Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18790

Experiment: Vitafiber 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vitafiber 10 mg/mL (C)
69,199	+				+2.0
69,199	+				+1.3
69,329	-				+1.0
69,421	+		HMPREF1058_RS18795	0.19	-0.2
69,428	-		HMPREF1058_RS18795	0.20	+1.3
69,438	-		HMPREF1058_RS18795	0.21	-1.1
69,439	+		HMPREF1058_RS18795	0.21	+0.7
69,440	-		HMPREF1058_RS18795	0.22	+1.4
69,443	+		HMPREF1058_RS18795	0.22	-0.4
69,499	-		HMPREF1058_RS18795	0.29	+0.3
69,665	+		HMPREF1058_RS18795	0.48	+0.7
69,665	+		HMPREF1058_RS18795	0.48	+1.2
69,709	+		HMPREF1058_RS18795	0.53	+0.7
69,710	-		HMPREF1058_RS18795	0.53	+0.2
69,710	-		HMPREF1058_RS18795	0.53	+0.4
69,740	+		HMPREF1058_RS18795	0.57	+0.7
69,742	+		HMPREF1058_RS18795	0.57	+3.3
69,825	+		HMPREF1058_RS18795	0.67	-2.7
69,826	-		HMPREF1058_RS18795	0.67	+0.8
69,826	-		HMPREF1058_RS18795	0.67	-1.5
69,826	-		HMPREF1058_RS18795	0.67	+1.0
69,959	-		HMPREF1058_RS18795	0.83	+1.3
69,964	+		HMPREF1058_RS18795	0.83	-0.4
69,965	-		HMPREF1058_RS18795	0.83	+1.3
69,968	+		HMPREF1058_RS18795	0.84	+0.8
69,968	+		HMPREF1058_RS18795	0.84	+0.9
69,968	+		HMPREF1058_RS18795	0.84	+0.6
69,968	+		HMPREF1058_RS18795	0.84	-0.1
69,969	-		HMPREF1058_RS18795	0.84	-0.3
69,991	-		HMPREF1058_RS18795	0.86	+0.3
70,025	+				+0.7
70,025	+				+1.5
70,032	+				+0.9
70,040	+				-0.4
70,093	+				+0.6
70,094	-				-0.0
70,098	+				+2.3
70,099	-				+2.0
70,103	+				-2.3
70,117	-				-0.0
70,122	+				+0.1
70,122	+				+0.7
70,123	-				+1.2
70,123	-				+2.2
70,134	-				+1.4
70,202	-		HMPREF1058_RS18790	0.12	-0.4
70,203	+		HMPREF1058_RS18790	0.12	+1.8
70,215	+		HMPREF1058_RS18790	0.14	+1.4
70,272	-		HMPREF1058_RS18790	0.23	+2.6
70,272	-		HMPREF1058_RS18790	0.23	+1.6
70,272	-		HMPREF1058_RS18790	0.23	-0.3
70,376	+		HMPREF1058_RS18790	0.40	+1.6
70,377	-		HMPREF1058_RS18790	0.40	-2.0
70,553	+		HMPREF1058_RS18790	0.68	+0.7
70,678	+		HMPREF1058_RS18790	0.88	+1.1
70,678	+		HMPREF1058_RS18790	0.88	+1.4
70,733	-				+0.0
70,733	-				+1.2
70,736	+				+0.8
70,753	+				+1.0
70,757	+				+1.1
70,759	+				-1.3
70,763	+				-0.5
70,800	-				+0.2
70,853	+		HMPREF1058_RS18785	0.13	+0.0
70,904	+		HMPREF1058_RS18785	0.21	+0.6
70,996	-		HMPREF1058_RS18785	0.35	+1.0
71,063	+		HMPREF1058_RS18785	0.45	-0.8
71,063	+		HMPREF1058_RS18785	0.45	-2.5
71,110	-		HMPREF1058_RS18785	0.53	-0.8
71,110	-		HMPREF1058_RS18785	0.53	-0.1
71,127	-		HMPREF1058_RS18785	0.55	+1.5
71,132	+		HMPREF1058_RS18785	0.56	+0.5
71,133	-		HMPREF1058_RS18785	0.56	+0.2
71,219	+		HMPREF1058_RS18785	0.70	-1.2
71,236	+		HMPREF1058_RS18785	0.72	+0.5
71,237	-				+3.0
71,255	-		HMPREF1058_RS18785	0.75	-1.4
71,255	-		HMPREF1058_RS18785	0.75	-0.2
71,303	+		HMPREF1058_RS18785	0.83	-1.7
71,303	+		HMPREF1058_RS18785	0.83	+0.7
71,304	-		HMPREF1058_RS18785	0.83	-0.5
71,306	-		HMPREF1058_RS18785	0.83	-0.4
71,306	-		HMPREF1058_RS18785	0.83	+2.0
71,306	-		HMPREF1058_RS18785	0.83	-0.2
71,324	-		HMPREF1058_RS18785	0.86	-0.6
71,324	-		HMPREF1058_RS18785	0.86	+1.0
71,324	-		HMPREF1058_RS18785	0.86	-1.0
71,414	+				+0.4
71,433	+				-0.0
71,433	+				+0.3
71,435	+				-0.0
71,437	+				+1.0
71,438	-				-0.1
71,438	-				-0.9
71,438	-				+0.5
71,438	-				-1.5
71,440	+				+0.7
71,441	-				+0.3
71,632	+				-0.2
71,632	+				-1.9
71,632	+				+0.6
71,643	+				-1.0
71,663	+				+0.9
71,672	+				+0.4
71,672	+				+0.3
71,672	+				+0.5
71,673	-				-0.6
71,673	-				-1.6
71,674	+				+1.5
71,674	+				-1.1
71,674	+				-0.6
71,675	-				+1.6
71,676	+				+0.6
71,677	-				-0.9
71,677	-				-0.8
71,677	-				-0.9
71,677	-				-0.0
71,677	-				-1.2
71,691	-				-0.5
71,699	-				+0.2
71,747	+		HMPREF1058_RS18780	0.11	+1.5