Experiment: tomato xylem local (total stem)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS01820 and RALBFv3_RS01825 are separated by 13 nucleotides RALBFv3_RS01825 and RALBFv3_RS01830 are separated by 14 nucleotides RALBFv3_RS01830 and RALBFv3_RS01835 are separated by 155 nucleotides RALBFv3_RS01835 and RALBFv3_RS01840 are separated by 38 nucleotides
RALBFv3_RS01820: RALBFv3_RS01820 - 3-hydroxybutyrate dehydrogenase, at 406,668 to 407,447
_RS01820
RALBFv3_RS01825: RALBFv3_RS01825 - CoA transferase subunit B, at 407,461 to 408,099
_RS01825
RALBFv3_RS01830: RALBFv3_RS01830 - CoA transferase subunit A, at 408,114 to 408,812
_RS01830
RALBFv3_RS01835: RALBFv3_RS01835 - LuxR family transcriptional regulator, at 408,968 to 409,513
_RS01835
RALBFv3_RS01840: RALBFv3_RS01840 - NAD(P)-dependent oxidoreductase, at 409,552 to 410,337
_RS01840
Position (kb) 408
409 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 407.167 kb on + strand, within RALBFv3_RS01820 at 407.167 kb on + strand, within RALBFv3_RS01820 at 407.167 kb on + strand, within RALBFv3_RS01820 at 407.167 kb on + strand, within RALBFv3_RS01820 at 407.261 kb on + strand, within RALBFv3_RS01820 at 408.038 kb on + strand at 408.039 kb on - strand at 408.039 kb on - strand at 408.039 kb on - strand at 408.310 kb on + strand, within RALBFv3_RS01830 at 408.388 kb on + strand, within RALBFv3_RS01830 at 408.389 kb on - strand, within RALBFv3_RS01830 at 408.389 kb on - strand, within RALBFv3_RS01830 at 408.411 kb on + strand, within RALBFv3_RS01830 at 408.411 kb on + strand, within RALBFv3_RS01830 at 408.547 kb on + strand, within RALBFv3_RS01830 at 408.548 kb on - strand, within RALBFv3_RS01830 at 408.580 kb on + strand, within RALBFv3_RS01830 at 408.581 kb on - strand, within RALBFv3_RS01830 at 408.656 kb on + strand, within RALBFv3_RS01830 at 408.800 kb on - strand at 408.953 kb on + strand at 408.957 kb on + strand at 408.957 kb on + strand at 408.957 kb on + strand at 408.963 kb on + strand at 408.963 kb on + strand at 408.964 kb on - strand at 408.964 kb on - strand at 408.964 kb on - strand at 408.967 kb on + strand at 408.967 kb on + strand at 408.968 kb on - strand at 409.122 kb on - strand, within RALBFv3_RS01835 at 409.140 kb on - strand, within RALBFv3_RS01835 at 409.440 kb on - strand, within RALBFv3_RS01835 at 409.765 kb on - strand, within RALBFv3_RS01840 at 409.765 kb on - strand, within RALBFv3_RS01840
Per-strain Table
Position Strand Gene LocusTag Fraction tomato xylem local (total stem) remove 407,167 + RALBFv3_RS01820 0.64 -1.7 407,167 + RALBFv3_RS01820 0.64 +1.4 407,167 + RALBFv3_RS01820 0.64 -1.0 407,167 + RALBFv3_RS01820 0.64 +0.7 407,261 + RALBFv3_RS01820 0.76 +1.5 408,038 + +1.6 408,039 - +0.3 408,039 - +0.3 408,039 - -0.3 408,310 + RALBFv3_RS01830 0.28 +0.4 408,388 + RALBFv3_RS01830 0.39 +0.4 408,389 - RALBFv3_RS01830 0.39 -0.9 408,389 - RALBFv3_RS01830 0.39 +1.5 408,411 + RALBFv3_RS01830 0.42 -2.1 408,411 + RALBFv3_RS01830 0.42 +0.1 408,547 + RALBFv3_RS01830 0.62 -0.1 408,548 - RALBFv3_RS01830 0.62 -0.2 408,580 + RALBFv3_RS01830 0.67 -0.1 408,581 - RALBFv3_RS01830 0.67 -0.4 408,656 + RALBFv3_RS01830 0.78 +0.3 408,800 - -0.5 408,953 + -2.3 408,957 + +0.4 408,957 + -1.0 408,957 + -0.4 408,963 + +0.9 408,963 + -0.4 408,964 - -0.3 408,964 - -1.5 408,964 - +0.2 408,967 + +3.6 408,967 + -0.5 408,968 - +0.7 409,122 - RALBFv3_RS01835 0.28 -1.0 409,140 - RALBFv3_RS01835 0.32 +0.6 409,440 - RALBFv3_RS01835 0.86 -0.5 409,765 - RALBFv3_RS01840 0.27 +1.5 409,765 - RALBFv3_RS01840 0.27 +2.7
Or see this region's nucleotide sequence