Experiment: tomato xylem local (total stem)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS24285 and RALBFv3_RS17725 overlap by 16 nucleotides RALBFv3_RS17725 and RALBFv3_RS17730 are separated by 131 nucleotides RALBFv3_RS17730 and RALBFv3_RS17735 are separated by 221 nucleotides RALBFv3_RS17735 and RALBFv3_RS17740 are separated by 109 nucleotides
RALBFv3_RS24285: RALBFv3_RS24285 - hypothetical protein, at 479,303 to 479,791
_RS24285
RALBFv3_RS17725: RALBFv3_RS17725 - sulfite exporter TauE/SafE family protein, at 479,776 to 480,534
_RS17725
RALBFv3_RS17730: RALBFv3_RS17730 - LysR family transcriptional regulator, at 480,666 to 481,550
_RS17730
RALBFv3_RS17735: RALBFv3_RS17735 - hypothetical protein, at 481,772 to 482,281
_RS17735
RALBFv3_RS17740: RALBFv3_RS17740 - AMP-dependent synthetase, at 482,391 to 484,079
_RS17740
Position (kb) 480
481
482 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 479.891 kb on + strand, within RALBFv3_RS17725 at 480.099 kb on - strand, within RALBFv3_RS17725 at 480.099 kb on - strand, within RALBFv3_RS17725 at 480.189 kb on + strand, within RALBFv3_RS17725 at 480.190 kb on - strand, within RALBFv3_RS17725 at 480.190 kb on - strand, within RALBFv3_RS17725 at 480.351 kb on - strand, within RALBFv3_RS17725 at 480.597 kb on + strand at 480.597 kb on + strand at 480.598 kb on - strand at 480.598 kb on - strand at 480.925 kb on - strand, within RALBFv3_RS17730 at 481.059 kb on + strand, within RALBFv3_RS17730 at 481.059 kb on + strand, within RALBFv3_RS17730 at 481.059 kb on + strand, within RALBFv3_RS17730 at 481.060 kb on - strand, within RALBFv3_RS17730 at 481.060 kb on - strand, within RALBFv3_RS17730 at 481.060 kb on - strand, within RALBFv3_RS17730 at 481.278 kb on + strand, within RALBFv3_RS17730 at 481.278 kb on + strand, within RALBFv3_RS17730 at 481.278 kb on + strand, within RALBFv3_RS17730 at 481.279 kb on - strand, within RALBFv3_RS17730 at 481.321 kb on - strand, within RALBFv3_RS17730 at 481.513 kb on - strand at 481.630 kb on - strand at 481.771 kb on + strand at 481.772 kb on - strand at 481.964 kb on + strand, within RALBFv3_RS17735 at 481.965 kb on - strand, within RALBFv3_RS17735 at 481.979 kb on + strand, within RALBFv3_RS17735 at 481.980 kb on - strand, within RALBFv3_RS17735 at 481.980 kb on - strand, within RALBFv3_RS17735 at 482.451 kb on + strand at 482.452 kb on - strand at 482.514 kb on + strand at 482.515 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction tomato xylem local (total stem) remove 479,891 + RALBFv3_RS17725 0.15 -0.1 480,099 - RALBFv3_RS17725 0.43 -2.3 480,099 - RALBFv3_RS17725 0.43 -2.8 480,189 + RALBFv3_RS17725 0.54 +1.3 480,190 - RALBFv3_RS17725 0.55 +0.5 480,190 - RALBFv3_RS17725 0.55 -0.3 480,351 - RALBFv3_RS17725 0.76 -0.9 480,597 + -1.2 480,597 + +1.0 480,598 - +0.7 480,598 - +1.7 480,925 - RALBFv3_RS17730 0.29 -1.0 481,059 + RALBFv3_RS17730 0.44 +0.0 481,059 + RALBFv3_RS17730 0.44 -0.2 481,059 + RALBFv3_RS17730 0.44 +1.5 481,060 - RALBFv3_RS17730 0.45 +0.2 481,060 - RALBFv3_RS17730 0.45 -0.2 481,060 - RALBFv3_RS17730 0.45 +0.6 481,278 + RALBFv3_RS17730 0.69 +0.1 481,278 + RALBFv3_RS17730 0.69 +0.0 481,278 + RALBFv3_RS17730 0.69 -0.7 481,279 - RALBFv3_RS17730 0.69 +0.5 481,321 - RALBFv3_RS17730 0.74 -0.4 481,513 - -0.9 481,630 - -0.8 481,771 + -1.5 481,772 - -0.8 481,964 + RALBFv3_RS17735 0.38 -0.1 481,965 - RALBFv3_RS17735 0.38 -0.7 481,979 + RALBFv3_RS17735 0.41 +2.1 481,980 - RALBFv3_RS17735 0.41 +1.7 481,980 - RALBFv3_RS17735 0.41 +0.4 482,451 + +1.4 482,452 - -0.5 482,514 + -1.5 482,515 - -2.4
Or see this region's nucleotide sequence