RS02220 at 498.398 kb on + strand, within RALBFv3_RS02220 at 499.090 kb on - strand at 499.384 kb on + strand at 499.385 kb on - strand at 499.425 kb on + strand at 499.426 kb on - strand at 499.511 kb on - strand, within RALBFv3_RS02230 at 499.570 kb on + strand, within RALBFv3_RS02230 at 499.750 kb on + strand at 499.977 kb on - strand, within RALBFv3_RS02235 at 500.189 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction tomato xylem local (total stem) remove 498,306 - RALBFv3_RS02220 0.66 +1.9 498,398 + RALBFv3_RS02220 0.78 -2.2 498,398 + RALBFv3_RS02220 0.78 -1.5 499,090 - -0.3 499,384 + -0.1 499,385 - -0.4 499,425 + +1.2 499,426 - -1.9 499,511 - RALBFv3_RS02230 0.13 -0.4 499,570 + RALBFv3_RS02230 0.34 -3.0 499,750 + +2.9 499,977 - RALBFv3_RS02235 0.45 -0.8 500,189 - -0.1
Or see this region's nucleotide sequence