Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18585 and HMPREF1058_RS18580 are separated by 30 nucleotides HMPREF1058_RS18580 and HMPREF1058_RS18575 are separated by 230 nucleotides HMPREF1058_RS18575 and HMPREF1058_RS18570 overlap by 8 nucleotides HMPREF1058_RS18570 and HMPREF1058_RS18565 overlap by 4 nucleotides HMPREF1058_RS18565 and HMPREF1058_RS18560 are separated by 20 nucleotides
HMPREF1058_RS18585: HMPREF1058_RS18585 - tRNA-Asp, at 124,672 to 124,745
_RS18585
HMPREF1058_RS18580: HMPREF1058_RS18580 - tRNA-Asp, at 124,776 to 124,849
_RS18580
HMPREF1058_RS18575: HMPREF1058_RS18575 - YqgE/AlgH family protein, at 125,080 to 125,670
_RS18575
HMPREF1058_RS18570: HMPREF1058_RS18570 - GNAT family N-acetyltransferase, at 125,663 to 126,199
_RS18570
HMPREF1058_RS18565: HMPREF1058_RS18565 - hypothetical protein, at 126,196 to 126,666
_RS18565
HMPREF1058_RS18560: HMPREF1058_RS18560 - recombination protein RecR, at 126,687 to 127,304
_RS18560
Position (kb) 125
126
127 Strain fitness (log2 ratio) -2
-1
0
1
2 at 124.979 kb on + strand at 124.984 kb on + strand at 125.037 kb on + strand at 125.038 kb on - strand at 125.043 kb on - strand at 125.046 kb on + strand at 125.046 kb on + strand at 125.047 kb on - strand at 125.047 kb on - strand at 125.047 kb on - strand at 125.047 kb on - strand at 125.048 kb on + strand at 125.176 kb on - strand, within HMPREF1058_RS18575 at 125.220 kb on + strand, within HMPREF1058_RS18575 at 125.226 kb on + strand, within HMPREF1058_RS18575 at 125.312 kb on - strand, within HMPREF1058_RS18575 at 125.434 kb on + strand, within HMPREF1058_RS18575 at 125.434 kb on + strand, within HMPREF1058_RS18575 at 125.435 kb on - strand, within HMPREF1058_RS18575 at 125.435 kb on - strand, within HMPREF1058_RS18575 at 125.436 kb on + strand, within HMPREF1058_RS18575 at 125.437 kb on - strand, within HMPREF1058_RS18575 at 125.437 kb on - strand, within HMPREF1058_RS18575 at 125.523 kb on - strand, within HMPREF1058_RS18575 at 125.591 kb on + strand, within HMPREF1058_RS18575 at 125.720 kb on - strand, within HMPREF1058_RS18570 at 125.806 kb on - strand, within HMPREF1058_RS18570 at 125.806 kb on - strand, within HMPREF1058_RS18570 at 125.952 kb on - strand, within HMPREF1058_RS18570 at 126.041 kb on + strand at 126.042 kb on - strand, within HMPREF1058_RS18570 at 126.045 kb on + strand, within HMPREF1058_RS18570 at 126.046 kb on - strand, within HMPREF1058_RS18570 at 126.382 kb on + strand, within HMPREF1058_RS18565 at 126.525 kb on - strand, within HMPREF1058_RS18565 at 126.525 kb on - strand, within HMPREF1058_RS18565 at 126.620 kb on + strand at 126.620 kb on + strand at 126.621 kb on - strand at 126.833 kb on - strand, within HMPREF1058_RS18560 at 126.925 kb on - strand, within HMPREF1058_RS18560 at 126.945 kb on + strand, within HMPREF1058_RS18560 at 126.985 kb on + strand, within HMPREF1058_RS18560 at 127.035 kb on - strand, within HMPREF1058_RS18560 at 127.085 kb on + strand, within HMPREF1058_RS18560 at 127.086 kb on - strand, within HMPREF1058_RS18560 at 127.107 kb on + strand, within HMPREF1058_RS18560 at 127.109 kb on + strand, within HMPREF1058_RS18560 at 127.110 kb on - strand, within HMPREF1058_RS18560 at 127.125 kb on - strand at 127.163 kb on + strand, within HMPREF1058_RS18560
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 124,979 + +0.3 124,984 + -1.1 125,037 + -0.0 125,038 - +1.3 125,043 - -0.1 125,046 + -1.1 125,046 + +1.0 125,047 - +0.3 125,047 - -0.4 125,047 - +0.3 125,047 - +0.4 125,048 + -2.3 125,176 - HMPREF1058_RS18575 0.16 -1.2 125,220 + HMPREF1058_RS18575 0.24 -0.1 125,226 + HMPREF1058_RS18575 0.25 -0.7 125,312 - HMPREF1058_RS18575 0.39 +0.1 125,434 + HMPREF1058_RS18575 0.60 -1.5 125,434 + HMPREF1058_RS18575 0.60 -0.1 125,435 - HMPREF1058_RS18575 0.60 -1.2 125,435 - HMPREF1058_RS18575 0.60 -0.4 125,436 + HMPREF1058_RS18575 0.60 -0.2 125,437 - HMPREF1058_RS18575 0.60 -0.2 125,437 - HMPREF1058_RS18575 0.60 -1.7 125,523 - HMPREF1058_RS18575 0.75 -0.7 125,591 + HMPREF1058_RS18575 0.86 +0.7 125,720 - HMPREF1058_RS18570 0.11 -1.0 125,806 - HMPREF1058_RS18570 0.27 +0.2 125,806 - HMPREF1058_RS18570 0.27 +1.0 125,952 - HMPREF1058_RS18570 0.54 +0.5 126,041 + -0.0 126,042 - HMPREF1058_RS18570 0.71 +1.9 126,045 + HMPREF1058_RS18570 0.71 +1.0 126,046 - HMPREF1058_RS18570 0.71 +1.2 126,382 + HMPREF1058_RS18565 0.39 +0.4 126,525 - HMPREF1058_RS18565 0.70 +1.5 126,525 - HMPREF1058_RS18565 0.70 +0.6 126,620 + +1.1 126,620 + +1.7 126,621 - +0.3 126,833 - HMPREF1058_RS18560 0.24 -0.7 126,925 - HMPREF1058_RS18560 0.39 -0.5 126,945 + HMPREF1058_RS18560 0.42 -0.7 126,985 + HMPREF1058_RS18560 0.48 -0.0 127,035 - HMPREF1058_RS18560 0.56 +1.0 127,085 + HMPREF1058_RS18560 0.64 +1.7 127,086 - HMPREF1058_RS18560 0.65 -0.4 127,107 + HMPREF1058_RS18560 0.68 +0.8 127,109 + HMPREF1058_RS18560 0.68 -0.6 127,110 - HMPREF1058_RS18560 0.68 +0.1 127,125 - +0.2 127,163 + HMPREF1058_RS18560 0.77 +1.4
Or see this region's nucleotide sequence