Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13135

Experiment: 2'-fucosyllactose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2'-fucosyllactose 10 mg/mL (C)
1,583,600	+		HMPREF1058_RS13140	0.24	-0.6
1,583,621	-		HMPREF1058_RS13140	0.28	+0.5
1,583,627	+		HMPREF1058_RS13140	0.29	+1.2
1,583,672	+		HMPREF1058_RS13140	0.36	+2.3
1,583,672	+		HMPREF1058_RS13140	0.36	-1.6
1,583,672	+		HMPREF1058_RS13140	0.36	+0.5
1,583,808	+		HMPREF1058_RS13140	0.57	-1.3
1,583,808	+		HMPREF1058_RS13140	0.57	-2.3
1,583,809	-		HMPREF1058_RS13140	0.58	+1.7
1,583,811	-		HMPREF1058_RS13140	0.58	-0.3
1,583,847	+		HMPREF1058_RS13140	0.64	-0.8
1,583,848	-		HMPREF1058_RS13140	0.64	-0.1
1,583,859	+		HMPREF1058_RS13140	0.66	-0.4
1,583,865	+		HMPREF1058_RS13140	0.67	+1.0
1,583,866	-		HMPREF1058_RS13140	0.67	+1.2
1,583,943	+		HMPREF1058_RS13140	0.79	+0.5
1,583,945	+		HMPREF1058_RS13140	0.79	-1.2
1,583,951	+		HMPREF1058_RS13140	0.80	-0.9
1,584,142	+				-0.4
1,584,143	-				-0.1
1,584,143	-				-0.6
1,584,144	+				+1.0
1,584,146	+				+0.1
1,584,149	+				-1.1
1,584,150	-				-0.1
1,584,150	-				+1.9
1,584,151	+				+0.7
1,584,173	-				+0.0
1,584,209	+				-0.2
1,584,242	+				+0.1
1,584,248	+				+1.9
1,584,260	+				-0.2
1,584,261	-				+0.3
1,584,261	-				+0.5
1,584,266	+				-0.2
1,584,352	+				-0.8
1,584,353	-				-0.9
1,584,358	+				-0.7
1,584,358	+				-1.3
1,584,359	-				-0.4
1,584,359	-				+0.7
1,584,361	+				-0.5
1,584,362	-				+2.0
1,584,363	+				+0.2
1,584,422	-				-0.7
1,584,425	+				+1.8
1,584,426	-				+0.0
1,584,458	+		HMPREF1058_RS13135	0.14	+1.6
1,584,458	+		HMPREF1058_RS13135	0.14	+1.0
1,584,459	-		HMPREF1058_RS13135	0.14	+0.2
1,584,459	-		HMPREF1058_RS13135	0.14	+3.5
1,584,506	+		HMPREF1058_RS13135	0.27	-0.2
1,584,506	+		HMPREF1058_RS13135	0.27	+1.8
1,584,507	-		HMPREF1058_RS13135	0.27	+0.1
1,584,507	-		HMPREF1058_RS13135	0.27	+0.4
1,584,509	+		HMPREF1058_RS13135	0.27	-0.0
1,584,529	+		HMPREF1058_RS13135	0.33	+1.0
1,584,577	+		HMPREF1058_RS13135	0.45	+1.2
1,584,578	-		HMPREF1058_RS13135	0.45	+0.7
1,584,594	+		HMPREF1058_RS13135	0.49	-1.0
1,584,680	+		HMPREF1058_RS13135	0.72	+0.9
1,584,690	-		HMPREF1058_RS13135	0.74	-1.5
1,584,764	-				-0.4
1,584,893	-				-1.0
1,584,893	-				-0.7
1,584,929	+				-0.9
1,584,947	-		HMPREF1058_RS13130	0.12	+0.4
1,584,947	-		HMPREF1058_RS13130	0.12	-1.2
1,584,947	-		HMPREF1058_RS13130	0.12	-1.0
1,584,947	-		HMPREF1058_RS13130	0.12	-2.0
1,584,947	-		HMPREF1058_RS13130	0.12	-1.5
1,584,950	+				+0.5
1,584,951	-		HMPREF1058_RS13130	0.12	-0.4
1,584,952	+		HMPREF1058_RS13130	0.12	+0.5
1,584,952	+		HMPREF1058_RS13130	0.12	+2.0
1,584,952	+		HMPREF1058_RS13130	0.12	-0.5
1,585,017	-		HMPREF1058_RS13130	0.21	+0.4
1,585,035	-		HMPREF1058_RS13130	0.24	-1.9
1,585,048	+		HMPREF1058_RS13130	0.25	+0.4
1,585,079	+		HMPREF1058_RS13130	0.29	+0.9
1,585,079	+		HMPREF1058_RS13130	0.29	-0.6
1,585,125	-		HMPREF1058_RS13130	0.35	+0.1
1,585,130	+		HMPREF1058_RS13130	0.36	+2.0
1,585,250	-		HMPREF1058_RS13130	0.52	+0.2
1,585,377	+		HMPREF1058_RS13130	0.69	-0.5
1,585,379	+		HMPREF1058_RS13130	0.69	+0.4
1,585,451	+		HMPREF1058_RS13130	0.79	+0.0
1,585,461	+		HMPREF1058_RS13130	0.80	+0.0
1,585,461	+		HMPREF1058_RS13130	0.80	+0.7
1,585,462	-		HMPREF1058_RS13130	0.80	+1.3
1,585,576	+				+0.1
1,585,576	+				-0.8
1,585,576	+				+1.3
1,585,577	-				+1.9
1,585,624	-				-0.5
1,585,642	-				-0.3
1,585,667	+				-0.2
1,585,721	+				-2.2
1,585,722	-				+0.4
1,585,724	-				-1.3
1,585,724	-				+1.0
1,585,725	+				+0.1
1,585,726	-				+0.7
1,585,744	-				+0.8