Experiment: PreticX 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07080 and HMPREF1058_RS07075 are separated by 210 nucleotides HMPREF1058_RS07075 and HMPREF1058_RS07070 are separated by 125 nucleotides HMPREF1058_RS07070 and HMPREF1058_RS07065 are separated by 332 nucleotides
HMPREF1058_RS07080: HMPREF1058_RS07080 - YtxH domain-containing protein, at 321,967 to 322,164
_RS07080
HMPREF1058_RS07075: HMPREF1058_RS07075 - SPOR domain-containing protein, at 322,375 to 322,872
_RS07075
HMPREF1058_RS07070: HMPREF1058_RS07070 - PCMD domain-containing protein, at 322,998 to 323,957
_RS07070
HMPREF1058_RS07065: HMPREF1058_RS07065 - OmpA family protein, at 324,290 to 325,384
_RS07065
Position (kb) 322
323
324 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 322.024 kb on + strand, within HMPREF1058_RS07080 at 322.025 kb on - strand, within HMPREF1058_RS07080 at 322.025 kb on - strand, within HMPREF1058_RS07080 at 322.042 kb on - strand, within HMPREF1058_RS07080 at 322.046 kb on - strand, within HMPREF1058_RS07080 at 322.149 kb on + strand at 322.149 kb on + strand at 322.149 kb on + strand at 322.305 kb on + strand at 322.307 kb on + strand at 322.327 kb on + strand at 322.327 kb on + strand at 322.329 kb on + strand at 322.348 kb on + strand at 322.349 kb on - strand at 322.352 kb on - strand at 322.352 kb on - strand at 322.386 kb on - strand at 322.454 kb on - strand, within HMPREF1058_RS07075 at 322.465 kb on + strand, within HMPREF1058_RS07075 at 322.465 kb on + strand, within HMPREF1058_RS07075 at 322.626 kb on - strand, within HMPREF1058_RS07075 at 322.634 kb on - strand, within HMPREF1058_RS07075 at 322.635 kb on + strand, within HMPREF1058_RS07075 at 322.635 kb on + strand, within HMPREF1058_RS07075 at 322.636 kb on - strand, within HMPREF1058_RS07075 at 322.641 kb on - strand, within HMPREF1058_RS07075 at 322.643 kb on + strand, within HMPREF1058_RS07075 at 322.643 kb on + strand, within HMPREF1058_RS07075 at 322.651 kb on - strand, within HMPREF1058_RS07075 at 322.691 kb on - strand, within HMPREF1058_RS07075 at 322.709 kb on - strand, within HMPREF1058_RS07075 at 322.709 kb on - strand, within HMPREF1058_RS07075 at 322.728 kb on + strand, within HMPREF1058_RS07075 at 322.729 kb on - strand, within HMPREF1058_RS07075 at 322.743 kb on + strand, within HMPREF1058_RS07075 at 322.819 kb on + strand, within HMPREF1058_RS07075 at 322.853 kb on + strand at 322.856 kb on + strand at 322.856 kb on + strand at 322.857 kb on - strand at 322.857 kb on - strand at 322.858 kb on + strand at 322.860 kb on + strand at 322.861 kb on - strand at 322.861 kb on - strand at 322.861 kb on - strand at 322.865 kb on + strand at 322.865 kb on + strand at 322.866 kb on - strand at 322.867 kb on + strand at 322.871 kb on - strand at 322.904 kb on - strand at 322.906 kb on - strand at 322.910 kb on + strand at 322.959 kb on + strand at 323.005 kb on - strand at 323.005 kb on - strand at 323.008 kb on - strand at 323.041 kb on + strand at 323.042 kb on - strand at 323.052 kb on + strand at 323.170 kb on + strand at 323.196 kb on - strand, within HMPREF1058_RS07070 at 323.196 kb on - strand, within HMPREF1058_RS07070 at 323.207 kb on + strand, within HMPREF1058_RS07070 at 323.208 kb on - strand, within HMPREF1058_RS07070 at 323.280 kb on - strand, within HMPREF1058_RS07070 at 323.338 kb on + strand, within HMPREF1058_RS07070 at 323.353 kb on + strand, within HMPREF1058_RS07070 at 323.369 kb on + strand, within HMPREF1058_RS07070 at 323.369 kb on + strand, within HMPREF1058_RS07070 at 323.372 kb on + strand, within HMPREF1058_RS07070 at 323.397 kb on + strand, within HMPREF1058_RS07070 at 323.408 kb on + strand, within HMPREF1058_RS07070 at 323.408 kb on + strand, within HMPREF1058_RS07070 at 323.502 kb on + strand, within HMPREF1058_RS07070 at 323.510 kb on - strand, within HMPREF1058_RS07070 at 323.534 kb on + strand, within HMPREF1058_RS07070 at 323.616 kb on - strand, within HMPREF1058_RS07070 at 323.709 kb on - strand, within HMPREF1058_RS07070 at 323.709 kb on - strand, within HMPREF1058_RS07070 at 323.712 kb on + strand, within HMPREF1058_RS07070 at 323.713 kb on - strand, within HMPREF1058_RS07070 at 323.725 kb on - strand, within HMPREF1058_RS07070 at 323.725 kb on - strand, within HMPREF1058_RS07070 at 323.732 kb on + strand, within HMPREF1058_RS07070 at 323.733 kb on - strand, within HMPREF1058_RS07070 at 323.733 kb on - strand, within HMPREF1058_RS07070 at 323.798 kb on + strand, within HMPREF1058_RS07070 at 323.798 kb on + strand, within HMPREF1058_RS07070 at 323.799 kb on - strand, within HMPREF1058_RS07070 at 323.858 kb on + strand, within HMPREF1058_RS07070 at 323.922 kb on - strand at 323.965 kb on + strand at 323.965 kb on + strand at 323.966 kb on - strand at 324.002 kb on + strand at 324.004 kb on + strand at 324.004 kb on + strand at 324.005 kb on - strand at 324.005 kb on - strand at 324.005 kb on - strand at 324.006 kb on + strand at 324.007 kb on - strand at 324.007 kb on - strand at 324.027 kb on + strand at 324.027 kb on + strand at 324.041 kb on - strand at 324.042 kb on + strand at 324.042 kb on + strand at 324.043 kb on - strand at 324.045 kb on - strand at 324.045 kb on - strand at 324.056 kb on - strand at 324.140 kb on + strand at 324.140 kb on + strand at 324.141 kb on - strand at 324.193 kb on - strand at 324.242 kb on - strand at 324.308 kb on - strand at 324.325 kb on - strand at 324.412 kb on - strand, within HMPREF1058_RS07065 at 324.495 kb on + strand, within HMPREF1058_RS07065 at 324.540 kb on - strand, within HMPREF1058_RS07065 at 324.544 kb on + strand, within HMPREF1058_RS07065 at 324.550 kb on + strand, within HMPREF1058_RS07065 at 324.551 kb on - strand, within HMPREF1058_RS07065 at 324.592 kb on + strand, within HMPREF1058_RS07065 at 324.639 kb on - strand, within HMPREF1058_RS07065 at 324.687 kb on - strand, within HMPREF1058_RS07065 at 324.732 kb on + strand, within HMPREF1058_RS07065 at 324.732 kb on + strand, within HMPREF1058_RS07065 at 324.737 kb on + strand, within HMPREF1058_RS07065 at 324.738 kb on - strand, within HMPREF1058_RS07065 at 324.761 kb on - strand, within HMPREF1058_RS07065 at 324.844 kb on + strand, within HMPREF1058_RS07065 at 324.845 kb on - strand, within HMPREF1058_RS07065 at 324.845 kb on - strand, within HMPREF1058_RS07065 at 324.890 kb on - strand, within HMPREF1058_RS07065 at 324.919 kb on + strand, within HMPREF1058_RS07065 at 324.919 kb on + strand, within HMPREF1058_RS07065 at 324.954 kb on + strand, within HMPREF1058_RS07065 at 324.955 kb on - strand, within HMPREF1058_RS07065 at 324.955 kb on - strand, within HMPREF1058_RS07065
Per-strain Table
Position Strand Gene LocusTag Fraction PreticX 10 mg/mL (C) remove 322,024 + HMPREF1058_RS07080 0.29 -0.6 322,025 - HMPREF1058_RS07080 0.29 +0.3 322,025 - HMPREF1058_RS07080 0.29 -0.0 322,042 - HMPREF1058_RS07080 0.38 -0.7 322,046 - HMPREF1058_RS07080 0.40 -0.4 322,149 + -0.8 322,149 + +0.0 322,149 + -0.3 322,305 + -0.8 322,307 + +1.0 322,327 + +0.4 322,327 + +0.5 322,329 + -0.1 322,348 + -0.5 322,349 - -0.8 322,352 - -1.5 322,352 - +1.2 322,386 - -2.1 322,454 - HMPREF1058_RS07075 0.16 -1.7 322,465 + HMPREF1058_RS07075 0.18 -1.9 322,465 + HMPREF1058_RS07075 0.18 -0.7 322,626 - HMPREF1058_RS07075 0.50 -0.5 322,634 - HMPREF1058_RS07075 0.52 +0.5 322,635 + HMPREF1058_RS07075 0.52 -0.4 322,635 + HMPREF1058_RS07075 0.52 -1.2 322,636 - HMPREF1058_RS07075 0.52 +0.3 322,641 - HMPREF1058_RS07075 0.53 +0.6 322,643 + HMPREF1058_RS07075 0.54 -1.6 322,643 + HMPREF1058_RS07075 0.54 -2.0 322,651 - HMPREF1058_RS07075 0.55 +0.3 322,691 - HMPREF1058_RS07075 0.63 -1.0 322,709 - HMPREF1058_RS07075 0.67 +0.3 322,709 - HMPREF1058_RS07075 0.67 -2.0 322,728 + HMPREF1058_RS07075 0.71 +2.1 322,729 - HMPREF1058_RS07075 0.71 -1.7 322,743 + HMPREF1058_RS07075 0.74 -2.6 322,819 + HMPREF1058_RS07075 0.89 -2.8 322,853 + -0.4 322,856 + -0.7 322,856 + +0.4 322,857 - -0.5 322,857 - -2.5 322,858 + -2.2 322,860 + +0.0 322,861 - +0.3 322,861 - +0.2 322,861 - -0.6 322,865 + +0.5 322,865 + +0.6 322,866 - -0.2 322,867 + +1.2 322,871 - +1.5 322,904 - -1.8 322,906 - -1.0 322,910 + +0.5 322,959 + +1.0 323,005 - -0.7 323,005 - -0.3 323,008 - +0.6 323,041 + -0.1 323,042 - -0.4 323,052 + +1.3 323,170 + +0.0 323,196 - HMPREF1058_RS07070 0.21 +0.3 323,196 - HMPREF1058_RS07070 0.21 -1.5 323,207 + HMPREF1058_RS07070 0.22 +0.3 323,208 - HMPREF1058_RS07070 0.22 -0.8 323,280 - HMPREF1058_RS07070 0.29 -0.2 323,338 + HMPREF1058_RS07070 0.35 +2.7 323,353 + HMPREF1058_RS07070 0.37 +1.4 323,369 + HMPREF1058_RS07070 0.39 +0.9 323,369 + HMPREF1058_RS07070 0.39 +0.7 323,372 + HMPREF1058_RS07070 0.39 -1.5 323,397 + HMPREF1058_RS07070 0.42 +0.3 323,408 + HMPREF1058_RS07070 0.43 -1.6 323,408 + HMPREF1058_RS07070 0.43 +0.5 323,502 + HMPREF1058_RS07070 0.53 +0.2 323,510 - HMPREF1058_RS07070 0.53 -0.2 323,534 + HMPREF1058_RS07070 0.56 -0.9 323,616 - HMPREF1058_RS07070 0.64 -0.2 323,709 - HMPREF1058_RS07070 0.74 -0.2 323,709 - HMPREF1058_RS07070 0.74 +0.7 323,712 + HMPREF1058_RS07070 0.74 -0.0 323,713 - HMPREF1058_RS07070 0.74 -2.1 323,725 - HMPREF1058_RS07070 0.76 +1.0 323,725 - HMPREF1058_RS07070 0.76 +1.2 323,732 + HMPREF1058_RS07070 0.76 -0.2 323,733 - HMPREF1058_RS07070 0.77 +0.2 323,733 - HMPREF1058_RS07070 0.77 -1.6 323,798 + HMPREF1058_RS07070 0.83 +0.7 323,798 + HMPREF1058_RS07070 0.83 +0.1 323,799 - HMPREF1058_RS07070 0.83 -0.7 323,858 + HMPREF1058_RS07070 0.90 +0.9 323,922 - +0.9 323,965 + +0.3 323,965 + +1.9 323,966 - -0.1 324,002 + -0.7 324,004 + +0.1 324,004 + -0.0 324,005 - +0.6 324,005 - +0.6 324,005 - -0.7 324,006 + -0.0 324,007 - +0.5 324,007 - +0.1 324,027 + +0.6 324,027 + +0.4 324,041 - +0.1 324,042 + +0.2 324,042 + -0.6 324,043 - +0.6 324,045 - +0.6 324,045 - -0.3 324,056 - +0.3 324,140 + -0.3 324,140 + +1.9 324,141 - +1.2 324,193 - +2.7 324,242 - +0.6 324,308 - -1.4 324,325 - -1.7 324,412 - HMPREF1058_RS07065 0.11 +0.2 324,495 + HMPREF1058_RS07065 0.19 -0.6 324,540 - HMPREF1058_RS07065 0.23 -1.7 324,544 + HMPREF1058_RS07065 0.23 -1.7 324,550 + HMPREF1058_RS07065 0.24 -2.1 324,551 - HMPREF1058_RS07065 0.24 -1.4 324,592 + HMPREF1058_RS07065 0.28 -2.2 324,639 - HMPREF1058_RS07065 0.32 -1.8 324,687 - HMPREF1058_RS07065 0.36 -1.8 324,732 + HMPREF1058_RS07065 0.40 -2.6 324,732 + HMPREF1058_RS07065 0.40 -1.1 324,737 + HMPREF1058_RS07065 0.41 -0.6 324,738 - HMPREF1058_RS07065 0.41 -1.4 324,761 - HMPREF1058_RS07065 0.43 -3.6 324,844 + HMPREF1058_RS07065 0.51 -0.3 324,845 - HMPREF1058_RS07065 0.51 +1.0 324,845 - HMPREF1058_RS07065 0.51 +0.6 324,890 - HMPREF1058_RS07065 0.55 -0.8 324,919 + HMPREF1058_RS07065 0.57 -0.4 324,919 + HMPREF1058_RS07065 0.57 -1.8 324,954 + HMPREF1058_RS07065 0.61 -1.7 324,955 - HMPREF1058_RS07065 0.61 -0.3 324,955 - HMPREF1058_RS07065 0.61 -1.3
Or see this region's nucleotide sequence