Experiment: 2'-fucosyllactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00715 and HMPREF1058_RS00710 are separated by 40 nucleotides HMPREF1058_RS00710 and HMPREF1058_RS00705 are separated by 119 nucleotides HMPREF1058_RS00705 and HMPREF1058_RS00700 are separated by 36 nucleotides
HMPREF1058_RS00715: HMPREF1058_RS00715 - adenylate kinase, at 7,763 to 8,332
_RS00715
HMPREF1058_RS00710: HMPREF1058_RS00710 - hypoxanthine phosphoribosyltransferase, at 8,373 to 8,909
_RS00710
HMPREF1058_RS00705: HMPREF1058_RS00705 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 9,029 to 10,564
_RS00705
HMPREF1058_RS00700: HMPREF1058_RS00700 - DUF4831 family protein, at 10,601 to 11,650
_RS00700
Position (kb)
9
10
11 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 8.390 kb on - strand at 8.406 kb on - strand at 8.406 kb on - strand at 8.423 kb on - strand at 8.460 kb on - strand, within HMPREF1058_RS00710 at 8.474 kb on - strand, within HMPREF1058_RS00710 at 8.479 kb on - strand, within HMPREF1058_RS00710 at 8.479 kb on - strand, within HMPREF1058_RS00710 at 8.479 kb on - strand, within HMPREF1058_RS00710 at 8.523 kb on - strand, within HMPREF1058_RS00710 at 8.557 kb on - strand, within HMPREF1058_RS00710 at 8.601 kb on - strand, within HMPREF1058_RS00710 at 8.622 kb on - strand, within HMPREF1058_RS00710 at 8.634 kb on - strand, within HMPREF1058_RS00710 at 8.796 kb on - strand, within HMPREF1058_RS00710 at 8.806 kb on - strand, within HMPREF1058_RS00710 at 8.886 kb on - strand at 8.886 kb on - strand at 8.991 kb on + strand at 8.992 kb on - strand at 9.006 kb on - strand at 9.054 kb on + strand at 9.054 kb on + strand at 9.178 kb on - strand at 9.230 kb on - strand, within HMPREF1058_RS00705 at 9.255 kb on + strand, within HMPREF1058_RS00705 at 9.256 kb on - strand, within HMPREF1058_RS00705 at 9.256 kb on - strand, within HMPREF1058_RS00705 at 9.354 kb on + strand, within HMPREF1058_RS00705 at 9.355 kb on - strand, within HMPREF1058_RS00705 at 9.400 kb on - strand, within HMPREF1058_RS00705 at 9.467 kb on + strand, within HMPREF1058_RS00705 at 9.467 kb on + strand, within HMPREF1058_RS00705 at 9.469 kb on + strand, within HMPREF1058_RS00705 at 9.469 kb on + strand, within HMPREF1058_RS00705 at 9.473 kb on - strand, within HMPREF1058_RS00705 at 9.473 kb on - strand, within HMPREF1058_RS00705 at 9.493 kb on - strand, within HMPREF1058_RS00705 at 9.507 kb on + strand, within HMPREF1058_RS00705 at 9.539 kb on + strand, within HMPREF1058_RS00705 at 9.540 kb on - strand, within HMPREF1058_RS00705 at 9.540 kb on - strand, within HMPREF1058_RS00705 at 9.542 kb on - strand, within HMPREF1058_RS00705 at 9.542 kb on - strand, within HMPREF1058_RS00705 at 9.591 kb on + strand, within HMPREF1058_RS00705 at 9.595 kb on + strand, within HMPREF1058_RS00705 at 9.595 kb on + strand, within HMPREF1058_RS00705 at 9.596 kb on - strand, within HMPREF1058_RS00705 at 9.596 kb on - strand, within HMPREF1058_RS00705 at 9.596 kb on - strand, within HMPREF1058_RS00705 at 9.596 kb on - strand, within HMPREF1058_RS00705 at 9.698 kb on + strand, within HMPREF1058_RS00705 at 9.701 kb on + strand, within HMPREF1058_RS00705 at 9.701 kb on + strand, within HMPREF1058_RS00705 at 9.701 kb on + strand, within HMPREF1058_RS00705 at 9.701 kb on + strand, within HMPREF1058_RS00705 at 9.702 kb on - strand, within HMPREF1058_RS00705 at 9.702 kb on - strand, within HMPREF1058_RS00705 at 9.702 kb on - strand, within HMPREF1058_RS00705 at 9.702 kb on - strand, within HMPREF1058_RS00705 at 9.702 kb on - strand, within HMPREF1058_RS00705 at 9.704 kb on - strand, within HMPREF1058_RS00705 at 9.801 kb on - strand, within HMPREF1058_RS00705 at 9.877 kb on - strand, within HMPREF1058_RS00705 at 9.877 kb on - strand, within HMPREF1058_RS00705 at 9.939 kb on + strand, within HMPREF1058_RS00705 at 9.939 kb on + strand, within HMPREF1058_RS00705 at 9.939 kb on + strand, within HMPREF1058_RS00705 at 9.939 kb on + strand, within HMPREF1058_RS00705 at 9.939 kb on + strand, within HMPREF1058_RS00705 at 9.940 kb on - strand, within HMPREF1058_RS00705 at 9.950 kb on + strand, within HMPREF1058_RS00705 at 9.951 kb on - strand, within HMPREF1058_RS00705 at 10.050 kb on + strand, within HMPREF1058_RS00705 at 10.050 kb on + strand, within HMPREF1058_RS00705 at 10.051 kb on - strand, within HMPREF1058_RS00705 at 10.051 kb on - strand, within HMPREF1058_RS00705 at 10.182 kb on + strand, within HMPREF1058_RS00705 at 10.186 kb on + strand, within HMPREF1058_RS00705 at 10.187 kb on - strand, within HMPREF1058_RS00705 at 10.199 kb on - strand, within HMPREF1058_RS00705 at 10.202 kb on + strand, within HMPREF1058_RS00705 at 10.238 kb on + strand, within HMPREF1058_RS00705 at 10.238 kb on + strand, within HMPREF1058_RS00705 at 10.250 kb on + strand, within HMPREF1058_RS00705 at 10.250 kb on + strand, within HMPREF1058_RS00705 at 10.258 kb on + strand, within HMPREF1058_RS00705 at 10.258 kb on + strand, within HMPREF1058_RS00705 at 10.258 kb on + strand, within HMPREF1058_RS00705 at 10.260 kb on + strand, within HMPREF1058_RS00705 at 10.261 kb on - strand, within HMPREF1058_RS00705 at 10.394 kb on + strand, within HMPREF1058_RS00705 at 10.397 kb on - strand, within HMPREF1058_RS00705 at 10.431 kb on + strand at 10.476 kb on + strand at 10.498 kb on + strand at 10.562 kb on + strand at 10.566 kb on + strand at 10.569 kb on - strand at 10.581 kb on - strand at 10.581 kb on - strand at 10.581 kb on - strand at 10.583 kb on - strand at 10.595 kb on - strand at 10.666 kb on + strand at 10.666 kb on + strand at 10.670 kb on + strand at 10.671 kb on - strand at 10.671 kb on - strand at 10.672 kb on + strand at 10.703 kb on + strand at 10.706 kb on + strand, within HMPREF1058_RS00700 at 10.706 kb on + strand, within HMPREF1058_RS00700 at 10.714 kb on + strand, within HMPREF1058_RS00700 at 10.805 kb on - strand, within HMPREF1058_RS00700 at 10.812 kb on + strand, within HMPREF1058_RS00700 at 10.812 kb on + strand, within HMPREF1058_RS00700 at 10.849 kb on + strand, within HMPREF1058_RS00700 at 10.956 kb on + strand, within HMPREF1058_RS00700 at 10.956 kb on + strand, within HMPREF1058_RS00700 at 10.957 kb on - strand, within HMPREF1058_RS00700 at 11.119 kb on + strand, within HMPREF1058_RS00700 at 11.121 kb on + strand, within HMPREF1058_RS00700 at 11.121 kb on + strand, within HMPREF1058_RS00700 at 11.162 kb on + strand, within HMPREF1058_RS00700 at 11.164 kb on + strand, within HMPREF1058_RS00700 at 11.165 kb on - strand, within HMPREF1058_RS00700 at 11.341 kb on - strand, within HMPREF1058_RS00700 at 11.378 kb on + strand, within HMPREF1058_RS00700 at 11.382 kb on - strand, within HMPREF1058_RS00700 at 11.458 kb on + strand, within HMPREF1058_RS00700 at 11.458 kb on + strand, within HMPREF1058_RS00700 at 11.459 kb on - strand, within HMPREF1058_RS00700 at 11.536 kb on + strand, within HMPREF1058_RS00700
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-fucosyllactose 10 mg/mL (C) remove 8,390 - +0.0 8,406 - +0.9 8,406 - -0.9 8,423 - +0.9 8,460 - HMPREF1058_RS00710 0.16 -1.5 8,474 - HMPREF1058_RS00710 0.19 +2.7 8,479 - HMPREF1058_RS00710 0.20 -1.3 8,479 - HMPREF1058_RS00710 0.20 +1.7 8,479 - HMPREF1058_RS00710 0.20 +1.1 8,523 - HMPREF1058_RS00710 0.28 -0.8 8,557 - HMPREF1058_RS00710 0.34 +0.0 8,601 - HMPREF1058_RS00710 0.42 +0.7 8,622 - HMPREF1058_RS00710 0.46 +1.6 8,634 - HMPREF1058_RS00710 0.49 -1.0 8,796 - HMPREF1058_RS00710 0.79 -0.4 8,806 - HMPREF1058_RS00710 0.81 -0.1 8,886 - -0.8 8,886 - -0.6 8,991 + +2.8 8,992 - +0.5 9,006 - -0.2 9,054 + -0.9 9,054 + +1.2 9,178 - -1.1 9,230 - HMPREF1058_RS00705 0.13 +0.2 9,255 + HMPREF1058_RS00705 0.15 -0.1 9,256 - HMPREF1058_RS00705 0.15 -0.3 9,256 - HMPREF1058_RS00705 0.15 -0.4 9,354 + HMPREF1058_RS00705 0.21 -0.5 9,355 - HMPREF1058_RS00705 0.21 +0.8 9,400 - HMPREF1058_RS00705 0.24 +2.3 9,467 + HMPREF1058_RS00705 0.29 +0.7 9,467 + HMPREF1058_RS00705 0.29 +3.7 9,469 + HMPREF1058_RS00705 0.29 -0.4 9,469 + HMPREF1058_RS00705 0.29 -0.5 9,473 - HMPREF1058_RS00705 0.29 -0.5 9,473 - HMPREF1058_RS00705 0.29 +1.3 9,493 - HMPREF1058_RS00705 0.30 +1.0 9,507 + HMPREF1058_RS00705 0.31 +1.3 9,539 + HMPREF1058_RS00705 0.33 -0.9 9,540 - HMPREF1058_RS00705 0.33 -1.1 9,540 - HMPREF1058_RS00705 0.33 +2.2 9,542 - HMPREF1058_RS00705 0.33 +0.4 9,542 - HMPREF1058_RS00705 0.33 +1.6 9,591 + HMPREF1058_RS00705 0.37 +2.0 9,595 + HMPREF1058_RS00705 0.37 -0.3 9,595 + HMPREF1058_RS00705 0.37 +0.3 9,596 - HMPREF1058_RS00705 0.37 +0.7 9,596 - HMPREF1058_RS00705 0.37 +0.4 9,596 - HMPREF1058_RS00705 0.37 +1.5 9,596 - HMPREF1058_RS00705 0.37 -0.7 9,698 + HMPREF1058_RS00705 0.44 +0.2 9,701 + HMPREF1058_RS00705 0.44 +0.1 9,701 + HMPREF1058_RS00705 0.44 -0.1 9,701 + HMPREF1058_RS00705 0.44 +2.1 9,701 + HMPREF1058_RS00705 0.44 -1.4 9,702 - HMPREF1058_RS00705 0.44 +0.5 9,702 - HMPREF1058_RS00705 0.44 -0.7 9,702 - HMPREF1058_RS00705 0.44 +1.2 9,702 - HMPREF1058_RS00705 0.44 -0.5 9,702 - HMPREF1058_RS00705 0.44 +1.1 9,704 - HMPREF1058_RS00705 0.44 -0.7 9,801 - HMPREF1058_RS00705 0.50 +1.5 9,877 - HMPREF1058_RS00705 0.55 -2.5 9,877 - HMPREF1058_RS00705 0.55 +2.5 9,939 + HMPREF1058_RS00705 0.59 +0.4 9,939 + HMPREF1058_RS00705 0.59 +2.5 9,939 + HMPREF1058_RS00705 0.59 -1.9 9,939 + HMPREF1058_RS00705 0.59 +2.6 9,939 + HMPREF1058_RS00705 0.59 -0.3 9,940 - HMPREF1058_RS00705 0.59 -1.1 9,950 + HMPREF1058_RS00705 0.60 +1.7 9,951 - HMPREF1058_RS00705 0.60 -0.1 10,050 + HMPREF1058_RS00705 0.66 +0.9 10,050 + HMPREF1058_RS00705 0.66 +0.5 10,051 - HMPREF1058_RS00705 0.67 +0.6 10,051 - HMPREF1058_RS00705 0.67 +2.4 10,182 + HMPREF1058_RS00705 0.75 +0.7 10,186 + HMPREF1058_RS00705 0.75 -0.6 10,187 - HMPREF1058_RS00705 0.75 +3.6 10,199 - HMPREF1058_RS00705 0.76 +1.8 10,202 + HMPREF1058_RS00705 0.76 -0.2 10,238 + HMPREF1058_RS00705 0.79 +1.1 10,238 + HMPREF1058_RS00705 0.79 -0.4 10,250 + HMPREF1058_RS00705 0.79 +0.0 10,250 + HMPREF1058_RS00705 0.79 +0.3 10,258 + HMPREF1058_RS00705 0.80 +1.2 10,258 + HMPREF1058_RS00705 0.80 +0.3 10,258 + HMPREF1058_RS00705 0.80 +1.2 10,260 + HMPREF1058_RS00705 0.80 -0.1 10,261 - HMPREF1058_RS00705 0.80 +0.4 10,394 + HMPREF1058_RS00705 0.89 -0.2 10,397 - HMPREF1058_RS00705 0.89 -1.0 10,431 + +0.7 10,476 + -1.0 10,498 + +0.3 10,562 + +0.6 10,566 + -2.1 10,569 - -1.0 10,581 - -1.3 10,581 - -1.1 10,581 - -2.9 10,583 - -2.3 10,595 - +0.3 10,666 + +0.4 10,666 + +0.2 10,670 + -1.2 10,671 - +1.2 10,671 - -0.2 10,672 + -1.7 10,703 + -1.9 10,706 + HMPREF1058_RS00700 0.10 -0.7 10,706 + HMPREF1058_RS00700 0.10 -1.6 10,714 + HMPREF1058_RS00700 0.11 +1.9 10,805 - HMPREF1058_RS00700 0.19 -1.3 10,812 + HMPREF1058_RS00700 0.20 -1.2 10,812 + HMPREF1058_RS00700 0.20 +1.5 10,849 + HMPREF1058_RS00700 0.24 +2.2 10,956 + HMPREF1058_RS00700 0.34 -1.4 10,956 + HMPREF1058_RS00700 0.34 -0.0 10,957 - HMPREF1058_RS00700 0.34 -2.9 11,119 + HMPREF1058_RS00700 0.49 -0.3 11,121 + HMPREF1058_RS00700 0.50 -1.3 11,121 + HMPREF1058_RS00700 0.50 +0.5 11,162 + HMPREF1058_RS00700 0.53 -3.2 11,164 + HMPREF1058_RS00700 0.54 +0.0 11,165 - HMPREF1058_RS00700 0.54 -1.6 11,341 - HMPREF1058_RS00700 0.70 +0.4 11,378 + HMPREF1058_RS00700 0.74 -2.0 11,382 - HMPREF1058_RS00700 0.74 -1.8 11,458 + HMPREF1058_RS00700 0.82 +1.1 11,458 + HMPREF1058_RS00700 0.82 -0.4 11,459 - HMPREF1058_RS00700 0.82 +0.6 11,536 + HMPREF1058_RS00700 0.89 -0.6
Or see this region's nucleotide sequence