Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18705 and HMPREF1058_RS18700 are separated by 250 nucleotides HMPREF1058_RS18700 and HMPREF1058_RS18695 are separated by 87 nucleotides HMPREF1058_RS18695 and HMPREF1058_RS18690 are separated by 2 nucleotides
HMPREF1058_RS18705: HMPREF1058_RS18705 - AAA family ATPase, at 96,448 to 98,070
_RS18705
HMPREF1058_RS18700: HMPREF1058_RS18700 - class I SAM-dependent methyltransferase, at 98,321 to 99,055
_RS18700
HMPREF1058_RS18695: HMPREF1058_RS18695 - F0F1 ATP synthase subunit gamma, at 99,143 to 100,012
_RS18695
HMPREF1058_RS18690: HMPREF1058_RS18690 - F0F1 ATP synthase subunit alpha, at 100,015 to 101,607
_RS18690
Position (kb) 98
99
100 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 97.345 kb on + strand, within HMPREF1058_RS18705 at 97.356 kb on + strand, within HMPREF1058_RS18705 at 97.357 kb on - strand, within HMPREF1058_RS18705 at 97.402 kb on - strand, within HMPREF1058_RS18705 at 97.790 kb on + strand, within HMPREF1058_RS18705 at 97.790 kb on + strand, within HMPREF1058_RS18705 at 97.790 kb on + strand, within HMPREF1058_RS18705 at 97.790 kb on + strand, within HMPREF1058_RS18705 at 97.790 kb on + strand at 97.791 kb on - strand, within HMPREF1058_RS18705 at 97.791 kb on - strand, within HMPREF1058_RS18705 at 97.794 kb on + strand, within HMPREF1058_RS18705 at 97.926 kb on + strand at 97.926 kb on + strand at 97.998 kb on + strand at 97.999 kb on - strand at 98.047 kb on + strand at 98.064 kb on + strand at 98.065 kb on - strand at 98.084 kb on + strand at 98.098 kb on + strand at 98.159 kb on + strand at 98.160 kb on - strand at 98.160 kb on - strand at 98.177 kb on - strand at 98.213 kb on + strand at 98.213 kb on + strand at 98.223 kb on - strand at 98.228 kb on - strand at 98.228 kb on - strand at 98.261 kb on + strand at 98.264 kb on + strand at 98.401 kb on + strand, within HMPREF1058_RS18700 at 98.401 kb on + strand, within HMPREF1058_RS18700 at 98.402 kb on - strand, within HMPREF1058_RS18700 at 98.406 kb on + strand, within HMPREF1058_RS18700 at 98.407 kb on - strand, within HMPREF1058_RS18700 at 98.586 kb on + strand, within HMPREF1058_RS18700 at 98.616 kb on + strand, within HMPREF1058_RS18700 at 98.622 kb on + strand, within HMPREF1058_RS18700 at 98.797 kb on + strand, within HMPREF1058_RS18700 at 98.798 kb on - strand, within HMPREF1058_RS18700 at 98.942 kb on + strand, within HMPREF1058_RS18700 at 99.020 kb on + strand at 99.027 kb on - strand at 99.027 kb on - strand at 99.060 kb on + strand at 99.063 kb on - strand at 99.165 kb on - strand at 99.165 kb on - strand at 99.206 kb on - strand at 99.369 kb on - strand, within HMPREF1058_RS18695 at 99.470 kb on + strand, within HMPREF1058_RS18695 at 99.471 kb on - strand, within HMPREF1058_RS18695 at 99.515 kb on + strand, within HMPREF1058_RS18695 at 99.696 kb on + strand, within HMPREF1058_RS18695 at 99.697 kb on - strand, within HMPREF1058_RS18695 at 99.731 kb on - strand, within HMPREF1058_RS18695 at 99.968 kb on - strand at 99.971 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 97,345 + HMPREF1058_RS18705 0.55 +0.7 97,356 + HMPREF1058_RS18705 0.56 -0.4 97,357 - HMPREF1058_RS18705 0.56 -0.9 97,402 - HMPREF1058_RS18705 0.59 -0.5 97,790 + HMPREF1058_RS18705 0.83 -1.3 97,790 + HMPREF1058_RS18705 0.83 -0.7 97,790 + HMPREF1058_RS18705 0.83 +0.4 97,790 + HMPREF1058_RS18705 0.83 +2.3 97,790 + +0.2 97,791 - HMPREF1058_RS18705 0.83 -0.8 97,791 - HMPREF1058_RS18705 0.83 +0.4 97,794 + HMPREF1058_RS18705 0.83 -2.9 97,926 + -1.6 97,926 + +1.2 97,998 + -0.2 97,999 - -1.3 98,047 + +1.1 98,064 + +0.1 98,065 - +0.0 98,084 + +0.7 98,098 + -0.9 98,159 + +0.3 98,160 - +0.4 98,160 - -1.3 98,177 - -0.2 98,213 + +0.0 98,213 + -1.0 98,223 - +0.2 98,228 - +0.4 98,228 - -0.9 98,261 + -0.1 98,264 + +0.2 98,401 + HMPREF1058_RS18700 0.11 +0.8 98,401 + HMPREF1058_RS18700 0.11 +0.5 98,402 - HMPREF1058_RS18700 0.11 +1.8 98,406 + HMPREF1058_RS18700 0.12 +0.9 98,407 - HMPREF1058_RS18700 0.12 +3.0 98,586 + HMPREF1058_RS18700 0.36 +0.6 98,616 + HMPREF1058_RS18700 0.40 -1.3 98,622 + HMPREF1058_RS18700 0.41 -1.7 98,797 + HMPREF1058_RS18700 0.65 +0.4 98,798 - HMPREF1058_RS18700 0.65 +1.9 98,942 + HMPREF1058_RS18700 0.84 -1.1 99,020 + +0.0 99,027 - +0.2 99,027 - +2.6 99,060 + -1.4 99,063 - +0.2 99,165 - +0.7 99,165 - -1.1 99,206 - +0.2 99,369 - HMPREF1058_RS18695 0.26 +0.6 99,470 + HMPREF1058_RS18695 0.38 +0.2 99,471 - HMPREF1058_RS18695 0.38 +1.0 99,515 + HMPREF1058_RS18695 0.43 +0.3 99,696 + HMPREF1058_RS18695 0.64 +1.0 99,697 - HMPREF1058_RS18695 0.64 -0.6 99,731 - HMPREF1058_RS18695 0.68 -0.6 99,968 - +0.3 99,971 + -0.2
Or see this region's nucleotide sequence