Experiment: Vitagos 5650 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00545 and HMPREF1058_RS00540 are separated by 7 nucleotides HMPREF1058_RS00540 and HMPREF1058_RS00535 are separated by 18 nucleotides HMPREF1058_RS00535 and HMPREF1058_RS00530 are separated by 11 nucleotides
HMPREF1058_RS00545: HMPREF1058_RS00545 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 56,534 to 57,682
_RS00545
HMPREF1058_RS00540: HMPREF1058_RS00540 - M23 family metallopeptidase, at 57,690 to 58,547
_RS00540
HMPREF1058_RS00535: HMPREF1058_RS00535 - 16S rRNA processing protein RimM, at 58,566 to 59,084
_RS00535
HMPREF1058_RS00530: HMPREF1058_RS00530 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 59,096 to 60,400
_RS00530
Position (kb) 57
58
59 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 57.857 kb on - strand, within HMPREF1058_RS00540 at 57.917 kb on - strand, within HMPREF1058_RS00540 at 57.917 kb on - strand, within HMPREF1058_RS00540 at 58.038 kb on - strand, within HMPREF1058_RS00540 at 58.071 kb on - strand, within HMPREF1058_RS00540 at 58.115 kb on - strand, within HMPREF1058_RS00540 at 58.115 kb on - strand, within HMPREF1058_RS00540 at 58.224 kb on - strand, within HMPREF1058_RS00540 at 58.248 kb on - strand, within HMPREF1058_RS00540 at 58.250 kb on - strand, within HMPREF1058_RS00540 at 58.250 kb on - strand, within HMPREF1058_RS00540 at 58.250 kb on - strand, within HMPREF1058_RS00540 at 58.250 kb on - strand, within HMPREF1058_RS00540 at 58.335 kb on - strand, within HMPREF1058_RS00540 at 58.335 kb on - strand, within HMPREF1058_RS00540 at 58.335 kb on - strand, within HMPREF1058_RS00540 at 58.473 kb on - strand at 58.564 kb on - strand at 58.564 kb on - strand at 59.108 kb on - strand at 59.108 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vitagos 5650 10 mg/mL (C) remove 57,857 - HMPREF1058_RS00540 0.19 -1.4 57,917 - HMPREF1058_RS00540 0.26 -3.1 57,917 - HMPREF1058_RS00540 0.26 -0.0 58,038 - HMPREF1058_RS00540 0.41 -4.0 58,071 - HMPREF1058_RS00540 0.44 -3.5 58,115 - HMPREF1058_RS00540 0.50 -3.0 58,115 - HMPREF1058_RS00540 0.50 -0.9 58,224 - HMPREF1058_RS00540 0.62 -2.0 58,248 - HMPREF1058_RS00540 0.65 -1.2 58,250 - HMPREF1058_RS00540 0.65 -3.1 58,250 - HMPREF1058_RS00540 0.65 -1.3 58,250 - HMPREF1058_RS00540 0.65 +0.2 58,250 - HMPREF1058_RS00540 0.65 -2.3 58,335 - HMPREF1058_RS00540 0.75 -0.3 58,335 - HMPREF1058_RS00540 0.75 -2.3 58,335 - HMPREF1058_RS00540 0.75 -0.8 58,473 - -1.4 58,564 - +0.3 58,564 - +0.8 59,108 - -0.3 59,108 - +0.8
Or see this region's nucleotide sequence