Experiment: tomato xylem local (total stem)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS01545 and RALBFv3_RS01550 are separated by 191 nucleotides RALBFv3_RS01550 and RALBFv3_RS01555 are separated by 207 nucleotides RALBFv3_RS01555 and RALBFv3_RS01560 are separated by 178 nucleotides
RALBFv3_RS01545: RALBFv3_RS01545 - RNA-binding transcriptional accessory protein, at 347,551 to 349,893
_RS01545
RALBFv3_RS01550: RALBFv3_RS01550 - hypothetical protein, at 350,085 to 350,588
_RS01550
RALBFv3_RS01555: RALBFv3_RS01555 - hypothetical protein, at 350,796 to 352,070
_RS01555
RALBFv3_RS01560: RALBFv3_RS01560 - potassium transporter Kup, at 352,249 to 354,150
_RS01560
Position (kb) 350
351
352
353 Strain fitness (log2 ratio) -2
-1
0
1
2 at 349.971 kb on - strand at 350.487 kb on - strand, within RALBFv3_RS01550 at 350.512 kb on + strand, within RALBFv3_RS01550 at 350.586 kb on + strand at 350.587 kb on - strand at 351.038 kb on - strand, within RALBFv3_RS01555 at 351.505 kb on + strand, within RALBFv3_RS01555 at 351.700 kb on + strand, within RALBFv3_RS01555 at 351.701 kb on - strand, within RALBFv3_RS01555 at 351.712 kb on + strand, within RALBFv3_RS01555 at 352.060 kb on + strand at 352.476 kb on - strand, within RALBFv3_RS01560 at 352.476 kb on - strand, within RALBFv3_RS01560 at 352.519 kb on - strand, within RALBFv3_RS01560 at 352.521 kb on - strand, within RALBFv3_RS01560 at 352.572 kb on - strand, within RALBFv3_RS01560
Per-strain Table
Position Strand Gene LocusTag Fraction tomato xylem local (total stem) remove 349,971 - +1.8 350,487 - RALBFv3_RS01550 0.80 +0.3 350,512 + RALBFv3_RS01550 0.85 -0.0 350,586 + -1.9 350,587 - -0.7 351,038 - RALBFv3_RS01555 0.19 +1.4 351,505 + RALBFv3_RS01555 0.56 -1.4 351,700 + RALBFv3_RS01555 0.71 +1.4 351,701 - RALBFv3_RS01555 0.71 -0.4 351,712 + RALBFv3_RS01555 0.72 -1.6 352,060 + -2.3 352,476 - RALBFv3_RS01560 0.12 +0.3 352,476 - RALBFv3_RS01560 0.12 -2.2 352,519 - RALBFv3_RS01560 0.14 +0.4 352,521 - RALBFv3_RS01560 0.14 +1.3 352,572 - RALBFv3_RS01560 0.17 +0.2
Or see this region's nucleotide sequence