Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS00705

Experiment: 2'-fucosyllactose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2'-fucosyllactose 10 mg/mL (C)
8,390	-				+0.0
8,406	-				+0.9
8,406	-				-0.9
8,423	-				+0.9
8,460	-		HMPREF1058_RS00710	0.16	-1.5
8,474	-		HMPREF1058_RS00710	0.19	+2.7
8,479	-		HMPREF1058_RS00710	0.20	-1.3
8,479	-		HMPREF1058_RS00710	0.20	+1.7
8,479	-		HMPREF1058_RS00710	0.20	+1.1
8,523	-		HMPREF1058_RS00710	0.28	-0.8
8,557	-		HMPREF1058_RS00710	0.34	+0.0
8,601	-		HMPREF1058_RS00710	0.42	+0.7
8,622	-		HMPREF1058_RS00710	0.46	+1.6
8,634	-		HMPREF1058_RS00710	0.49	-1.0
8,796	-		HMPREF1058_RS00710	0.79	-0.4
8,806	-		HMPREF1058_RS00710	0.81	-0.1
8,886	-				-0.8
8,886	-				-0.6
8,991	+				+2.8
8,992	-				+0.5
9,006	-				-0.2
9,054	+				-0.9
9,054	+				+1.2
9,178	-				-1.1
9,230	-		HMPREF1058_RS00705	0.13	+0.2
9,255	+		HMPREF1058_RS00705	0.15	-0.1
9,256	-		HMPREF1058_RS00705	0.15	-0.3
9,256	-		HMPREF1058_RS00705	0.15	-0.4
9,354	+		HMPREF1058_RS00705	0.21	-0.5
9,355	-		HMPREF1058_RS00705	0.21	+0.8
9,400	-		HMPREF1058_RS00705	0.24	+2.3
9,467	+		HMPREF1058_RS00705	0.29	+0.7
9,467	+		HMPREF1058_RS00705	0.29	+3.7
9,469	+		HMPREF1058_RS00705	0.29	-0.4
9,469	+		HMPREF1058_RS00705	0.29	-0.5
9,473	-		HMPREF1058_RS00705	0.29	-0.5
9,473	-		HMPREF1058_RS00705	0.29	+1.3
9,493	-		HMPREF1058_RS00705	0.30	+1.0
9,507	+		HMPREF1058_RS00705	0.31	+1.3
9,539	+		HMPREF1058_RS00705	0.33	-0.9
9,540	-		HMPREF1058_RS00705	0.33	-1.1
9,540	-		HMPREF1058_RS00705	0.33	+2.2
9,542	-		HMPREF1058_RS00705	0.33	+0.4
9,542	-		HMPREF1058_RS00705	0.33	+1.6
9,591	+		HMPREF1058_RS00705	0.37	+2.0
9,595	+		HMPREF1058_RS00705	0.37	-0.3
9,595	+		HMPREF1058_RS00705	0.37	+0.3
9,596	-		HMPREF1058_RS00705	0.37	+0.7
9,596	-		HMPREF1058_RS00705	0.37	+0.4
9,596	-		HMPREF1058_RS00705	0.37	+1.5
9,596	-		HMPREF1058_RS00705	0.37	-0.7
9,698	+		HMPREF1058_RS00705	0.44	+0.2
9,701	+		HMPREF1058_RS00705	0.44	+0.1
9,701	+		HMPREF1058_RS00705	0.44	-0.1
9,701	+		HMPREF1058_RS00705	0.44	+2.1
9,701	+		HMPREF1058_RS00705	0.44	-1.4
9,702	-		HMPREF1058_RS00705	0.44	+0.5
9,702	-		HMPREF1058_RS00705	0.44	-0.7
9,702	-		HMPREF1058_RS00705	0.44	+1.2
9,702	-		HMPREF1058_RS00705	0.44	-0.5
9,702	-		HMPREF1058_RS00705	0.44	+1.1
9,704	-		HMPREF1058_RS00705	0.44	-0.7
9,801	-		HMPREF1058_RS00705	0.50	+1.5
9,877	-		HMPREF1058_RS00705	0.55	-2.5
9,877	-		HMPREF1058_RS00705	0.55	+2.5
9,939	+		HMPREF1058_RS00705	0.59	+0.4
9,939	+		HMPREF1058_RS00705	0.59	+2.5
9,939	+		HMPREF1058_RS00705	0.59	-1.9
9,939	+		HMPREF1058_RS00705	0.59	+2.6
9,939	+		HMPREF1058_RS00705	0.59	-0.3
9,940	-		HMPREF1058_RS00705	0.59	-1.1
9,950	+		HMPREF1058_RS00705	0.60	+1.7
9,951	-		HMPREF1058_RS00705	0.60	-0.1
10,050	+		HMPREF1058_RS00705	0.66	+0.9
10,050	+		HMPREF1058_RS00705	0.66	+0.5
10,051	-		HMPREF1058_RS00705	0.67	+0.6
10,051	-		HMPREF1058_RS00705	0.67	+2.4
10,182	+		HMPREF1058_RS00705	0.75	+0.7
10,186	+		HMPREF1058_RS00705	0.75	-0.6
10,187	-		HMPREF1058_RS00705	0.75	+3.6
10,199	-		HMPREF1058_RS00705	0.76	+1.8
10,202	+		HMPREF1058_RS00705	0.76	-0.2
10,238	+		HMPREF1058_RS00705	0.79	+1.1
10,238	+		HMPREF1058_RS00705	0.79	-0.4
10,250	+		HMPREF1058_RS00705	0.79	+0.0
10,250	+		HMPREF1058_RS00705	0.79	+0.3
10,258	+		HMPREF1058_RS00705	0.80	+1.2
10,258	+		HMPREF1058_RS00705	0.80	+0.3
10,258	+		HMPREF1058_RS00705	0.80	+1.2
10,260	+		HMPREF1058_RS00705	0.80	-0.1
10,261	-		HMPREF1058_RS00705	0.80	+0.4
10,394	+		HMPREF1058_RS00705	0.89	-0.2
10,397	-		HMPREF1058_RS00705	0.89	-1.0
10,431	+				+0.7
10,476	+				-1.0
10,498	+				+0.3
10,562	+				+0.6
10,566	+				-2.1
10,569	-				-1.0
10,581	-				-1.3
10,581	-				-1.1
10,581	-				-2.9
10,583	-				-2.3
10,595	-				+0.3
10,666	+				+0.4
10,666	+				+0.2
10,670	+				-1.2
10,671	-				+1.2
10,671	-				-0.2
10,672	+				-1.7
10,703	+				-1.9
10,706	+		HMPREF1058_RS00700	0.10	-0.7
10,706	+		HMPREF1058_RS00700	0.10	-1.6
10,714	+		HMPREF1058_RS00700	0.11	+1.9
10,805	-		HMPREF1058_RS00700	0.19	-1.3
10,812	+		HMPREF1058_RS00700	0.20	-1.2
10,812	+		HMPREF1058_RS00700	0.20	+1.5
10,849	+		HMPREF1058_RS00700	0.24	+2.2
10,956	+		HMPREF1058_RS00700	0.34	-1.4
10,956	+		HMPREF1058_RS00700	0.34	-0.0
10,957	-		HMPREF1058_RS00700	0.34	-2.9
11,119	+		HMPREF1058_RS00700	0.49	-0.3
11,121	+		HMPREF1058_RS00700	0.50	-1.3
11,121	+		HMPREF1058_RS00700	0.50	+0.5
11,162	+		HMPREF1058_RS00700	0.53	-3.2
11,164	+		HMPREF1058_RS00700	0.54	+0.0
11,165	-		HMPREF1058_RS00700	0.54	-1.6
11,341	-		HMPREF1058_RS00700	0.70	+0.4
11,378	+		HMPREF1058_RS00700	0.74	-2.0
11,382	-		HMPREF1058_RS00700	0.74	-1.8
11,458	+		HMPREF1058_RS00700	0.82	+1.1
11,458	+		HMPREF1058_RS00700	0.82	-0.4
11,459	-		HMPREF1058_RS00700	0.82	+0.6
11,536	+		HMPREF1058_RS00700	0.89	-0.6