Experiment: 3'-fucosyllactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01195 and HMPREF1058_RS01190 are separated by 87 nucleotides HMPREF1058_RS01190 and HMPREF1058_RS01185 are separated by 7 nucleotides HMPREF1058_RS01185 and HMPREF1058_RS01180 are separated by 59 nucleotides HMPREF1058_RS01180 and HMPREF1058_RS01175 are separated by 19 nucleotides
HMPREF1058_RS01195: HMPREF1058_RS01195 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 183,392 to 184,579
_RS01195
HMPREF1058_RS01190: HMPREF1058_RS01190 - DMT family transporter, at 184,667 to 185,554
_RS01190
HMPREF1058_RS01185: HMPREF1058_RS01185 - ABC transporter permease, at 185,562 to 187,913
_RS01185
HMPREF1058_RS01180: HMPREF1058_RS01180 - ABC transporter ATP-binding protein, at 187,973 to 188,647
_RS01180
HMPREF1058_RS01175: HMPREF1058_RS01175 - FtsX-like permease family protein, at 188,667 to 191,066
_RS01175
Position (kb) 185
186
187
188 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 184.572 kb on + strand at 184.626 kb on + strand at 184.626 kb on + strand at 184.626 kb on + strand at 184.626 kb on + strand at 184.627 kb on - strand at 184.627 kb on - strand at 184.629 kb on + strand at 184.630 kb on - strand at 184.653 kb on + strand at 184.690 kb on - strand at 184.851 kb on + strand, within HMPREF1058_RS01190 at 184.852 kb on - strand, within HMPREF1058_RS01190 at 184.852 kb on - strand, within HMPREF1058_RS01190 at 184.857 kb on - strand, within HMPREF1058_RS01190 at 184.923 kb on + strand, within HMPREF1058_RS01190 at 184.924 kb on - strand, within HMPREF1058_RS01190 at 184.958 kb on - strand, within HMPREF1058_RS01190 at 184.970 kb on - strand, within HMPREF1058_RS01190 at 184.970 kb on - strand, within HMPREF1058_RS01190 at 184.974 kb on - strand, within HMPREF1058_RS01190 at 185.062 kb on - strand, within HMPREF1058_RS01190 at 185.073 kb on + strand, within HMPREF1058_RS01190 at 185.077 kb on - strand, within HMPREF1058_RS01190 at 185.092 kb on - strand, within HMPREF1058_RS01190 at 185.096 kb on + strand, within HMPREF1058_RS01190 at 185.099 kb on - strand, within HMPREF1058_RS01190 at 185.163 kb on - strand, within HMPREF1058_RS01190 at 185.164 kb on + strand, within HMPREF1058_RS01190 at 185.166 kb on + strand, within HMPREF1058_RS01190 at 185.167 kb on - strand, within HMPREF1058_RS01190 at 185.169 kb on + strand, within HMPREF1058_RS01190 at 185.169 kb on + strand, within HMPREF1058_RS01190 at 185.169 kb on + strand, within HMPREF1058_RS01190 at 185.169 kb on + strand, within HMPREF1058_RS01190 at 185.169 kb on + strand, within HMPREF1058_RS01190 at 185.170 kb on - strand, within HMPREF1058_RS01190 at 185.173 kb on + strand, within HMPREF1058_RS01190 at 185.174 kb on - strand, within HMPREF1058_RS01190 at 185.174 kb on - strand, within HMPREF1058_RS01190 at 185.176 kb on - strand, within HMPREF1058_RS01190 at 185.206 kb on + strand, within HMPREF1058_RS01190 at 185.206 kb on + strand, within HMPREF1058_RS01190 at 185.212 kb on - strand, within HMPREF1058_RS01190 at 185.270 kb on + strand, within HMPREF1058_RS01190 at 185.270 kb on + strand, within HMPREF1058_RS01190 at 185.316 kb on - strand, within HMPREF1058_RS01190 at 185.449 kb on - strand, within HMPREF1058_RS01190 at 185.449 kb on - strand, within HMPREF1058_RS01190 at 185.449 kb on - strand, within HMPREF1058_RS01190 at 185.473 kb on + strand at 185.473 kb on + strand at 185.474 kb on - strand at 185.478 kb on - strand at 185.478 kb on - strand at 185.547 kb on - strand at 185.548 kb on + strand at 185.549 kb on - strand at 185.549 kb on - strand at 185.552 kb on + strand at 185.609 kb on - strand at 185.612 kb on + strand at 185.612 kb on + strand at 185.613 kb on - strand at 185.613 kb on - strand at 185.613 kb on - strand at 185.616 kb on + strand at 185.616 kb on + strand at 185.616 kb on + strand at 185.617 kb on - strand at 185.617 kb on - strand at 185.636 kb on + strand at 185.646 kb on + strand at 185.647 kb on - strand at 185.651 kb on + strand at 185.755 kb on + strand at 185.755 kb on + strand at 185.755 kb on + strand at 185.755 kb on + strand at 185.761 kb on - strand at 185.761 kb on - strand at 185.761 kb on - strand at 185.763 kb on + strand at 185.800 kb on - strand, within HMPREF1058_RS01185 at 185.863 kb on - strand, within HMPREF1058_RS01185 at 185.863 kb on - strand, within HMPREF1058_RS01185 at 185.916 kb on - strand, within HMPREF1058_RS01185 at 185.916 kb on - strand, within HMPREF1058_RS01185 at 185.930 kb on + strand, within HMPREF1058_RS01185 at 185.953 kb on - strand, within HMPREF1058_RS01185 at 185.953 kb on - strand, within HMPREF1058_RS01185 at 185.991 kb on + strand, within HMPREF1058_RS01185 at 185.991 kb on + strand, within HMPREF1058_RS01185 at 186.060 kb on - strand, within HMPREF1058_RS01185 at 186.062 kb on - strand, within HMPREF1058_RS01185 at 186.062 kb on - strand, within HMPREF1058_RS01185 at 186.087 kb on + strand, within HMPREF1058_RS01185 at 186.087 kb on + strand, within HMPREF1058_RS01185 at 186.087 kb on + strand, within HMPREF1058_RS01185 at 186.128 kb on + strand, within HMPREF1058_RS01185 at 186.133 kb on - strand, within HMPREF1058_RS01185 at 186.197 kb on + strand, within HMPREF1058_RS01185 at 186.246 kb on + strand, within HMPREF1058_RS01185 at 186.261 kb on + strand, within HMPREF1058_RS01185 at 186.261 kb on + strand, within HMPREF1058_RS01185 at 186.262 kb on - strand, within HMPREF1058_RS01185 at 186.308 kb on + strand, within HMPREF1058_RS01185 at 186.309 kb on - strand, within HMPREF1058_RS01185 at 186.400 kb on - strand, within HMPREF1058_RS01185 at 186.401 kb on + strand, within HMPREF1058_RS01185 at 186.408 kb on - strand, within HMPREF1058_RS01185 at 186.419 kb on + strand, within HMPREF1058_RS01185 at 186.460 kb on + strand, within HMPREF1058_RS01185 at 186.465 kb on + strand, within HMPREF1058_RS01185 at 186.466 kb on - strand, within HMPREF1058_RS01185 at 186.486 kb on + strand, within HMPREF1058_RS01185 at 186.487 kb on - strand, within HMPREF1058_RS01185 at 186.487 kb on - strand, within HMPREF1058_RS01185 at 186.488 kb on + strand, within HMPREF1058_RS01185 at 186.489 kb on - strand, within HMPREF1058_RS01185 at 186.555 kb on + strand, within HMPREF1058_RS01185 at 186.755 kb on + strand, within HMPREF1058_RS01185 at 186.757 kb on + strand, within HMPREF1058_RS01185 at 186.757 kb on + strand, within HMPREF1058_RS01185 at 186.758 kb on - strand, within HMPREF1058_RS01185 at 186.795 kb on + strand, within HMPREF1058_RS01185 at 186.808 kb on - strand, within HMPREF1058_RS01185 at 186.915 kb on + strand, within HMPREF1058_RS01185 at 186.987 kb on + strand, within HMPREF1058_RS01185 at 186.987 kb on + strand, within HMPREF1058_RS01185 at 186.987 kb on + strand, within HMPREF1058_RS01185 at 186.988 kb on - strand, within HMPREF1058_RS01185 at 186.989 kb on + strand, within HMPREF1058_RS01185 at 187.038 kb on - strand, within HMPREF1058_RS01185 at 187.091 kb on - strand, within HMPREF1058_RS01185 at 187.187 kb on - strand, within HMPREF1058_RS01185 at 187.206 kb on + strand, within HMPREF1058_RS01185 at 187.206 kb on + strand, within HMPREF1058_RS01185 at 187.248 kb on + strand, within HMPREF1058_RS01185 at 187.269 kb on + strand, within HMPREF1058_RS01185 at 187.281 kb on + strand, within HMPREF1058_RS01185 at 187.282 kb on - strand, within HMPREF1058_RS01185 at 187.360 kb on - strand, within HMPREF1058_RS01185 at 187.362 kb on - strand, within HMPREF1058_RS01185 at 187.369 kb on - strand, within HMPREF1058_RS01185 at 187.374 kb on - strand, within HMPREF1058_RS01185 at 187.542 kb on + strand, within HMPREF1058_RS01185 at 187.543 kb on - strand, within HMPREF1058_RS01185 at 187.580 kb on + strand, within HMPREF1058_RS01185 at 187.634 kb on + strand, within HMPREF1058_RS01185 at 187.651 kb on + strand, within HMPREF1058_RS01185 at 187.703 kb on + strand at 187.776 kb on - strand at 187.799 kb on + strand at 187.919 kb on + strand at 187.923 kb on - strand at 187.936 kb on + strand at 187.960 kb on - strand at 188.156 kb on + strand, within HMPREF1058_RS01180 at 188.193 kb on - strand, within HMPREF1058_RS01180 at 188.193 kb on - strand, within HMPREF1058_RS01180 at 188.319 kb on + strand, within HMPREF1058_RS01180 at 188.319 kb on + strand, within HMPREF1058_RS01180 at 188.320 kb on - strand, within HMPREF1058_RS01180 at 188.320 kb on - strand, within HMPREF1058_RS01180 at 188.320 kb on - strand at 188.348 kb on + strand, within HMPREF1058_RS01180 at 188.408 kb on + strand, within HMPREF1058_RS01180 at 188.547 kb on - strand, within HMPREF1058_RS01180 at 188.570 kb on + strand, within HMPREF1058_RS01180 at 188.648 kb on - strand at 188.653 kb on + strand at 188.744 kb on + strand at 188.778 kb on + strand at 188.778 kb on + strand at 188.779 kb on - strand at 188.779 kb on - strand at 188.807 kb on - strand at 188.827 kb on - strand at 188.827 kb on - strand at 188.833 kb on - strand at 188.836 kb on + strand at 188.882 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3'-fucosyllactose 10 mg/mL (C) remove 184,572 + +1.0 184,626 + -1.7 184,626 + +0.8 184,626 + +1.4 184,626 + +0.9 184,627 - -0.5 184,627 - +1.3 184,629 + +1.8 184,630 - -0.3 184,653 + +0.1 184,690 - +0.1 184,851 + HMPREF1058_RS01190 0.21 -1.0 184,852 - HMPREF1058_RS01190 0.21 +0.7 184,852 - HMPREF1058_RS01190 0.21 -0.1 184,857 - HMPREF1058_RS01190 0.21 +1.2 184,923 + HMPREF1058_RS01190 0.29 +0.9 184,924 - HMPREF1058_RS01190 0.29 +0.5 184,958 - HMPREF1058_RS01190 0.33 +1.0 184,970 - HMPREF1058_RS01190 0.34 +0.2 184,970 - HMPREF1058_RS01190 0.34 -0.0 184,974 - HMPREF1058_RS01190 0.35 -0.0 185,062 - HMPREF1058_RS01190 0.44 -0.6 185,073 + HMPREF1058_RS01190 0.46 +0.9 185,077 - HMPREF1058_RS01190 0.46 -1.2 185,092 - HMPREF1058_RS01190 0.48 +0.0 185,096 + HMPREF1058_RS01190 0.48 -1.0 185,099 - HMPREF1058_RS01190 0.49 -1.6 185,163 - HMPREF1058_RS01190 0.56 +0.5 185,164 + HMPREF1058_RS01190 0.56 -0.3 185,166 + HMPREF1058_RS01190 0.56 -0.3 185,167 - HMPREF1058_RS01190 0.56 +2.8 185,169 + HMPREF1058_RS01190 0.57 +0.0 185,169 + HMPREF1058_RS01190 0.57 -1.0 185,169 + HMPREF1058_RS01190 0.57 +0.2 185,169 + HMPREF1058_RS01190 0.57 +0.2 185,169 + HMPREF1058_RS01190 0.57 +1.4 185,170 - HMPREF1058_RS01190 0.57 +1.2 185,173 + HMPREF1058_RS01190 0.57 -2.2 185,174 - HMPREF1058_RS01190 0.57 -0.7 185,174 - HMPREF1058_RS01190 0.57 +2.8 185,176 - HMPREF1058_RS01190 0.57 -0.4 185,206 + HMPREF1058_RS01190 0.61 -0.2 185,206 + HMPREF1058_RS01190 0.61 -0.6 185,212 - HMPREF1058_RS01190 0.61 -0.6 185,270 + HMPREF1058_RS01190 0.68 +0.3 185,270 + HMPREF1058_RS01190 0.68 +0.0 185,316 - HMPREF1058_RS01190 0.73 -0.5 185,449 - HMPREF1058_RS01190 0.88 +0.1 185,449 - HMPREF1058_RS01190 0.88 -0.6 185,449 - HMPREF1058_RS01190 0.88 -0.2 185,473 + +0.1 185,473 + +0.0 185,474 - -0.7 185,478 - +0.2 185,478 - +1.0 185,547 - -0.6 185,548 + -2.8 185,549 - -0.7 185,549 - -0.4 185,552 + +0.8 185,609 - -2.3 185,612 + -2.3 185,612 + -1.0 185,613 - +1.0 185,613 - -1.0 185,613 - -0.3 185,616 + +1.5 185,616 + +0.7 185,616 + +1.0 185,617 - +1.0 185,617 - +0.0 185,636 + -0.6 185,646 + +0.4 185,647 - +1.0 185,651 + +1.8 185,755 + +0.5 185,755 + -0.7 185,755 + -1.2 185,755 + -0.1 185,761 - +0.7 185,761 - +0.3 185,761 - +0.8 185,763 + -0.5 185,800 - HMPREF1058_RS01185 0.10 -1.6 185,863 - HMPREF1058_RS01185 0.13 +1.5 185,863 - HMPREF1058_RS01185 0.13 -0.6 185,916 - HMPREF1058_RS01185 0.15 +0.4 185,916 - HMPREF1058_RS01185 0.15 +1.5 185,930 + HMPREF1058_RS01185 0.16 +0.8 185,953 - HMPREF1058_RS01185 0.17 -0.3 185,953 - HMPREF1058_RS01185 0.17 -2.0 185,991 + HMPREF1058_RS01185 0.18 +1.4 185,991 + HMPREF1058_RS01185 0.18 -1.9 186,060 - HMPREF1058_RS01185 0.21 -0.1 186,062 - HMPREF1058_RS01185 0.21 +0.5 186,062 - HMPREF1058_RS01185 0.21 -0.1 186,087 + HMPREF1058_RS01185 0.22 +1.0 186,087 + HMPREF1058_RS01185 0.22 +1.0 186,087 + HMPREF1058_RS01185 0.22 +2.2 186,128 + HMPREF1058_RS01185 0.24 -0.9 186,133 - HMPREF1058_RS01185 0.24 -0.3 186,197 + HMPREF1058_RS01185 0.27 -0.3 186,246 + HMPREF1058_RS01185 0.29 -0.3 186,261 + HMPREF1058_RS01185 0.30 -0.5 186,261 + HMPREF1058_RS01185 0.30 +0.6 186,262 - HMPREF1058_RS01185 0.30 +0.3 186,308 + HMPREF1058_RS01185 0.32 -1.0 186,309 - HMPREF1058_RS01185 0.32 +0.2 186,400 - HMPREF1058_RS01185 0.36 +2.4 186,401 + HMPREF1058_RS01185 0.36 -0.4 186,408 - HMPREF1058_RS01185 0.36 +1.2 186,419 + HMPREF1058_RS01185 0.36 +3.2 186,460 + HMPREF1058_RS01185 0.38 -1.2 186,465 + HMPREF1058_RS01185 0.38 -0.4 186,466 - HMPREF1058_RS01185 0.38 +0.8 186,486 + HMPREF1058_RS01185 0.39 +1.0 186,487 - HMPREF1058_RS01185 0.39 +0.4 186,487 - HMPREF1058_RS01185 0.39 +1.2 186,488 + HMPREF1058_RS01185 0.39 -1.0 186,489 - HMPREF1058_RS01185 0.39 +0.7 186,555 + HMPREF1058_RS01185 0.42 -0.7 186,755 + HMPREF1058_RS01185 0.51 -1.5 186,757 + HMPREF1058_RS01185 0.51 +0.2 186,757 + HMPREF1058_RS01185 0.51 +1.4 186,758 - HMPREF1058_RS01185 0.51 +0.3 186,795 + HMPREF1058_RS01185 0.52 +1.5 186,808 - HMPREF1058_RS01185 0.53 +0.5 186,915 + HMPREF1058_RS01185 0.58 -0.0 186,987 + HMPREF1058_RS01185 0.61 +1.0 186,987 + HMPREF1058_RS01185 0.61 -0.1 186,987 + HMPREF1058_RS01185 0.61 -0.2 186,988 - HMPREF1058_RS01185 0.61 +0.4 186,989 + HMPREF1058_RS01185 0.61 +0.5 187,038 - HMPREF1058_RS01185 0.63 +0.1 187,091 - HMPREF1058_RS01185 0.65 +1.8 187,187 - HMPREF1058_RS01185 0.69 -0.0 187,206 + HMPREF1058_RS01185 0.70 -0.7 187,206 + HMPREF1058_RS01185 0.70 -0.1 187,248 + HMPREF1058_RS01185 0.72 -0.5 187,269 + HMPREF1058_RS01185 0.73 +0.8 187,281 + HMPREF1058_RS01185 0.73 -0.1 187,282 - HMPREF1058_RS01185 0.73 +0.9 187,360 - HMPREF1058_RS01185 0.76 +0.9 187,362 - HMPREF1058_RS01185 0.77 +0.3 187,369 - HMPREF1058_RS01185 0.77 +0.1 187,374 - HMPREF1058_RS01185 0.77 +1.5 187,542 + HMPREF1058_RS01185 0.84 +2.1 187,543 - HMPREF1058_RS01185 0.84 +0.1 187,580 + HMPREF1058_RS01185 0.86 +1.2 187,634 + HMPREF1058_RS01185 0.88 -0.7 187,651 + HMPREF1058_RS01185 0.89 +1.1 187,703 + +1.4 187,776 - +0.3 187,799 + +0.8 187,919 + +0.1 187,923 - +2.0 187,936 + +0.5 187,960 - +0.3 188,156 + HMPREF1058_RS01180 0.27 +1.3 188,193 - HMPREF1058_RS01180 0.33 -0.7 188,193 - HMPREF1058_RS01180 0.33 +2.0 188,319 + HMPREF1058_RS01180 0.51 -0.5 188,319 + HMPREF1058_RS01180 0.51 -0.7 188,320 - HMPREF1058_RS01180 0.51 +3.4 188,320 - HMPREF1058_RS01180 0.51 -0.3 188,320 - +0.8 188,348 + HMPREF1058_RS01180 0.56 -2.3 188,408 + HMPREF1058_RS01180 0.64 +0.7 188,547 - HMPREF1058_RS01180 0.85 +0.9 188,570 + HMPREF1058_RS01180 0.88 +2.7 188,648 - +0.5 188,653 + +0.1 188,744 + -0.9 188,778 + -1.0 188,778 + -0.2 188,779 - -1.2 188,779 - +0.8 188,807 - -0.4 188,827 - +0.2 188,827 - -0.5 188,833 - -1.1 188,836 + +0.8 188,882 + +0.8
Or see this region's nucleotide sequence