Experiment: PreticX 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07065 and HMPREF1058_RS07060 are separated by 43 nucleotides HMPREF1058_RS07060 and HMPREF1058_RS07055 are separated by 10 nucleotides HMPREF1058_RS07055 and HMPREF1058_RS07050 are separated by 206 nucleotides HMPREF1058_RS07050 and HMPREF1058_RS07045 are separated by 23 nucleotides
HMPREF1058_RS07065: HMPREF1058_RS07065 - OmpA family protein, at 324,290 to 325,384
_RS07065
HMPREF1058_RS07060: HMPREF1058_RS07060 - DUF3869 domain-containing protein, at 325,428 to 326,276
_RS07060
HMPREF1058_RS07055: HMPREF1058_RS07055 - hypothetical protein, at 326,287 to 327,525
_RS07055
HMPREF1058_RS07050: HMPREF1058_RS07050 - Holliday junction resolvase RuvX, at 327,732 to 328,151
_RS07050
HMPREF1058_RS07045: HMPREF1058_RS07045 - peptide deformylase, at 328,175 to 328,729
_RS07045
Position (kb) 326
327
328 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 325.301 kb on - strand at 325.301 kb on - strand at 325.341 kb on - strand at 325.405 kb on + strand at 325.442 kb on + strand at 325.443 kb on - strand at 325.542 kb on - strand, within HMPREF1058_RS07060 at 325.547 kb on + strand, within HMPREF1058_RS07060 at 325.639 kb on + strand, within HMPREF1058_RS07060 at 325.656 kb on - strand, within HMPREF1058_RS07060 at 325.681 kb on - strand, within HMPREF1058_RS07060 at 325.681 kb on - strand, within HMPREF1058_RS07060 at 325.689 kb on + strand, within HMPREF1058_RS07060 at 325.734 kb on - strand, within HMPREF1058_RS07060 at 325.777 kb on - strand, within HMPREF1058_RS07060 at 325.804 kb on + strand, within HMPREF1058_RS07060 at 325.819 kb on + strand, within HMPREF1058_RS07060 at 325.820 kb on - strand, within HMPREF1058_RS07060 at 325.863 kb on - strand, within HMPREF1058_RS07060 at 325.873 kb on - strand, within HMPREF1058_RS07060 at 325.926 kb on - strand, within HMPREF1058_RS07060 at 325.928 kb on + strand, within HMPREF1058_RS07060 at 325.974 kb on - strand, within HMPREF1058_RS07060 at 326.003 kb on - strand, within HMPREF1058_RS07060 at 326.014 kb on - strand, within HMPREF1058_RS07060 at 326.016 kb on - strand, within HMPREF1058_RS07060 at 326.034 kb on + strand, within HMPREF1058_RS07060 at 326.035 kb on - strand, within HMPREF1058_RS07060 at 326.098 kb on - strand, within HMPREF1058_RS07060 at 326.221 kb on - strand at 326.223 kb on + strand at 326.240 kb on + strand at 326.334 kb on + strand at 326.335 kb on - strand at 326.368 kb on - strand at 326.369 kb on + strand at 326.370 kb on - strand at 326.382 kb on - strand at 326.406 kb on - strand at 326.445 kb on + strand, within HMPREF1058_RS07055 at 326.448 kb on - strand, within HMPREF1058_RS07055 at 326.448 kb on - strand, within HMPREF1058_RS07055 at 326.448 kb on - strand, within HMPREF1058_RS07055 at 326.452 kb on - strand, within HMPREF1058_RS07055 at 326.452 kb on - strand, within HMPREF1058_RS07055 at 326.452 kb on - strand, within HMPREF1058_RS07055 at 326.452 kb on - strand, within HMPREF1058_RS07055 at 326.506 kb on - strand, within HMPREF1058_RS07055 at 326.567 kb on - strand, within HMPREF1058_RS07055 at 326.599 kb on + strand, within HMPREF1058_RS07055 at 326.599 kb on + strand, within HMPREF1058_RS07055 at 326.603 kb on + strand, within HMPREF1058_RS07055 at 326.604 kb on - strand, within HMPREF1058_RS07055 at 326.694 kb on - strand at 326.722 kb on + strand, within HMPREF1058_RS07055 at 326.723 kb on - strand at 326.723 kb on - strand, within HMPREF1058_RS07055 at 326.723 kb on - strand, within HMPREF1058_RS07055 at 326.723 kb on - strand, within HMPREF1058_RS07055 at 326.728 kb on + strand, within HMPREF1058_RS07055 at 326.728 kb on + strand, within HMPREF1058_RS07055 at 326.728 kb on + strand, within HMPREF1058_RS07055 at 326.729 kb on - strand, within HMPREF1058_RS07055 at 326.739 kb on + strand, within HMPREF1058_RS07055 at 326.749 kb on + strand, within HMPREF1058_RS07055 at 326.750 kb on - strand, within HMPREF1058_RS07055 at 326.752 kb on - strand, within HMPREF1058_RS07055 at 326.789 kb on - strand, within HMPREF1058_RS07055 at 326.824 kb on + strand, within HMPREF1058_RS07055 at 326.825 kb on - strand, within HMPREF1058_RS07055 at 326.826 kb on + strand, within HMPREF1058_RS07055 at 326.841 kb on - strand, within HMPREF1058_RS07055 at 326.844 kb on + strand, within HMPREF1058_RS07055 at 326.845 kb on - strand, within HMPREF1058_RS07055 at 326.847 kb on + strand, within HMPREF1058_RS07055 at 326.847 kb on + strand, within HMPREF1058_RS07055 at 326.847 kb on + strand, within HMPREF1058_RS07055 at 326.850 kb on - strand, within HMPREF1058_RS07055 at 326.878 kb on + strand, within HMPREF1058_RS07055 at 326.881 kb on - strand, within HMPREF1058_RS07055 at 326.881 kb on - strand, within HMPREF1058_RS07055 at 326.881 kb on - strand, within HMPREF1058_RS07055 at 326.881 kb on - strand, within HMPREF1058_RS07055 at 326.928 kb on - strand, within HMPREF1058_RS07055 at 326.975 kb on + strand, within HMPREF1058_RS07055 at 327.004 kb on + strand, within HMPREF1058_RS07055 at 327.005 kb on - strand, within HMPREF1058_RS07055 at 327.016 kb on + strand, within HMPREF1058_RS07055 at 327.039 kb on + strand, within HMPREF1058_RS07055 at 327.039 kb on + strand, within HMPREF1058_RS07055 at 327.041 kb on + strand, within HMPREF1058_RS07055 at 327.046 kb on + strand, within HMPREF1058_RS07055 at 327.058 kb on + strand, within HMPREF1058_RS07055 at 327.066 kb on + strand, within HMPREF1058_RS07055 at 327.066 kb on + strand, within HMPREF1058_RS07055 at 327.216 kb on + strand, within HMPREF1058_RS07055 at 327.217 kb on - strand, within HMPREF1058_RS07055 at 327.220 kb on - strand, within HMPREF1058_RS07055 at 327.220 kb on - strand, within HMPREF1058_RS07055 at 327.220 kb on - strand, within HMPREF1058_RS07055 at 327.221 kb on + strand, within HMPREF1058_RS07055 at 327.222 kb on - strand, within HMPREF1058_RS07055 at 327.222 kb on - strand, within HMPREF1058_RS07055 at 327.274 kb on + strand, within HMPREF1058_RS07055 at 327.280 kb on - strand, within HMPREF1058_RS07055 at 327.280 kb on - strand, within HMPREF1058_RS07055 at 327.280 kb on - strand, within HMPREF1058_RS07055 at 327.283 kb on + strand, within HMPREF1058_RS07055 at 327.284 kb on - strand, within HMPREF1058_RS07055 at 327.339 kb on - strand, within HMPREF1058_RS07055 at 327.339 kb on - strand, within HMPREF1058_RS07055 at 327.409 kb on + strand at 327.466 kb on - strand at 327.466 kb on - strand at 327.469 kb on + strand at 327.471 kb on + strand at 327.472 kb on - strand at 327.472 kb on - strand at 327.528 kb on + strand at 327.570 kb on - strand at 327.686 kb on + strand at 327.689 kb on - strand at 327.698 kb on - strand at 327.731 kb on + strand at 328.143 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PreticX 10 mg/mL (C) remove 325,301 - -1.1 325,301 - -1.9 325,341 - +0.3 325,405 + -2.1 325,442 + -0.6 325,443 - -1.1 325,542 - HMPREF1058_RS07060 0.13 +0.2 325,547 + HMPREF1058_RS07060 0.14 -1.9 325,639 + HMPREF1058_RS07060 0.25 -0.7 325,656 - HMPREF1058_RS07060 0.27 -1.6 325,681 - HMPREF1058_RS07060 0.30 -0.2 325,681 - HMPREF1058_RS07060 0.30 -2.6 325,689 + HMPREF1058_RS07060 0.31 -2.2 325,734 - HMPREF1058_RS07060 0.36 +0.4 325,777 - HMPREF1058_RS07060 0.41 +0.7 325,804 + HMPREF1058_RS07060 0.44 -2.4 325,819 + HMPREF1058_RS07060 0.46 -0.1 325,820 - HMPREF1058_RS07060 0.46 +0.3 325,863 - HMPREF1058_RS07060 0.51 +0.9 325,873 - HMPREF1058_RS07060 0.52 -0.4 325,926 - HMPREF1058_RS07060 0.59 -0.8 325,928 + HMPREF1058_RS07060 0.59 -1.1 325,974 - HMPREF1058_RS07060 0.64 -3.5 326,003 - HMPREF1058_RS07060 0.68 -1.9 326,014 - HMPREF1058_RS07060 0.69 -0.7 326,016 - HMPREF1058_RS07060 0.69 -1.7 326,034 + HMPREF1058_RS07060 0.71 +0.0 326,035 - HMPREF1058_RS07060 0.71 -0.3 326,098 - HMPREF1058_RS07060 0.79 -1.1 326,221 - -0.5 326,223 + -0.3 326,240 + -0.1 326,334 + -0.3 326,335 - +1.8 326,368 - -1.2 326,369 + -1.0 326,370 - -1.5 326,382 - +0.6 326,406 - -0.3 326,445 + HMPREF1058_RS07055 0.13 -1.0 326,448 - HMPREF1058_RS07055 0.13 -0.7 326,448 - HMPREF1058_RS07055 0.13 -1.3 326,448 - HMPREF1058_RS07055 0.13 -1.4 326,452 - HMPREF1058_RS07055 0.13 -2.2 326,452 - HMPREF1058_RS07055 0.13 -0.2 326,452 - HMPREF1058_RS07055 0.13 -0.1 326,452 - HMPREF1058_RS07055 0.13 -0.8 326,506 - HMPREF1058_RS07055 0.18 -0.4 326,567 - HMPREF1058_RS07055 0.23 -1.1 326,599 + HMPREF1058_RS07055 0.25 -0.4 326,599 + HMPREF1058_RS07055 0.25 -0.8 326,603 + HMPREF1058_RS07055 0.26 -1.4 326,604 - HMPREF1058_RS07055 0.26 +1.7 326,694 - -0.3 326,722 + HMPREF1058_RS07055 0.35 +1.2 326,723 - +0.2 326,723 - HMPREF1058_RS07055 0.35 -1.6 326,723 - HMPREF1058_RS07055 0.35 +0.3 326,723 - HMPREF1058_RS07055 0.35 -2.0 326,728 + HMPREF1058_RS07055 0.36 -1.6 326,728 + HMPREF1058_RS07055 0.36 +0.4 326,728 + HMPREF1058_RS07055 0.36 -1.1 326,729 - HMPREF1058_RS07055 0.36 +0.2 326,739 + HMPREF1058_RS07055 0.36 +0.5 326,749 + HMPREF1058_RS07055 0.37 -1.4 326,750 - HMPREF1058_RS07055 0.37 -0.9 326,752 - HMPREF1058_RS07055 0.38 -0.7 326,789 - HMPREF1058_RS07055 0.41 +0.2 326,824 + HMPREF1058_RS07055 0.43 -2.0 326,825 - HMPREF1058_RS07055 0.43 -1.2 326,826 + HMPREF1058_RS07055 0.44 -3.3 326,841 - HMPREF1058_RS07055 0.45 -0.3 326,844 + HMPREF1058_RS07055 0.45 -0.7 326,845 - HMPREF1058_RS07055 0.45 -1.6 326,847 + HMPREF1058_RS07055 0.45 +0.2 326,847 + HMPREF1058_RS07055 0.45 -0.4 326,847 + HMPREF1058_RS07055 0.45 -0.7 326,850 - HMPREF1058_RS07055 0.45 -1.1 326,878 + HMPREF1058_RS07055 0.48 -1.0 326,881 - HMPREF1058_RS07055 0.48 -0.8 326,881 - HMPREF1058_RS07055 0.48 -0.4 326,881 - HMPREF1058_RS07055 0.48 -0.8 326,881 - HMPREF1058_RS07055 0.48 -1.3 326,928 - HMPREF1058_RS07055 0.52 -2.7 326,975 + HMPREF1058_RS07055 0.56 -0.3 327,004 + HMPREF1058_RS07055 0.58 -0.1 327,005 - HMPREF1058_RS07055 0.58 +0.2 327,016 + HMPREF1058_RS07055 0.59 -2.3 327,039 + HMPREF1058_RS07055 0.61 -1.9 327,039 + HMPREF1058_RS07055 0.61 -2.0 327,041 + HMPREF1058_RS07055 0.61 +0.7 327,046 + HMPREF1058_RS07055 0.61 -2.8 327,058 + HMPREF1058_RS07055 0.62 -0.3 327,066 + HMPREF1058_RS07055 0.63 -0.7 327,066 + HMPREF1058_RS07055 0.63 -0.8 327,216 + HMPREF1058_RS07055 0.75 +0.3 327,217 - HMPREF1058_RS07055 0.75 -2.3 327,220 - HMPREF1058_RS07055 0.75 -2.0 327,220 - HMPREF1058_RS07055 0.75 -0.6 327,220 - HMPREF1058_RS07055 0.75 -1.7 327,221 + HMPREF1058_RS07055 0.75 -1.4 327,222 - HMPREF1058_RS07055 0.75 -1.8 327,222 - HMPREF1058_RS07055 0.75 +0.4 327,274 + HMPREF1058_RS07055 0.80 -0.7 327,280 - HMPREF1058_RS07055 0.80 -1.1 327,280 - HMPREF1058_RS07055 0.80 -0.6 327,280 - HMPREF1058_RS07055 0.80 -0.5 327,283 + HMPREF1058_RS07055 0.80 +0.2 327,284 - HMPREF1058_RS07055 0.80 +0.4 327,339 - HMPREF1058_RS07055 0.85 -0.1 327,339 - HMPREF1058_RS07055 0.85 -0.8 327,409 + -0.5 327,466 - +0.6 327,466 - -0.5 327,469 + -1.6 327,471 + -1.4 327,472 - -1.0 327,472 - +0.3 327,528 + +0.2 327,570 - -0.7 327,686 + -3.5 327,689 - +0.2 327,698 - +1.3 327,731 + -0.4 328,143 + +1.3
Or see this region's nucleotide sequence