Experiment: tomato xylem local (total stem)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17560 and RALBFv3_RS17565 are separated by 12 nucleotides RALBFv3_RS17565 and RALBFv3_RS17570 are separated by 216 nucleotides RALBFv3_RS17570 and RALBFv3_RS17575 are separated by 146 nucleotides
RALBFv3_RS17560: RALBFv3_RS17560 - type III effector protein skwp2, at 435,068 to 442,627
_RS17560
RALBFv3_RS17565: RALBFv3_RS17565 - hypothetical protein, at 442,640 to 443,515
_RS17565
RALBFv3_RS17570: RALBFv3_RS17570 - DUF1304 domain-containing protein, at 443,732 to 444,094
_RS17570
RALBFv3_RS17575: RALBFv3_RS17575 - dienelactone hydrolase family protein, at 444,241 to 444,936
_RS17575
Position (kb) 442
443
444 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 442.219 kb on + strand at 442.219 kb on + strand at 442.220 kb on - strand at 442.618 kb on + strand at 442.619 kb on - strand at 442.619 kb on - strand at 442.998 kb on + strand, within RALBFv3_RS17565 at 442.998 kb on + strand, within RALBFv3_RS17565 at 442.999 kb on - strand, within RALBFv3_RS17565 at 442.999 kb on - strand, within RALBFv3_RS17565 at 443.001 kb on + strand, within RALBFv3_RS17565 at 443.002 kb on - strand, within RALBFv3_RS17565 at 443.057 kb on - strand, within RALBFv3_RS17565 at 443.118 kb on - strand, within RALBFv3_RS17565 at 443.403 kb on - strand, within RALBFv3_RS17565 at 443.403 kb on - strand, within RALBFv3_RS17565 at 443.421 kb on - strand, within RALBFv3_RS17565 at 443.421 kb on - strand, within RALBFv3_RS17565 at 443.929 kb on - strand, within RALBFv3_RS17570 at 443.929 kb on - strand, within RALBFv3_RS17570 at 444.039 kb on + strand, within RALBFv3_RS17570 at 444.039 kb on + strand, within RALBFv3_RS17570 at 444.039 kb on + strand, within RALBFv3_RS17570 at 444.040 kb on - strand, within RALBFv3_RS17570 at 444.127 kb on + strand at 444.127 kb on + strand at 444.187 kb on - strand at 444.283 kb on + strand at 444.283 kb on + strand at 444.284 kb on - strand at 444.284 kb on - strand at 444.284 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction tomato xylem local (total stem) remove 442,219 + -0.8 442,219 + +1.0 442,220 - +0.5 442,618 + -0.3 442,619 - -0.8 442,619 - -0.6 442,998 + RALBFv3_RS17565 0.41 -0.6 442,998 + RALBFv3_RS17565 0.41 -1.2 442,999 - RALBFv3_RS17565 0.41 +1.7 442,999 - RALBFv3_RS17565 0.41 +1.4 443,001 + RALBFv3_RS17565 0.41 +0.4 443,002 - RALBFv3_RS17565 0.41 -0.1 443,057 - RALBFv3_RS17565 0.48 +1.6 443,118 - RALBFv3_RS17565 0.55 -2.5 443,403 - RALBFv3_RS17565 0.87 -0.1 443,403 - RALBFv3_RS17565 0.87 -3.6 443,421 - RALBFv3_RS17565 0.89 +0.2 443,421 - RALBFv3_RS17565 0.89 -0.2 443,929 - RALBFv3_RS17570 0.54 +0.4 443,929 - RALBFv3_RS17570 0.54 -0.2 444,039 + RALBFv3_RS17570 0.85 -0.9 444,039 + RALBFv3_RS17570 0.85 +1.2 444,039 + RALBFv3_RS17570 0.85 +0.5 444,040 - RALBFv3_RS17570 0.85 -1.0 444,127 + -1.2 444,127 + +0.2 444,187 - -0.6 444,283 + -1.4 444,283 + -1.1 444,284 - +0.1 444,284 - -3.1 444,284 - +0.2
Or see this region's nucleotide sequence