Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08455

Experiment: 6'-O-sialyllactose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	6'-O-sialyllactose 10 mg/mL (C)
1,136,246	+		HMPREF1058_RS08460	0.66	-1.6
1,136,330	+		HMPREF1058_RS08460	0.70	+0.0
1,136,415	+		HMPREF1058_RS08460	0.73	-0.3
1,136,463	+		HMPREF1058_RS08460	0.75	+0.0
1,136,466	+		HMPREF1058_RS08460	0.75	+1.5
1,136,468	+		HMPREF1058_RS08460	0.75	-0.4
1,136,475	+		HMPREF1058_RS08460	0.76	-0.9
1,136,475	+		HMPREF1058_RS08460	0.76	-0.4
1,136,493	+		HMPREF1058_RS08460	0.77	-0.2
1,136,628	-		HMPREF1058_RS08460	0.82	+0.4
1,136,772	+		HMPREF1058_RS08460	0.89	-0.1
1,136,773	-		HMPREF1058_RS08460	0.89	+0.8
1,136,874	+				-0.7
1,136,874	+				-0.3
1,136,875	-				+0.2
1,136,876	+				-1.6
1,137,013	+				-0.7
1,137,014	-				+0.5
1,137,086	-				-0.3
1,137,207	+				-1.1
1,137,207	+				-0.1
1,137,209	+				+1.6
1,137,209	+				-0.5
1,137,210	-				+0.5
1,137,210	-				-2.1
1,137,210	-				-0.2
1,137,210	-				+0.1
1,137,214	+				-0.8
1,137,276	+				-1.0
1,137,287	+		HMPREF1058_RS08455	0.11	-0.3
1,137,287	+		HMPREF1058_RS08455	0.11	-1.9
1,137,322	+		HMPREF1058_RS08455	0.14	-0.6
1,137,322	+		HMPREF1058_RS08455	0.14	-0.3
1,137,322	+		HMPREF1058_RS08455	0.14	+0.3
1,137,323	-		HMPREF1058_RS08455	0.14	-0.4
1,137,323	-		HMPREF1058_RS08455	0.14	-1.2
1,137,323	-		HMPREF1058_RS08455	0.14	-0.4
1,137,468	+		HMPREF1058_RS08455	0.28	-0.9
1,137,469	-		HMPREF1058_RS08455	0.28	-1.6
1,137,469	-		HMPREF1058_RS08455	0.28	-0.8
1,137,471	-		HMPREF1058_RS08455	0.28	-0.4
1,137,515	+		HMPREF1058_RS08455	0.32	-0.7
1,137,586	-		HMPREF1058_RS08455	0.39	+0.2
1,137,593	+		HMPREF1058_RS08455	0.40	-0.6
1,137,593	+		HMPREF1058_RS08455	0.40	-1.1
1,137,594	-		HMPREF1058_RS08455	0.40	-1.1
1,137,609	+		HMPREF1058_RS08455	0.41	-0.9
1,137,687	+		HMPREF1058_RS08455	0.49	-0.5
1,137,688	-		HMPREF1058_RS08455	0.49	-0.1
1,137,774	-		HMPREF1058_RS08455	0.57	-0.9
1,137,774	-		HMPREF1058_RS08455	0.57	+1.4
1,137,823	+		HMPREF1058_RS08455	0.62	-0.2
1,137,836	+		HMPREF1058_RS08455	0.63	-0.5
1,137,841	-		HMPREF1058_RS08455	0.64	+0.0
1,137,841	-		HMPREF1058_RS08455	0.64	-1.2
1,137,876	-		HMPREF1058_RS08455	0.67	-0.4
1,137,876	-		HMPREF1058_RS08455	0.67	-0.7
1,137,943	-		HMPREF1058_RS08455	0.74	+0.1
1,137,945	-		HMPREF1058_RS08455	0.74	+0.4
1,137,952	-		HMPREF1058_RS08455	0.74	-0.6
1,138,057	-		HMPREF1058_RS08455	0.85	-0.5
1,138,062	+		HMPREF1058_RS08455	0.85	-0.2
1,138,063	-		HMPREF1058_RS08455	0.85	-1.1
1,138,071	-		HMPREF1058_RS08455	0.86	-0.2
1,138,071	-		HMPREF1058_RS08455	0.86	-0.9
1,138,071	-		HMPREF1058_RS08455	0.86	-0.3
1,138,071	-		HMPREF1058_RS08455	0.86	-0.5
1,138,091	+		HMPREF1058_RS08455	0.88	-0.3
1,138,091	+		HMPREF1058_RS08455	0.88	-0.3
1,138,091	+		HMPREF1058_RS08455	0.88	-1.0
1,138,092	-		HMPREF1058_RS08455	0.88	-0.4
1,138,260	+				-0.0
1,138,261	-				-0.3
1,138,282	-				-1.3
1,138,437	-				-0.4
1,138,455	-				+0.5
1,138,527	+				-0.1
1,138,528	-				-0.1
1,138,529	+				+0.3
1,138,530	-				+1.0
1,138,530	-				+1.6
1,138,535	-				-0.4
1,138,545	+				-0.2
1,138,801	+				-0.5
1,138,802	-				+1.0
1,138,802	-				-0.4
1,139,126	+		HMPREF1058_RS08450	0.17	-0.4
1,139,126	+		HMPREF1058_RS08450	0.17	-1.2
1,139,127	-		HMPREF1058_RS08450	0.17	+0.2
1,139,127	-		HMPREF1058_RS08450	0.17	-0.1
1,139,136	+		HMPREF1058_RS08450	0.17	-0.6
1,139,153	+		HMPREF1058_RS08450	0.18	+0.9
1,139,154	-		HMPREF1058_RS08450	0.18	+0.4
1,139,179	+		HMPREF1058_RS08450	0.18	+0.2