Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17470

Experiment: Lacto-N-tetraose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17475 and HMPREF1058_RS17470 are separated by 267 nucleotidesHMPREF1058_RS17470 and HMPREF1058_RS17465 are separated by 90 nucleotides HMPREF1058_RS17475: HMPREF1058_RS17475 - TonB-dependent receptor, at 428,082 to 431,201 _RS17475 HMPREF1058_RS17470: HMPREF1058_RS17470 - transporter, at 431,469 to 433,067 _RS17470 HMPREF1058_RS17465: HMPREF1058_RS17465 - beta-galactosidase, at 433,158 to 437,438 _RS17465 Position (kb) 431 432 433 434Strain fitness (log2 ratio) -2 -1 0 1 2at 430.479 kb on + strand, within HMPREF1058_RS17475at 430.480 kb on - strand, within HMPREF1058_RS17475at 430.524 kb on + strand, within HMPREF1058_RS17475at 430.571 kb on - strand, within HMPREF1058_RS17475at 430.571 kb on - strand, within HMPREF1058_RS17475at 430.596 kb on - strand, within HMPREF1058_RS17475at 430.674 kb on - strand, within HMPREF1058_RS17475at 430.724 kb on + strand, within HMPREF1058_RS17475at 430.754 kb on + strand, within HMPREF1058_RS17475at 430.769 kb on + strand, within HMPREF1058_RS17475at 430.837 kb on - strand, within HMPREF1058_RS17475at 430.885 kb on + strand, within HMPREF1058_RS17475at 430.894 kb on - strandat 431.047 kb on - strandat 431.146 kb on - strandat 431.213 kb on + strandat 431.214 kb on - strandat 431.214 kb on - strandat 431.224 kb on - strandat 431.224 kb on - strandat 431.229 kb on - strandat 431.244 kb on - strandat 431.288 kb on - strandat 431.288 kb on - strandat 431.325 kb on + strandat 431.426 kb on + strandat 431.427 kb on - strandat 431.430 kb on + strandat 431.467 kb on + strandat 431.496 kb on + strandat 431.497 kb on - strandat 431.542 kb on + strandat 431.543 kb on - strandat 431.559 kb on - strandat 431.562 kb on - strandat 431.564 kb on + strandat 431.565 kb on - strandat 431.565 kb on - strandat 431.568 kb on + strandat 431.568 kb on + strandat 431.815 kb on - strand, within HMPREF1058_RS17470at 431.840 kb on + strand, within HMPREF1058_RS17470at 431.840 kb on + strand, within HMPREF1058_RS17470at 431.841 kb on - strand, within HMPREF1058_RS17470at 431.852 kb on + strand, within HMPREF1058_RS17470at 431.852 kb on + strand, within HMPREF1058_RS17470at 431.853 kb on - strand, within HMPREF1058_RS17470at 431.853 kb on - strand, within HMPREF1058_RS17470at 431.949 kb on - strand, within HMPREF1058_RS17470at 431.967 kb on + strand, within HMPREF1058_RS17470at 431.968 kb on - strand, within HMPREF1058_RS17470at 431.976 kb on + strand, within HMPREF1058_RS17470at 431.977 kb on - strand, within HMPREF1058_RS17470at 431.988 kb on - strand, within HMPREF1058_RS17470at 432.213 kb on - strandat 432.213 kb on - strand, within HMPREF1058_RS17470at 432.452 kb on + strand, within HMPREF1058_RS17470at 432.452 kb on + strand, within HMPREF1058_RS17470at 432.659 kb on + strand, within HMPREF1058_RS17470at 432.667 kb on - strand, within HMPREF1058_RS17470at 432.668 kb on + strand, within HMPREF1058_RS17470at 432.668 kb on + strand, within HMPREF1058_RS17470at 432.668 kb on + strand, within HMPREF1058_RS17470at 432.749 kb on - strand, within HMPREF1058_RS17470at 432.788 kb on + strand, within HMPREF1058_RS17470at 432.795 kb on - strand, within HMPREF1058_RS17470at 433.005 kb on - strandat 433.138 kb on - strandat 433.159 kb on + strandat 433.220 kb on + strandat 433.222 kb on + strandat 433.240 kb on + strandat 433.241 kb on - strandat 433.433 kb on + strandat 433.493 kb on + strandat 433.512 kb on - strandat 433.528 kb on + strandat 433.528 kb on + strandat 433.529 kb on - strandat 433.650 kb on - strand, within HMPREF1058_RS17465at 433.857 kb on - strand, within HMPREF1058_RS17465at 433.882 kb on - strand, within HMPREF1058_RS17465

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Per-strain Table

Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C)
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430,479 + HMPREF1058_RS17475 0.77 -1.8
430,480 - HMPREF1058_RS17475 0.77 -1.1
430,524 + HMPREF1058_RS17475 0.78 +0.5
430,571 - HMPREF1058_RS17475 0.80 -1.8
430,571 - HMPREF1058_RS17475 0.80 +0.8
430,596 - HMPREF1058_RS17475 0.81 -0.6
430,674 - HMPREF1058_RS17475 0.83 +1.3
430,724 + HMPREF1058_RS17475 0.85 +1.0
430,754 + HMPREF1058_RS17475 0.86 -0.8
430,769 + HMPREF1058_RS17475 0.86 -0.4
430,837 - HMPREF1058_RS17475 0.88 +0.4
430,885 + HMPREF1058_RS17475 0.90 -1.2
430,894 - -0.5
431,047 - +1.0
431,146 - +2.4
431,213 + -1.4
431,214 - +1.0
431,214 - +1.8
431,224 - +0.3
431,224 - -0.6
431,229 - +0.5
431,244 - +0.1
431,288 - +2.1
431,288 - +1.3
431,325 + -0.6
431,426 + +0.1
431,427 - +1.7
431,430 + -1.2
431,467 + +0.7
431,496 + -0.7
431,497 - -2.0
431,542 + +0.3
431,543 - -1.4
431,559 - -0.6
431,562 - -0.1
431,564 + -0.1
431,565 - -0.9
431,565 - -0.1
431,568 + +0.4
431,568 + -0.0
431,815 - HMPREF1058_RS17470 0.22 -1.3
431,840 + HMPREF1058_RS17470 0.23 +0.6
431,840 + HMPREF1058_RS17470 0.23 -0.8
431,841 - HMPREF1058_RS17470 0.23 -1.0
431,852 + HMPREF1058_RS17470 0.24 -1.6
431,852 + HMPREF1058_RS17470 0.24 -0.2
431,853 - HMPREF1058_RS17470 0.24 -1.1
431,853 - HMPREF1058_RS17470 0.24 -0.0
431,949 - HMPREF1058_RS17470 0.30 +0.3
431,967 + HMPREF1058_RS17470 0.31 -1.1
431,968 - HMPREF1058_RS17470 0.31 -1.9
431,976 + HMPREF1058_RS17470 0.32 -1.2
431,977 - HMPREF1058_RS17470 0.32 -0.6
431,988 - HMPREF1058_RS17470 0.32 -0.8
432,213 - +0.4
432,213 - HMPREF1058_RS17470 0.47 -0.4
432,452 + HMPREF1058_RS17470 0.61 -1.0
432,452 + HMPREF1058_RS17470 0.61 -0.7
432,659 + HMPREF1058_RS17470 0.74 -0.1
432,667 - HMPREF1058_RS17470 0.75 -1.6
432,668 + HMPREF1058_RS17470 0.75 -1.9
432,668 + HMPREF1058_RS17470 0.75 -1.1
432,668 + HMPREF1058_RS17470 0.75 -1.8
432,749 - HMPREF1058_RS17470 0.80 +0.3
432,788 + HMPREF1058_RS17470 0.82 -1.5
432,795 - HMPREF1058_RS17470 0.83 -0.3
433,005 - -0.3
433,138 - +0.0
433,159 + -0.5
433,220 + -0.7
433,222 + +0.0
433,240 + -0.6
433,241 - -1.1
433,433 + -0.4
433,493 + -0.2
433,512 - +0.7
433,528 + +1.1
433,528 + -1.1
433,529 - +1.7
433,650 - HMPREF1058_RS17465 0.11 -0.6
433,857 - HMPREF1058_RS17465 0.16 +0.2
433,882 - HMPREF1058_RS17465 0.17 -0.0

Or see this region's nucleotide sequence