Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07055

Experiment: Vitagos 5650 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07065 and HMPREF1058_RS07060 are separated by 43 nucleotidesHMPREF1058_RS07060 and HMPREF1058_RS07055 are separated by 10 nucleotidesHMPREF1058_RS07055 and HMPREF1058_RS07050 are separated by 206 nucleotidesHMPREF1058_RS07050 and HMPREF1058_RS07045 are separated by 23 nucleotides HMPREF1058_RS07065: HMPREF1058_RS07065 - OmpA family protein, at 324,290 to 325,384 _RS07065 HMPREF1058_RS07060: HMPREF1058_RS07060 - DUF3869 domain-containing protein, at 325,428 to 326,276 _RS07060 HMPREF1058_RS07055: HMPREF1058_RS07055 - hypothetical protein, at 326,287 to 327,525 _RS07055 HMPREF1058_RS07050: HMPREF1058_RS07050 - Holliday junction resolvase RuvX, at 327,732 to 328,151 _RS07050 HMPREF1058_RS07045: HMPREF1058_RS07045 - peptide deformylase, at 328,175 to 328,729 _RS07045 Position (kb) 326 327 328Strain fitness (log2 ratio) -3 -2 -1 0 1at 325.301 kb on - strandat 325.301 kb on - strandat 325.341 kb on - strandat 325.405 kb on + strandat 325.442 kb on + strandat 325.443 kb on - strandat 325.542 kb on - strand, within HMPREF1058_RS07060at 325.547 kb on + strand, within HMPREF1058_RS07060at 325.639 kb on + strand, within HMPREF1058_RS07060at 325.656 kb on - strand, within HMPREF1058_RS07060at 325.681 kb on - strand, within HMPREF1058_RS07060at 325.681 kb on - strand, within HMPREF1058_RS07060at 325.689 kb on + strand, within HMPREF1058_RS07060at 325.734 kb on - strand, within HMPREF1058_RS07060at 325.777 kb on - strand, within HMPREF1058_RS07060at 325.804 kb on + strand, within HMPREF1058_RS07060at 325.819 kb on + strand, within HMPREF1058_RS07060at 325.820 kb on - strand, within HMPREF1058_RS07060at 325.863 kb on - strand, within HMPREF1058_RS07060at 325.873 kb on - strand, within HMPREF1058_RS07060at 325.926 kb on - strand, within HMPREF1058_RS07060at 325.928 kb on + strand, within HMPREF1058_RS07060at 325.974 kb on - strand, within HMPREF1058_RS07060at 326.003 kb on - strand, within HMPREF1058_RS07060at 326.014 kb on - strand, within HMPREF1058_RS07060at 326.016 kb on - strand, within HMPREF1058_RS07060at 326.034 kb on + strand, within HMPREF1058_RS07060at 326.035 kb on - strand, within HMPREF1058_RS07060at 326.098 kb on - strand, within HMPREF1058_RS07060at 326.221 kb on - strandat 326.223 kb on + strandat 326.240 kb on + strandat 326.334 kb on + strandat 326.335 kb on - strandat 326.368 kb on - strandat 326.369 kb on + strandat 326.370 kb on - strandat 326.382 kb on - strandat 326.406 kb on - strandat 326.445 kb on + strand, within HMPREF1058_RS07055at 326.448 kb on - strand, within HMPREF1058_RS07055at 326.448 kb on - strand, within HMPREF1058_RS07055at 326.448 kb on - strand, within HMPREF1058_RS07055at 326.452 kb on - strand, within HMPREF1058_RS07055at 326.452 kb on - strand, within HMPREF1058_RS07055at 326.452 kb on - strand, within HMPREF1058_RS07055at 326.452 kb on - strand, within HMPREF1058_RS07055at 326.506 kb on - strand, within HMPREF1058_RS07055at 326.567 kb on - strand, within HMPREF1058_RS07055at 326.599 kb on + strand, within HMPREF1058_RS07055at 326.599 kb on + strand, within HMPREF1058_RS07055at 326.603 kb on + strand, within HMPREF1058_RS07055at 326.604 kb on - strand, within HMPREF1058_RS07055at 326.694 kb on - strandat 326.722 kb on + strand, within HMPREF1058_RS07055at 326.723 kb on - strandat 326.723 kb on - strand, within HMPREF1058_RS07055at 326.723 kb on - strand, within HMPREF1058_RS07055at 326.723 kb on - strand, within HMPREF1058_RS07055at 326.728 kb on + strand, within HMPREF1058_RS07055at 326.728 kb on + strand, within HMPREF1058_RS07055at 326.728 kb on + strand, within HMPREF1058_RS07055at 326.729 kb on - strand, within HMPREF1058_RS07055at 326.739 kb on + strand, within HMPREF1058_RS07055at 326.749 kb on + strand, within HMPREF1058_RS07055at 326.750 kb on - strand, within HMPREF1058_RS07055at 326.752 kb on - strand, within HMPREF1058_RS07055at 326.789 kb on - strand, within HMPREF1058_RS07055at 326.824 kb on + strand, within HMPREF1058_RS07055at 326.825 kb on - strand, within HMPREF1058_RS07055at 326.826 kb on + strand, within HMPREF1058_RS07055at 326.841 kb on - strand, within HMPREF1058_RS07055at 326.844 kb on + strand, within HMPREF1058_RS07055at 326.845 kb on - strand, within HMPREF1058_RS07055at 326.847 kb on + strand, within HMPREF1058_RS07055at 326.847 kb on + strand, within HMPREF1058_RS07055at 326.847 kb on + strand, within HMPREF1058_RS07055at 326.850 kb on - strand, within HMPREF1058_RS07055at 326.878 kb on + strand, within HMPREF1058_RS07055at 326.881 kb on - strand, within HMPREF1058_RS07055at 326.881 kb on - strand, within HMPREF1058_RS07055at 326.881 kb on - strand, within HMPREF1058_RS07055at 326.881 kb on - strand, within HMPREF1058_RS07055at 326.928 kb on - strand, within HMPREF1058_RS07055at 326.975 kb on + strand, within HMPREF1058_RS07055at 327.004 kb on + strand, within HMPREF1058_RS07055at 327.005 kb on - strand, within HMPREF1058_RS07055at 327.016 kb on + strand, within HMPREF1058_RS07055at 327.039 kb on + strand, within HMPREF1058_RS07055at 327.039 kb on + strand, within HMPREF1058_RS07055at 327.041 kb on + strand, within HMPREF1058_RS07055at 327.046 kb on + strand, within HMPREF1058_RS07055at 327.058 kb on + strand, within HMPREF1058_RS07055at 327.066 kb on + strand, within HMPREF1058_RS07055at 327.066 kb on + strand, within HMPREF1058_RS07055at 327.216 kb on + strand, within HMPREF1058_RS07055at 327.217 kb on - strand, within HMPREF1058_RS07055at 327.220 kb on - strand, within HMPREF1058_RS07055at 327.220 kb on - strand, within HMPREF1058_RS07055at 327.220 kb on - strand, within HMPREF1058_RS07055at 327.221 kb on + strand, within HMPREF1058_RS07055at 327.222 kb on - strand, within HMPREF1058_RS07055at 327.222 kb on - strand, within HMPREF1058_RS07055at 327.274 kb on + strand, within HMPREF1058_RS07055at 327.280 kb on - strand, within HMPREF1058_RS07055at 327.280 kb on - strand, within HMPREF1058_RS07055at 327.280 kb on - strand, within HMPREF1058_RS07055at 327.283 kb on + strand, within HMPREF1058_RS07055at 327.284 kb on - strand, within HMPREF1058_RS07055at 327.339 kb on - strand, within HMPREF1058_RS07055at 327.339 kb on - strand, within HMPREF1058_RS07055at 327.409 kb on + strandat 327.466 kb on - strandat 327.466 kb on - strandat 327.469 kb on + strandat 327.471 kb on + strandat 327.472 kb on - strandat 327.472 kb on - strandat 327.528 kb on + strandat 327.570 kb on - strandat 327.686 kb on + strandat 327.689 kb on - strandat 327.698 kb on - strandat 327.731 kb on + strandat 328.143 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vitagos 5650 10 mg/mL (C)
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325,301 - -1.3
325,301 - -2.2
325,341 - -1.0
325,405 + -2.4
325,442 + -0.8
325,443 - -2.4
325,542 - HMPREF1058_RS07060 0.13 -0.1
325,547 + HMPREF1058_RS07060 0.14 -2.2
325,639 + HMPREF1058_RS07060 0.25 -1.0
325,656 - HMPREF1058_RS07060 0.27 -1.8
325,681 - HMPREF1058_RS07060 0.30 -2.0
325,681 - HMPREF1058_RS07060 0.30 -2.9
325,689 + HMPREF1058_RS07060 0.31 -2.5
325,734 - HMPREF1058_RS07060 0.36 +0.2
325,777 - HMPREF1058_RS07060 0.41 +0.5
325,804 + HMPREF1058_RS07060 0.44 -2.7
325,819 + HMPREF1058_RS07060 0.46 -0.3
325,820 - HMPREF1058_RS07060 0.46 -1.0
325,863 - HMPREF1058_RS07060 0.51 -0.3
325,873 - HMPREF1058_RS07060 0.52 -0.7
325,926 - HMPREF1058_RS07060 0.59 +0.5
325,928 + HMPREF1058_RS07060 0.59 -1.3
325,974 - HMPREF1058_RS07060 0.64 -3.7
326,003 - HMPREF1058_RS07060 0.68 -2.2
326,014 - HMPREF1058_RS07060 0.69 -1.2
326,016 - HMPREF1058_RS07060 0.69 -2.9
326,034 + HMPREF1058_RS07060 0.71 -1.2
326,035 - HMPREF1058_RS07060 0.71 -0.5
326,098 - HMPREF1058_RS07060 0.79 -1.0
326,221 - -3.3
326,223 + -2.2
326,240 + +1.3
326,334 + -0.5
326,335 - +1.7
326,368 - -0.8
326,369 + -1.2
326,370 - -3.3
326,382 - -1.5
326,406 - -0.5
326,445 + HMPREF1058_RS07055 0.13 -1.2
326,448 - HMPREF1058_RS07055 0.13 -0.6
326,448 - HMPREF1058_RS07055 0.13 -0.6
326,448 - HMPREF1058_RS07055 0.13 -1.6
326,452 - HMPREF1058_RS07055 0.13 -0.9
326,452 - HMPREF1058_RS07055 0.13 -0.4
326,452 - HMPREF1058_RS07055 0.13 +0.3
326,452 - HMPREF1058_RS07055 0.13 -0.1
326,506 - HMPREF1058_RS07055 0.18 +0.3
326,567 - HMPREF1058_RS07055 0.23 -0.3
326,599 + HMPREF1058_RS07055 0.25 -3.0
326,599 + HMPREF1058_RS07055 0.25 -1.1
326,603 + HMPREF1058_RS07055 0.26 -0.6
326,604 - HMPREF1058_RS07055 0.26 -0.9
326,694 - -0.5
326,722 + HMPREF1058_RS07055 0.35 +0.9
326,723 - -0.1
326,723 - HMPREF1058_RS07055 0.35 -2.5
326,723 - HMPREF1058_RS07055 0.35 -0.1
326,723 - HMPREF1058_RS07055 0.35 +0.3
326,728 + HMPREF1058_RS07055 0.36 -0.2
326,728 + HMPREF1058_RS07055 0.36 +1.2
326,728 + HMPREF1058_RS07055 0.36 -1.3
326,729 - HMPREF1058_RS07055 0.36 -1.1
326,739 + HMPREF1058_RS07055 0.36 -1.0
326,749 + HMPREF1058_RS07055 0.37 -3.2
326,750 - HMPREF1058_RS07055 0.37 -2.5
326,752 - HMPREF1058_RS07055 0.38 +0.2
326,789 - HMPREF1058_RS07055 0.41 -0.7
326,824 + HMPREF1058_RS07055 0.43 -2.2
326,825 - HMPREF1058_RS07055 0.43 -1.4
326,826 + HMPREF1058_RS07055 0.44 -2.6
326,841 - HMPREF1058_RS07055 0.45 +0.5
326,844 + HMPREF1058_RS07055 0.45 -1.0
326,845 - HMPREF1058_RS07055 0.45 -1.8
326,847 + HMPREF1058_RS07055 0.45 -0.1
326,847 + HMPREF1058_RS07055 0.45 -0.7
326,847 + HMPREF1058_RS07055 0.45 -1.0
326,850 - HMPREF1058_RS07055 0.45 -1.3
326,878 + HMPREF1058_RS07055 0.48 -1.2
326,881 - HMPREF1058_RS07055 0.48 -0.1
326,881 - HMPREF1058_RS07055 0.48 -1.3
326,881 - HMPREF1058_RS07055 0.48 -3.3
326,881 - HMPREF1058_RS07055 0.48 -0.3
326,928 - HMPREF1058_RS07055 0.52 -2.9
326,975 + HMPREF1058_RS07055 0.56 -0.5
327,004 + HMPREF1058_RS07055 0.58 -0.3
327,005 - HMPREF1058_RS07055 0.58 +0.3
327,016 + HMPREF1058_RS07055 0.59 -2.5
327,039 + HMPREF1058_RS07055 0.61 -1.2
327,039 + HMPREF1058_RS07055 0.61 -2.2
327,041 + HMPREF1058_RS07055 0.61 +0.5
327,046 + HMPREF1058_RS07055 0.61 -3.1
327,058 + HMPREF1058_RS07055 0.62 -2.1
327,066 + HMPREF1058_RS07055 0.63 -1.0
327,066 + HMPREF1058_RS07055 0.63 -1.1
327,216 + HMPREF1058_RS07055 0.75 -1.0
327,217 - HMPREF1058_RS07055 0.75 -0.2
327,220 - HMPREF1058_RS07055 0.75 -0.9
327,220 - HMPREF1058_RS07055 0.75 -1.9
327,220 - HMPREF1058_RS07055 0.75 -0.7
327,221 + HMPREF1058_RS07055 0.75 -2.6
327,222 - HMPREF1058_RS07055 0.75 -0.1
327,222 - HMPREF1058_RS07055 0.75 +0.2
327,274 + HMPREF1058_RS07055 0.80 -1.0
327,280 - HMPREF1058_RS07055 0.80 -0.7
327,280 - HMPREF1058_RS07055 0.80 -0.8
327,280 - HMPREF1058_RS07055 0.80 -1.2
327,283 + HMPREF1058_RS07055 0.80 -0.1
327,284 - HMPREF1058_RS07055 0.80 -0.8
327,339 - HMPREF1058_RS07055 0.85 -0.3
327,339 - HMPREF1058_RS07055 0.85 +0.5
327,409 + -1.3
327,466 - -0.7
327,466 - +0.4
327,469 + +0.5
327,471 + +1.0
327,472 - -0.3
327,472 - -1.0
327,528 + -2.3
327,570 - -0.3
327,686 + -0.6
327,689 - -1.5
327,698 - +0.3
327,731 + -0.7
328,143 + +1.0

Or see this region's nucleotide sequence