Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS06535

Experiment: 2'-fucosyllactose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS06545 and HMPREF1058_RS06540 are separated by 108 nucleotidesHMPREF1058_RS06540 and HMPREF1058_RS06535 are separated by 55 nucleotidesHMPREF1058_RS06535 and HMPREF1058_RS06530 are separated by 85 nucleotides HMPREF1058_RS06545: HMPREF1058_RS06545 - transcriptional regulator, at 452,741 to 453,838 _RS06545 HMPREF1058_RS06540: HMPREF1058_RS06540 - hypothetical protein, at 453,947 to 454,168 _RS06540 HMPREF1058_RS06535: HMPREF1058_RS06535 - hypothetical protein, at 454,224 to 454,433 _RS06535 HMPREF1058_RS06530: HMPREF1058_RS06530 - flippase, at 454,519 to 455,991 _RS06530 Position (kb) 454 455Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 453.399 kb on + strand, within HMPREF1058_RS06545at 453.399 kb on + strand, within HMPREF1058_RS06545at 453.399 kb on + strand, within HMPREF1058_RS06545at 453.399 kb on + strand, within HMPREF1058_RS06545at 453.399 kb on + strand, within HMPREF1058_RS06545at 453.399 kb on + strand, within HMPREF1058_RS06545at 453.400 kb on - strand, within HMPREF1058_RS06545at 453.400 kb on - strandat 453.400 kb on - strand, within HMPREF1058_RS06545at 453.400 kb on - strand, within HMPREF1058_RS06545at 453.400 kb on - strand, within HMPREF1058_RS06545at 453.400 kb on - strand, within HMPREF1058_RS06545at 453.401 kb on + strand, within HMPREF1058_RS06545at 453.424 kb on + strand, within HMPREF1058_RS06545at 453.424 kb on + strand, within HMPREF1058_RS06545at 453.567 kb on - strand, within HMPREF1058_RS06545at 453.587 kb on + strand, within HMPREF1058_RS06545at 453.587 kb on + strand, within HMPREF1058_RS06545at 453.589 kb on + strand, within HMPREF1058_RS06545at 453.589 kb on + strand, within HMPREF1058_RS06545at 453.590 kb on - strand, within HMPREF1058_RS06545at 453.590 kb on - strand, within HMPREF1058_RS06545at 453.592 kb on + strand, within HMPREF1058_RS06545at 453.592 kb on + strand, within HMPREF1058_RS06545at 453.593 kb on - strand, within HMPREF1058_RS06545at 453.643 kb on + strand, within HMPREF1058_RS06545at 453.722 kb on + strand, within HMPREF1058_RS06545at 453.722 kb on + strand, within HMPREF1058_RS06545at 453.722 kb on + strand, within HMPREF1058_RS06545at 453.723 kb on - strand, within HMPREF1058_RS06545at 453.816 kb on - strandat 453.850 kb on - strandat 453.939 kb on + strandat 454.052 kb on + strand, within HMPREF1058_RS06540at 454.053 kb on - strand, within HMPREF1058_RS06540at 454.053 kb on - strand, within HMPREF1058_RS06540at 454.085 kb on - strand, within HMPREF1058_RS06540at 454.157 kb on + strandat 454.158 kb on - strandat 454.159 kb on + strandat 454.171 kb on + strandat 454.171 kb on + strandat 454.171 kb on + strandat 454.172 kb on - strandat 454.200 kb on + strandat 454.257 kb on - strand, within HMPREF1058_RS06535at 454.262 kb on - strand, within HMPREF1058_RS06535at 454.262 kb on - strand, within HMPREF1058_RS06535at 454.292 kb on - strand, within HMPREF1058_RS06535at 454.294 kb on + strand, within HMPREF1058_RS06535at 454.294 kb on + strand, within HMPREF1058_RS06535at 454.295 kb on - strand, within HMPREF1058_RS06535at 454.316 kb on + strand, within HMPREF1058_RS06535at 454.393 kb on + strand, within HMPREF1058_RS06535at 454.393 kb on + strand, within HMPREF1058_RS06535at 454.393 kb on + strand, within HMPREF1058_RS06535at 454.394 kb on - strandat 454.394 kb on - strand, within HMPREF1058_RS06535at 454.423 kb on + strandat 454.501 kb on - strandat 454.507 kb on + strandat 454.507 kb on + strandat 454.509 kb on + strandat 454.510 kb on - strandat 454.511 kb on + strandat 454.511 kb on + strandat 454.512 kb on - strandat 454.533 kb on - strandat 454.544 kb on - strandat 454.706 kb on - strand, within HMPREF1058_RS06530at 454.706 kb on - strand, within HMPREF1058_RS06530at 454.706 kb on - strand, within HMPREF1058_RS06530at 454.706 kb on - strand, within HMPREF1058_RS06530at 454.706 kb on - strand, within HMPREF1058_RS06530at 454.706 kb on - strand, within HMPREF1058_RS06530at 454.712 kb on + strand, within HMPREF1058_RS06530at 454.782 kb on - strand, within HMPREF1058_RS06530at 454.795 kb on - strand, within HMPREF1058_RS06530at 454.810 kb on - strand, within HMPREF1058_RS06530at 454.842 kb on + strand, within HMPREF1058_RS06530at 454.843 kb on - strand, within HMPREF1058_RS06530at 454.860 kb on - strand, within HMPREF1058_RS06530at 454.971 kb on - strand, within HMPREF1058_RS06530at 454.987 kb on - strand, within HMPREF1058_RS06530at 455.027 kb on + strand, within HMPREF1058_RS06530at 455.033 kb on - strand, within HMPREF1058_RS06530at 455.113 kb on - strand, within HMPREF1058_RS06530at 455.163 kb on - strand, within HMPREF1058_RS06530at 455.167 kb on - strand, within HMPREF1058_RS06530at 455.167 kb on - strand, within HMPREF1058_RS06530at 455.197 kb on + strand, within HMPREF1058_RS06530at 455.198 kb on - strand, within HMPREF1058_RS06530at 455.216 kb on + strand, within HMPREF1058_RS06530at 455.290 kb on - strand, within HMPREF1058_RS06530at 455.318 kb on + strand, within HMPREF1058_RS06530at 455.319 kb on - strand, within HMPREF1058_RS06530at 455.400 kb on + strand, within HMPREF1058_RS06530at 455.406 kb on - strand, within HMPREF1058_RS06530

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-fucosyllactose 10 mg/mL (C)
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453,399 + HMPREF1058_RS06545 0.60 -1.1
453,399 + HMPREF1058_RS06545 0.60 +0.0
453,399 + HMPREF1058_RS06545 0.60 +0.0
453,399 + HMPREF1058_RS06545 0.60 +0.6
453,399 + HMPREF1058_RS06545 0.60 +1.0
453,399 + HMPREF1058_RS06545 0.60 +1.1
453,400 - HMPREF1058_RS06545 0.60 +1.0
453,400 - +0.3
453,400 - HMPREF1058_RS06545 0.60 -2.0
453,400 - HMPREF1058_RS06545 0.60 +2.0
453,400 - HMPREF1058_RS06545 0.60 -0.7
453,400 - HMPREF1058_RS06545 0.60 +2.3
453,401 + HMPREF1058_RS06545 0.60 +6.4
453,424 + HMPREF1058_RS06545 0.62 +3.0
453,424 + HMPREF1058_RS06545 0.62 -0.6
453,567 - HMPREF1058_RS06545 0.75 +2.7
453,587 + HMPREF1058_RS06545 0.77 -1.1
453,587 + HMPREF1058_RS06545 0.77 +0.7
453,589 + HMPREF1058_RS06545 0.77 +2.3
453,589 + HMPREF1058_RS06545 0.77 +2.0
453,590 - HMPREF1058_RS06545 0.77 +0.6
453,590 - HMPREF1058_RS06545 0.77 +1.7
453,592 + HMPREF1058_RS06545 0.78 -0.3
453,592 + HMPREF1058_RS06545 0.78 +1.3
453,593 - HMPREF1058_RS06545 0.78 -0.2
453,643 + HMPREF1058_RS06545 0.82 -0.9
453,722 + HMPREF1058_RS06545 0.89 +1.6
453,722 + HMPREF1058_RS06545 0.89 +3.3
453,722 + HMPREF1058_RS06545 0.89 -0.6
453,723 - HMPREF1058_RS06545 0.89 +1.3
453,816 - +3.3
453,850 - -1.0
453,939 + -0.6
454,052 + HMPREF1058_RS06540 0.47 -0.5
454,053 - HMPREF1058_RS06540 0.48 -0.5
454,053 - HMPREF1058_RS06540 0.48 -1.3
454,085 - HMPREF1058_RS06540 0.62 -0.9
454,157 + -0.2
454,158 - +0.5
454,159 + +1.0
454,171 + -1.0
454,171 + +0.8
454,171 + -0.3
454,172 - +1.6
454,200 + -0.8
454,257 - HMPREF1058_RS06535 0.16 -2.0
454,262 - HMPREF1058_RS06535 0.18 +0.1
454,262 - HMPREF1058_RS06535 0.18 -0.6
454,292 - HMPREF1058_RS06535 0.32 +0.9
454,294 + HMPREF1058_RS06535 0.33 +0.3
454,294 + HMPREF1058_RS06535 0.33 +1.1
454,295 - HMPREF1058_RS06535 0.34 +6.2
454,316 + HMPREF1058_RS06535 0.44 -0.5
454,393 + HMPREF1058_RS06535 0.80 -0.1
454,393 + HMPREF1058_RS06535 0.80 +1.3
454,393 + HMPREF1058_RS06535 0.80 +0.7
454,394 - +1.3
454,394 - HMPREF1058_RS06535 0.81 +1.3
454,423 + +0.7
454,501 - +3.3
454,507 + +1.9
454,507 + +0.3
454,509 + +0.3
454,510 - +0.4
454,511 + +1.7
454,511 + +1.2
454,512 - +0.7
454,533 - -0.6
454,544 - -1.3
454,706 - HMPREF1058_RS06530 0.13 -0.3
454,706 - HMPREF1058_RS06530 0.13 -1.7
454,706 - HMPREF1058_RS06530 0.13 +0.3
454,706 - HMPREF1058_RS06530 0.13 -0.6
454,706 - HMPREF1058_RS06530 0.13 +0.8
454,706 - HMPREF1058_RS06530 0.13 +2.6
454,712 + HMPREF1058_RS06530 0.13 +0.6
454,782 - HMPREF1058_RS06530 0.18 -2.0
454,795 - HMPREF1058_RS06530 0.19 +0.4
454,810 - HMPREF1058_RS06530 0.20 +1.4
454,842 + HMPREF1058_RS06530 0.22 +0.6
454,843 - HMPREF1058_RS06530 0.22 +0.1
454,860 - HMPREF1058_RS06530 0.23 +2.0
454,971 - HMPREF1058_RS06530 0.31 +1.5
454,987 - HMPREF1058_RS06530 0.32 +0.3
455,027 + HMPREF1058_RS06530 0.34 -0.2
455,033 - HMPREF1058_RS06530 0.35 +0.5
455,113 - HMPREF1058_RS06530 0.40 -1.4
455,163 - HMPREF1058_RS06530 0.44 -1.8
455,167 - HMPREF1058_RS06530 0.44 -0.7
455,167 - HMPREF1058_RS06530 0.44 +0.4
455,197 + HMPREF1058_RS06530 0.46 +0.3
455,198 - HMPREF1058_RS06530 0.46 +0.7
455,216 + HMPREF1058_RS06530 0.47 +0.3
455,290 - HMPREF1058_RS06530 0.52 -0.7
455,318 + HMPREF1058_RS06530 0.54 -0.2
455,319 - HMPREF1058_RS06530 0.54 +1.4
455,400 + HMPREF1058_RS06530 0.60 +0.7
455,406 - HMPREF1058_RS06530 0.60 +0.7

Or see this region's nucleotide sequence