Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18180 and HMPREF1058_RS18175 are separated by 4 nucleotides HMPREF1058_RS18175 and HMPREF1058_RS18170 overlap by 35 nucleotides HMPREF1058_RS18170 and HMPREF1058_RS18165 are separated by 153 nucleotides
HMPREF1058_RS18180: HMPREF1058_RS18180 - hypothetical protein, at 240,475 to 241,200
_RS18180
HMPREF1058_RS18175: HMPREF1058_RS18175 - relaxase/mobilization nuclease domain-containing protein, at 241,205 to 242,131
_RS18175
HMPREF1058_RS18170: HMPREF1058_RS18170 - MobC family plasmid mobilization relaxosome protein, at 242,097 to 242,480
_RS18170
HMPREF1058_RS18165: HMPREF1058_RS18165 - toprim domain-containing protein, at 242,634 to 243,674
_RS18165
Position (kb) 241
242
243 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 240.205 kb on + strand at 240.288 kb on + strand at 240.289 kb on - strand at 240.289 kb on - strand at 240.289 kb on - strand at 240.289 kb on - strand at 240.331 kb on - strand at 240.428 kb on - strand at 240.455 kb on + strand at 240.455 kb on + strand at 240.455 kb on + strand at 240.456 kb on - strand at 240.456 kb on - strand at 240.456 kb on - strand at 240.701 kb on + strand, within HMPREF1058_RS18180 at 240.702 kb on - strand, within HMPREF1058_RS18180 at 240.706 kb on + strand, within HMPREF1058_RS18180 at 240.707 kb on - strand, within HMPREF1058_RS18180 at 240.708 kb on + strand, within HMPREF1058_RS18180 at 240.781 kb on - strand, within HMPREF1058_RS18180 at 240.781 kb on - strand, within HMPREF1058_RS18180 at 240.898 kb on + strand, within HMPREF1058_RS18180 at 240.952 kb on + strand, within HMPREF1058_RS18180 at 240.952 kb on + strand, within HMPREF1058_RS18180 at 240.955 kb on - strand, within HMPREF1058_RS18180 at 241.200 kb on + strand at 241.206 kb on + strand at 241.208 kb on + strand at 241.214 kb on - strand at 241.214 kb on - strand at 241.328 kb on - strand, within HMPREF1058_RS18175 at 241.426 kb on + strand, within HMPREF1058_RS18175 at 241.877 kb on - strand, within HMPREF1058_RS18175 at 241.879 kb on - strand at 241.895 kb on + strand, within HMPREF1058_RS18175 at 241.971 kb on - strand, within HMPREF1058_RS18175 at 241.997 kb on - strand, within HMPREF1058_RS18175 at 242.054 kb on + strand at 242.054 kb on + strand at 242.055 kb on - strand at 242.060 kb on + strand at 242.082 kb on + strand at 242.145 kb on + strand, within HMPREF1058_RS18170 at 242.333 kb on - strand, within HMPREF1058_RS18170 at 242.380 kb on + strand, within HMPREF1058_RS18170 at 242.819 kb on - strand, within HMPREF1058_RS18165 at 242.980 kb on + strand, within HMPREF1058_RS18165 at 242.981 kb on - strand, within HMPREF1058_RS18165 at 243.110 kb on + strand, within HMPREF1058_RS18165 at 243.111 kb on - strand, within HMPREF1058_RS18165
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 240,205 + +0.5 240,288 + -0.3 240,289 - -0.4 240,289 - +0.6 240,289 - -0.5 240,289 - -0.5 240,331 - -0.5 240,428 - -0.0 240,455 + +1.4 240,455 + -2.0 240,455 + +5.5 240,456 - +0.1 240,456 - -1.0 240,456 - -1.3 240,701 + HMPREF1058_RS18180 0.31 +0.8 240,702 - HMPREF1058_RS18180 0.31 -0.7 240,706 + HMPREF1058_RS18180 0.32 +0.7 240,707 - HMPREF1058_RS18180 0.32 -0.7 240,708 + HMPREF1058_RS18180 0.32 -0.2 240,781 - HMPREF1058_RS18180 0.42 -0.3 240,781 - HMPREF1058_RS18180 0.42 +0.9 240,898 + HMPREF1058_RS18180 0.58 -0.6 240,952 + HMPREF1058_RS18180 0.66 +0.0 240,952 + HMPREF1058_RS18180 0.66 -1.2 240,955 - HMPREF1058_RS18180 0.66 -0.5 241,200 + +0.7 241,206 + +0.8 241,208 + -0.9 241,214 - +0.2 241,214 - +0.5 241,328 - HMPREF1058_RS18175 0.13 +0.9 241,426 + HMPREF1058_RS18175 0.24 +1.0 241,877 - HMPREF1058_RS18175 0.72 +2.0 241,879 - -1.2 241,895 + HMPREF1058_RS18175 0.74 +0.2 241,971 - HMPREF1058_RS18175 0.83 -0.4 241,997 - HMPREF1058_RS18175 0.85 +0.6 242,054 + -0.0 242,054 + -1.6 242,055 - -1.0 242,060 + +1.2 242,082 + -1.3 242,145 + HMPREF1058_RS18170 0.12 -0.4 242,333 - HMPREF1058_RS18170 0.61 -1.5 242,380 + HMPREF1058_RS18170 0.74 +0.6 242,819 - HMPREF1058_RS18165 0.18 -0.6 242,980 + HMPREF1058_RS18165 0.33 -2.1 242,981 - HMPREF1058_RS18165 0.33 -0.8 243,110 + HMPREF1058_RS18165 0.46 -0.6 243,111 - HMPREF1058_RS18165 0.46 +0.6
Or see this region's nucleotide sequence