Experiment: Promitor 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16810 and HMPREF1058_RS16805 are separated by 362 nucleotides HMPREF1058_RS16805 and HMPREF1058_RS16800 are separated by 147 nucleotides
HMPREF1058_RS16810: HMPREF1058_RS16810 - hypothetical protein, at 590,504 to 590,878
_RS16810
HMPREF1058_RS16805: HMPREF1058_RS16805 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 591,241 to 591,819
_RS16805
HMPREF1058_RS16800: HMPREF1058_RS16800 - RagB/SusD family nutrient uptake outer membrane protein, at 591,967 to 593,409
_RS16800
Position (kb)
591
592 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 590.261 kb on + strand at 590.267 kb on - strand at 590.270 kb on - strand at 590.273 kb on - strand at 590.279 kb on - strand at 590.279 kb on - strand at 590.426 kb on - strand at 590.506 kb on - strand at 590.506 kb on - strand at 590.529 kb on + strand at 590.529 kb on + strand at 590.530 kb on - strand at 590.530 kb on - strand at 590.530 kb on - strand at 590.557 kb on + strand, within HMPREF1058_RS16810 at 590.558 kb on - strand, within HMPREF1058_RS16810 at 590.558 kb on - strand, within HMPREF1058_RS16810 at 590.578 kb on - strand, within HMPREF1058_RS16810 at 590.578 kb on - strand, within HMPREF1058_RS16810 at 590.605 kb on + strand, within HMPREF1058_RS16810 at 590.606 kb on - strand, within HMPREF1058_RS16810 at 590.717 kb on - strand, within HMPREF1058_RS16810 at 590.786 kb on + strand, within HMPREF1058_RS16810 at 590.787 kb on - strand, within HMPREF1058_RS16810 at 590.830 kb on + strand, within HMPREF1058_RS16810 at 590.843 kb on + strand at 590.867 kb on + strand at 590.919 kb on - strand at 590.926 kb on - strand at 590.936 kb on + strand at 590.937 kb on - strand at 590.947 kb on + strand at 590.950 kb on + strand at 590.951 kb on - strand at 591.112 kb on + strand at 591.115 kb on - strand at 591.141 kb on + strand at 591.150 kb on - strand at 591.219 kb on + strand at 591.232 kb on + strand at 591.268 kb on + strand at 591.268 kb on + strand at 591.269 kb on - strand at 591.277 kb on + strand at 591.324 kb on - strand, within HMPREF1058_RS16805 at 591.387 kb on - strand, within HMPREF1058_RS16805 at 591.454 kb on - strand, within HMPREF1058_RS16805 at 591.480 kb on + strand, within HMPREF1058_RS16805 at 591.480 kb on + strand, within HMPREF1058_RS16805 at 591.486 kb on + strand, within HMPREF1058_RS16805 at 591.523 kb on - strand, within HMPREF1058_RS16805 at 591.575 kb on - strand, within HMPREF1058_RS16805 at 591.584 kb on + strand, within HMPREF1058_RS16805 at 591.640 kb on - strand, within HMPREF1058_RS16805 at 591.668 kb on + strand, within HMPREF1058_RS16805 at 591.710 kb on + strand, within HMPREF1058_RS16805 at 591.781 kb on - strand at 591.818 kb on - strand at 591.888 kb on + strand at 591.935 kb on - strand at 591.940 kb on - strand at 591.968 kb on + strand at 592.066 kb on - strand at 592.066 kb on - strand at 592.068 kb on - strand at 592.068 kb on - strand at 592.106 kb on + strand at 592.132 kb on - strand, within HMPREF1058_RS16800 at 592.134 kb on - strand, within HMPREF1058_RS16800 at 592.142 kb on + strand, within HMPREF1058_RS16800 at 592.142 kb on + strand, within HMPREF1058_RS16800 at 592.143 kb on - strand, within HMPREF1058_RS16800 at 592.143 kb on - strand, within HMPREF1058_RS16800 at 592.144 kb on + strand, within HMPREF1058_RS16800 at 592.144 kb on + strand, within HMPREF1058_RS16800 at 592.144 kb on + strand, within HMPREF1058_RS16800 at 592.144 kb on + strand, within HMPREF1058_RS16800 at 592.145 kb on - strand, within HMPREF1058_RS16800 at 592.164 kb on - strand, within HMPREF1058_RS16800 at 592.177 kb on - strand, within HMPREF1058_RS16800 at 592.248 kb on + strand, within HMPREF1058_RS16800 at 592.267 kb on - strand at 592.290 kb on + strand, within HMPREF1058_RS16800 at 592.291 kb on - strand, within HMPREF1058_RS16800 at 592.335 kb on + strand, within HMPREF1058_RS16800 at 592.335 kb on + strand, within HMPREF1058_RS16800 at 592.336 kb on - strand, within HMPREF1058_RS16800 at 592.341 kb on - strand, within HMPREF1058_RS16800 at 592.360 kb on - strand, within HMPREF1058_RS16800 at 592.369 kb on - strand, within HMPREF1058_RS16800 at 592.386 kb on - strand at 592.541 kb on + strand, within HMPREF1058_RS16800 at 592.547 kb on + strand, within HMPREF1058_RS16800 at 592.548 kb on - strand, within HMPREF1058_RS16800 at 592.548 kb on - strand, within HMPREF1058_RS16800 at 592.554 kb on - strand, within HMPREF1058_RS16800 at 592.566 kb on + strand, within HMPREF1058_RS16800 at 592.600 kb on - strand, within HMPREF1058_RS16800 at 592.649 kb on - strand, within HMPREF1058_RS16800 at 592.712 kb on + strand, within HMPREF1058_RS16800 at 592.730 kb on + strand, within HMPREF1058_RS16800 at 592.730 kb on + strand, within HMPREF1058_RS16800 at 592.730 kb on + strand, within HMPREF1058_RS16800 at 592.746 kb on + strand, within HMPREF1058_RS16800 at 592.746 kb on + strand, within HMPREF1058_RS16800 at 592.747 kb on - strand, within HMPREF1058_RS16800 at 592.792 kb on + strand, within HMPREF1058_RS16800
Per-strain Table
Position Strand Gene LocusTag Fraction Promitor 10 mg/mL (C) remove 590,261 + -2.4 590,267 - +0.0 590,270 - +0.3 590,273 - +0.6 590,279 - +0.8 590,279 - +0.2 590,426 - -0.5 590,506 - +0.2 590,506 - -1.5 590,529 + -0.3 590,529 + -1.5 590,530 - +0.6 590,530 - -1.6 590,530 - +0.8 590,557 + HMPREF1058_RS16810 0.14 +0.1 590,558 - HMPREF1058_RS16810 0.14 -0.1 590,558 - HMPREF1058_RS16810 0.14 -0.6 590,578 - HMPREF1058_RS16810 0.20 +0.5 590,578 - HMPREF1058_RS16810 0.20 +0.1 590,605 + HMPREF1058_RS16810 0.27 -0.6 590,606 - HMPREF1058_RS16810 0.27 -0.4 590,717 - HMPREF1058_RS16810 0.57 +0.7 590,786 + HMPREF1058_RS16810 0.75 -0.8 590,787 - HMPREF1058_RS16810 0.75 +0.9 590,830 + HMPREF1058_RS16810 0.87 +0.6 590,843 + -1.2 590,867 + -1.5 590,919 - -1.9 590,926 - -0.9 590,936 + +0.1 590,937 - -0.4 590,947 + -0.4 590,950 + +0.1 590,951 - -0.9 591,112 + +0.2 591,115 - +0.3 591,141 + -0.6 591,150 - +1.3 591,219 + +0.1 591,232 + -0.9 591,268 + +0.9 591,268 + +0.5 591,269 - +3.8 591,277 + +1.4 591,324 - HMPREF1058_RS16805 0.14 +0.1 591,387 - HMPREF1058_RS16805 0.25 +0.3 591,454 - HMPREF1058_RS16805 0.37 -1.4 591,480 + HMPREF1058_RS16805 0.41 +2.6 591,480 + HMPREF1058_RS16805 0.41 +3.1 591,486 + HMPREF1058_RS16805 0.42 +2.9 591,523 - HMPREF1058_RS16805 0.49 +2.3 591,575 - HMPREF1058_RS16805 0.58 +5.0 591,584 + HMPREF1058_RS16805 0.59 -0.4 591,640 - HMPREF1058_RS16805 0.69 +0.4 591,668 + HMPREF1058_RS16805 0.74 +1.5 591,710 + HMPREF1058_RS16805 0.81 +2.0 591,781 - +1.9 591,818 - -2.8 591,888 + -1.4 591,935 - -0.2 591,940 - +0.2 591,968 + +0.1 592,066 - -0.2 592,066 - +0.1 592,068 - -1.5 592,068 - +0.2 592,106 + -0.0 592,132 - HMPREF1058_RS16800 0.11 -0.1 592,134 - HMPREF1058_RS16800 0.12 +2.1 592,142 + HMPREF1058_RS16800 0.12 -1.8 592,142 + HMPREF1058_RS16800 0.12 +0.1 592,143 - HMPREF1058_RS16800 0.12 +0.2 592,143 - HMPREF1058_RS16800 0.12 -0.2 592,144 + HMPREF1058_RS16800 0.12 +0.1 592,144 + HMPREF1058_RS16800 0.12 -0.4 592,144 + HMPREF1058_RS16800 0.12 -0.7 592,144 + HMPREF1058_RS16800 0.12 +0.6 592,145 - HMPREF1058_RS16800 0.12 +0.1 592,164 - HMPREF1058_RS16800 0.14 -0.8 592,177 - HMPREF1058_RS16800 0.15 +0.2 592,248 + HMPREF1058_RS16800 0.19 -1.8 592,267 - +0.3 592,290 + HMPREF1058_RS16800 0.22 -0.1 592,291 - HMPREF1058_RS16800 0.22 +1.2 592,335 + HMPREF1058_RS16800 0.26 +0.3 592,335 + HMPREF1058_RS16800 0.26 -1.4 592,336 - HMPREF1058_RS16800 0.26 +0.8 592,341 - HMPREF1058_RS16800 0.26 +0.0 592,360 - HMPREF1058_RS16800 0.27 -0.1 592,369 - HMPREF1058_RS16800 0.28 -0.8 592,386 - +0.7 592,541 + HMPREF1058_RS16800 0.40 +0.7 592,547 + HMPREF1058_RS16800 0.40 -1.2 592,548 - HMPREF1058_RS16800 0.40 +1.4 592,548 - HMPREF1058_RS16800 0.40 +0.2 592,554 - HMPREF1058_RS16800 0.41 +0.3 592,566 + HMPREF1058_RS16800 0.42 +0.8 592,600 - HMPREF1058_RS16800 0.44 -0.5 592,649 - HMPREF1058_RS16800 0.47 -1.7 592,712 + HMPREF1058_RS16800 0.52 +1.0 592,730 + HMPREF1058_RS16800 0.53 -0.1 592,730 + HMPREF1058_RS16800 0.53 +1.2 592,730 + HMPREF1058_RS16800 0.53 -0.6 592,746 + HMPREF1058_RS16800 0.54 +1.3 592,746 + HMPREF1058_RS16800 0.54 +0.3 592,747 - HMPREF1058_RS16800 0.54 -0.2 592,792 + HMPREF1058_RS16800 0.57 +1.6
Or see this region's nucleotide sequence