Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS16805

Experiment: Promitor 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS16810 and HMPREF1058_RS16805 are separated by 362 nucleotidesHMPREF1058_RS16805 and HMPREF1058_RS16800 are separated by 147 nucleotides HMPREF1058_RS16810: HMPREF1058_RS16810 - hypothetical protein, at 590,504 to 590,878 _RS16810 HMPREF1058_RS16805: HMPREF1058_RS16805 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 591,241 to 591,819 _RS16805 HMPREF1058_RS16800: HMPREF1058_RS16800 - RagB/SusD family nutrient uptake outer membrane protein, at 591,967 to 593,409 _RS16800 Position (kb) 591 592Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 590.261 kb on + strandat 590.267 kb on - strandat 590.270 kb on - strandat 590.273 kb on - strandat 590.279 kb on - strandat 590.279 kb on - strandat 590.426 kb on - strandat 590.506 kb on - strandat 590.506 kb on - strandat 590.529 kb on + strandat 590.529 kb on + strandat 590.530 kb on - strandat 590.530 kb on - strandat 590.530 kb on - strandat 590.557 kb on + strand, within HMPREF1058_RS16810at 590.558 kb on - strand, within HMPREF1058_RS16810at 590.558 kb on - strand, within HMPREF1058_RS16810at 590.578 kb on - strand, within HMPREF1058_RS16810at 590.578 kb on - strand, within HMPREF1058_RS16810at 590.605 kb on + strand, within HMPREF1058_RS16810at 590.606 kb on - strand, within HMPREF1058_RS16810at 590.717 kb on - strand, within HMPREF1058_RS16810at 590.786 kb on + strand, within HMPREF1058_RS16810at 590.787 kb on - strand, within HMPREF1058_RS16810at 590.830 kb on + strand, within HMPREF1058_RS16810at 590.843 kb on + strandat 590.867 kb on + strandat 590.919 kb on - strandat 590.926 kb on - strandat 590.936 kb on + strandat 590.937 kb on - strandat 590.947 kb on + strandat 590.950 kb on + strandat 590.951 kb on - strandat 591.112 kb on + strandat 591.115 kb on - strandat 591.141 kb on + strandat 591.150 kb on - strandat 591.219 kb on + strandat 591.232 kb on + strandat 591.268 kb on + strandat 591.268 kb on + strandat 591.269 kb on - strandat 591.277 kb on + strandat 591.324 kb on - strand, within HMPREF1058_RS16805at 591.387 kb on - strand, within HMPREF1058_RS16805at 591.454 kb on - strand, within HMPREF1058_RS16805at 591.480 kb on + strand, within HMPREF1058_RS16805at 591.480 kb on + strand, within HMPREF1058_RS16805at 591.486 kb on + strand, within HMPREF1058_RS16805at 591.523 kb on - strand, within HMPREF1058_RS16805at 591.575 kb on - strand, within HMPREF1058_RS16805at 591.584 kb on + strand, within HMPREF1058_RS16805at 591.640 kb on - strand, within HMPREF1058_RS16805at 591.668 kb on + strand, within HMPREF1058_RS16805at 591.710 kb on + strand, within HMPREF1058_RS16805at 591.781 kb on - strandat 591.818 kb on - strandat 591.888 kb on + strandat 591.935 kb on - strandat 591.940 kb on - strandat 591.968 kb on + strandat 592.066 kb on - strandat 592.066 kb on - strandat 592.068 kb on - strandat 592.068 kb on - strandat 592.106 kb on + strandat 592.132 kb on - strand, within HMPREF1058_RS16800at 592.134 kb on - strand, within HMPREF1058_RS16800at 592.142 kb on + strand, within HMPREF1058_RS16800at 592.142 kb on + strand, within HMPREF1058_RS16800at 592.143 kb on - strand, within HMPREF1058_RS16800at 592.143 kb on - strand, within HMPREF1058_RS16800at 592.144 kb on + strand, within HMPREF1058_RS16800at 592.144 kb on + strand, within HMPREF1058_RS16800at 592.144 kb on + strand, within HMPREF1058_RS16800at 592.144 kb on + strand, within HMPREF1058_RS16800at 592.145 kb on - strand, within HMPREF1058_RS16800at 592.164 kb on - strand, within HMPREF1058_RS16800at 592.177 kb on - strand, within HMPREF1058_RS16800at 592.248 kb on + strand, within HMPREF1058_RS16800at 592.267 kb on - strandat 592.290 kb on + strand, within HMPREF1058_RS16800at 592.291 kb on - strand, within HMPREF1058_RS16800at 592.335 kb on + strand, within HMPREF1058_RS16800at 592.335 kb on + strand, within HMPREF1058_RS16800at 592.336 kb on - strand, within HMPREF1058_RS16800at 592.341 kb on - strand, within HMPREF1058_RS16800at 592.360 kb on - strand, within HMPREF1058_RS16800at 592.369 kb on - strand, within HMPREF1058_RS16800at 592.386 kb on - strandat 592.541 kb on + strand, within HMPREF1058_RS16800at 592.547 kb on + strand, within HMPREF1058_RS16800at 592.548 kb on - strand, within HMPREF1058_RS16800at 592.548 kb on - strand, within HMPREF1058_RS16800at 592.554 kb on - strand, within HMPREF1058_RS16800at 592.566 kb on + strand, within HMPREF1058_RS16800at 592.600 kb on - strand, within HMPREF1058_RS16800at 592.649 kb on - strand, within HMPREF1058_RS16800at 592.712 kb on + strand, within HMPREF1058_RS16800at 592.730 kb on + strand, within HMPREF1058_RS16800at 592.730 kb on + strand, within HMPREF1058_RS16800at 592.730 kb on + strand, within HMPREF1058_RS16800at 592.746 kb on + strand, within HMPREF1058_RS16800at 592.746 kb on + strand, within HMPREF1058_RS16800at 592.747 kb on - strand, within HMPREF1058_RS16800at 592.792 kb on + strand, within HMPREF1058_RS16800

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Per-strain Table

Position Strand Gene LocusTag Fraction Promitor 10 mg/mL (C)
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590,261 + -2.4
590,267 - +0.0
590,270 - +0.3
590,273 - +0.6
590,279 - +0.8
590,279 - +0.2
590,426 - -0.5
590,506 - +0.2
590,506 - -1.5
590,529 + -0.3
590,529 + -1.5
590,530 - +0.6
590,530 - -1.6
590,530 - +0.8
590,557 + HMPREF1058_RS16810 0.14 +0.1
590,558 - HMPREF1058_RS16810 0.14 -0.1
590,558 - HMPREF1058_RS16810 0.14 -0.6
590,578 - HMPREF1058_RS16810 0.20 +0.5
590,578 - HMPREF1058_RS16810 0.20 +0.1
590,605 + HMPREF1058_RS16810 0.27 -0.6
590,606 - HMPREF1058_RS16810 0.27 -0.4
590,717 - HMPREF1058_RS16810 0.57 +0.7
590,786 + HMPREF1058_RS16810 0.75 -0.8
590,787 - HMPREF1058_RS16810 0.75 +0.9
590,830 + HMPREF1058_RS16810 0.87 +0.6
590,843 + -1.2
590,867 + -1.5
590,919 - -1.9
590,926 - -0.9
590,936 + +0.1
590,937 - -0.4
590,947 + -0.4
590,950 + +0.1
590,951 - -0.9
591,112 + +0.2
591,115 - +0.3
591,141 + -0.6
591,150 - +1.3
591,219 + +0.1
591,232 + -0.9
591,268 + +0.9
591,268 + +0.5
591,269 - +3.8
591,277 + +1.4
591,324 - HMPREF1058_RS16805 0.14 +0.1
591,387 - HMPREF1058_RS16805 0.25 +0.3
591,454 - HMPREF1058_RS16805 0.37 -1.4
591,480 + HMPREF1058_RS16805 0.41 +2.6
591,480 + HMPREF1058_RS16805 0.41 +3.1
591,486 + HMPREF1058_RS16805 0.42 +2.9
591,523 - HMPREF1058_RS16805 0.49 +2.3
591,575 - HMPREF1058_RS16805 0.58 +5.0
591,584 + HMPREF1058_RS16805 0.59 -0.4
591,640 - HMPREF1058_RS16805 0.69 +0.4
591,668 + HMPREF1058_RS16805 0.74 +1.5
591,710 + HMPREF1058_RS16805 0.81 +2.0
591,781 - +1.9
591,818 - -2.8
591,888 + -1.4
591,935 - -0.2
591,940 - +0.2
591,968 + +0.1
592,066 - -0.2
592,066 - +0.1
592,068 - -1.5
592,068 - +0.2
592,106 + -0.0
592,132 - HMPREF1058_RS16800 0.11 -0.1
592,134 - HMPREF1058_RS16800 0.12 +2.1
592,142 + HMPREF1058_RS16800 0.12 -1.8
592,142 + HMPREF1058_RS16800 0.12 +0.1
592,143 - HMPREF1058_RS16800 0.12 +0.2
592,143 - HMPREF1058_RS16800 0.12 -0.2
592,144 + HMPREF1058_RS16800 0.12 +0.1
592,144 + HMPREF1058_RS16800 0.12 -0.4
592,144 + HMPREF1058_RS16800 0.12 -0.7
592,144 + HMPREF1058_RS16800 0.12 +0.6
592,145 - HMPREF1058_RS16800 0.12 +0.1
592,164 - HMPREF1058_RS16800 0.14 -0.8
592,177 - HMPREF1058_RS16800 0.15 +0.2
592,248 + HMPREF1058_RS16800 0.19 -1.8
592,267 - +0.3
592,290 + HMPREF1058_RS16800 0.22 -0.1
592,291 - HMPREF1058_RS16800 0.22 +1.2
592,335 + HMPREF1058_RS16800 0.26 +0.3
592,335 + HMPREF1058_RS16800 0.26 -1.4
592,336 - HMPREF1058_RS16800 0.26 +0.8
592,341 - HMPREF1058_RS16800 0.26 +0.0
592,360 - HMPREF1058_RS16800 0.27 -0.1
592,369 - HMPREF1058_RS16800 0.28 -0.8
592,386 - +0.7
592,541 + HMPREF1058_RS16800 0.40 +0.7
592,547 + HMPREF1058_RS16800 0.40 -1.2
592,548 - HMPREF1058_RS16800 0.40 +1.4
592,548 - HMPREF1058_RS16800 0.40 +0.2
592,554 - HMPREF1058_RS16800 0.41 +0.3
592,566 + HMPREF1058_RS16800 0.42 +0.8
592,600 - HMPREF1058_RS16800 0.44 -0.5
592,649 - HMPREF1058_RS16800 0.47 -1.7
592,712 + HMPREF1058_RS16800 0.52 +1.0
592,730 + HMPREF1058_RS16800 0.53 -0.1
592,730 + HMPREF1058_RS16800 0.53 +1.2
592,730 + HMPREF1058_RS16800 0.53 -0.6
592,746 + HMPREF1058_RS16800 0.54 +1.3
592,746 + HMPREF1058_RS16800 0.54 +0.3
592,747 - HMPREF1058_RS16800 0.54 -0.2
592,792 + HMPREF1058_RS16800 0.57 +1.6

Or see this region's nucleotide sequence