Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17810 and HMPREF1058_RS17805 are separated by 52 nucleotides HMPREF1058_RS17805 and HMPREF1058_RS17800 are separated by 89 nucleotides HMPREF1058_RS17800 and HMPREF1058_RS17795 overlap by 4 nucleotides
HMPREF1058_RS17810: HMPREF1058_RS17810 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 330,477 to 331,298
_RS17810
HMPREF1058_RS17805: HMPREF1058_RS17805 - HAD family hydrolase, at 331,351 to 332,001
_RS17805
HMPREF1058_RS17800: HMPREF1058_RS17800 - MATE family efflux transporter, at 332,091 to 333,443
_RS17800
HMPREF1058_RS17795: HMPREF1058_RS17795 - potassium/proton antiporter, at 333,440 to 334,888
_RS17795
Position (kb) 332
333
334 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 331.363 kb on - strand at 331.426 kb on + strand, within HMPREF1058_RS17805 at 331.650 kb on + strand, within HMPREF1058_RS17805 at 331.651 kb on - strand, within HMPREF1058_RS17805 at 331.654 kb on + strand, within HMPREF1058_RS17805 at 331.655 kb on - strand, within HMPREF1058_RS17805 at 331.693 kb on - strand, within HMPREF1058_RS17805 at 331.693 kb on - strand, within HMPREF1058_RS17805 at 331.697 kb on - strand, within HMPREF1058_RS17805 at 331.697 kb on - strand, within HMPREF1058_RS17805 at 331.697 kb on - strand, within HMPREF1058_RS17805 at 331.756 kb on - strand, within HMPREF1058_RS17805 at 331.756 kb on - strand, within HMPREF1058_RS17805 at 331.838 kb on + strand, within HMPREF1058_RS17805 at 331.925 kb on - strand, within HMPREF1058_RS17805 at 331.926 kb on + strand, within HMPREF1058_RS17805 at 331.927 kb on - strand, within HMPREF1058_RS17805 at 331.927 kb on - strand, within HMPREF1058_RS17805 at 331.927 kb on - strand, within HMPREF1058_RS17805 at 331.929 kb on + strand, within HMPREF1058_RS17805 at 331.930 kb on - strand, within HMPREF1058_RS17805 at 331.932 kb on - strand, within HMPREF1058_RS17805 at 332.113 kb on + strand at 332.213 kb on - strand at 332.513 kb on + strand, within HMPREF1058_RS17800 at 332.513 kb on + strand, within HMPREF1058_RS17800 at 332.513 kb on + strand, within HMPREF1058_RS17800 at 332.514 kb on - strand, within HMPREF1058_RS17800 at 332.516 kb on - strand, within HMPREF1058_RS17800 at 332.538 kb on + strand, within HMPREF1058_RS17800 at 332.538 kb on + strand, within HMPREF1058_RS17800 at 332.539 kb on - strand, within HMPREF1058_RS17800 at 332.543 kb on - strand, within HMPREF1058_RS17800 at 332.562 kb on - strand, within HMPREF1058_RS17800 at 332.631 kb on - strand, within HMPREF1058_RS17800 at 332.756 kb on + strand, within HMPREF1058_RS17800 at 332.823 kb on - strand, within HMPREF1058_RS17800 at 332.867 kb on + strand, within HMPREF1058_RS17800 at 333.000 kb on + strand, within HMPREF1058_RS17800 at 333.003 kb on - strand, within HMPREF1058_RS17800 at 333.049 kb on - strand, within HMPREF1058_RS17800 at 333.126 kb on - strand, within HMPREF1058_RS17800 at 333.126 kb on - strand, within HMPREF1058_RS17800 at 333.149 kb on + strand, within HMPREF1058_RS17800 at 333.296 kb on - strand, within HMPREF1058_RS17800 at 333.311 kb on - strand at 333.313 kb on + strand at 333.314 kb on - strand at 333.440 kb on - strand at 333.483 kb on + strand at 333.496 kb on + strand at 333.496 kb on + strand at 333.535 kb on + strand at 333.641 kb on - strand, within HMPREF1058_RS17795 at 333.743 kb on - strand, within HMPREF1058_RS17795 at 333.743 kb on - strand, within HMPREF1058_RS17795 at 333.905 kb on - strand, within HMPREF1058_RS17795 at 333.956 kb on + strand, within HMPREF1058_RS17795 at 333.957 kb on - strand, within HMPREF1058_RS17795 at 333.957 kb on - strand, within HMPREF1058_RS17795 at 333.958 kb on + strand, within HMPREF1058_RS17795 at 333.958 kb on + strand, within HMPREF1058_RS17795 at 333.958 kb on + strand, within HMPREF1058_RS17795 at 333.964 kb on + strand, within HMPREF1058_RS17795 at 333.964 kb on + strand, within HMPREF1058_RS17795 at 333.965 kb on - strand, within HMPREF1058_RS17795 at 333.965 kb on - strand, within HMPREF1058_RS17795 at 334.133 kb on - strand, within HMPREF1058_RS17795 at 334.209 kb on - strand, within HMPREF1058_RS17795 at 334.213 kb on - strand, within HMPREF1058_RS17795 at 334.300 kb on + strand, within HMPREF1058_RS17795
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 331,363 - +2.6 331,426 + HMPREF1058_RS17805 0.12 -1.3 331,650 + HMPREF1058_RS17805 0.46 -1.3 331,651 - HMPREF1058_RS17805 0.46 +0.4 331,654 + HMPREF1058_RS17805 0.47 +1.1 331,655 - HMPREF1058_RS17805 0.47 +0.7 331,693 - HMPREF1058_RS17805 0.53 +0.1 331,693 - HMPREF1058_RS17805 0.53 +1.5 331,697 - HMPREF1058_RS17805 0.53 +1.0 331,697 - HMPREF1058_RS17805 0.53 +2.8 331,697 - HMPREF1058_RS17805 0.53 +2.3 331,756 - HMPREF1058_RS17805 0.62 +1.3 331,756 - HMPREF1058_RS17805 0.62 +2.4 331,838 + HMPREF1058_RS17805 0.75 +0.9 331,925 - HMPREF1058_RS17805 0.88 +0.9 331,926 + HMPREF1058_RS17805 0.88 -0.1 331,927 - HMPREF1058_RS17805 0.88 +2.4 331,927 - HMPREF1058_RS17805 0.88 +3.4 331,927 - HMPREF1058_RS17805 0.88 +1.4 331,929 + HMPREF1058_RS17805 0.89 -0.6 331,930 - HMPREF1058_RS17805 0.89 +4.2 331,932 - HMPREF1058_RS17805 0.89 +1.3 332,113 + +0.3 332,213 - +1.6 332,513 + HMPREF1058_RS17800 0.31 -0.3 332,513 + HMPREF1058_RS17800 0.31 +0.2 332,513 + HMPREF1058_RS17800 0.31 +0.1 332,514 - HMPREF1058_RS17800 0.31 +0.9 332,516 - HMPREF1058_RS17800 0.31 -0.6 332,538 + HMPREF1058_RS17800 0.33 -1.7 332,538 + HMPREF1058_RS17800 0.33 -0.1 332,539 - HMPREF1058_RS17800 0.33 +1.8 332,543 - HMPREF1058_RS17800 0.33 +1.0 332,562 - HMPREF1058_RS17800 0.35 +1.9 332,631 - HMPREF1058_RS17800 0.40 +0.6 332,756 + HMPREF1058_RS17800 0.49 +0.2 332,823 - HMPREF1058_RS17800 0.54 +0.4 332,867 + HMPREF1058_RS17800 0.57 +2.3 333,000 + HMPREF1058_RS17800 0.67 -0.5 333,003 - HMPREF1058_RS17800 0.67 +1.6 333,049 - HMPREF1058_RS17800 0.71 +0.3 333,126 - HMPREF1058_RS17800 0.76 -0.2 333,126 - HMPREF1058_RS17800 0.76 +0.2 333,149 + HMPREF1058_RS17800 0.78 -1.1 333,296 - HMPREF1058_RS17800 0.89 +0.6 333,311 - +0.6 333,313 + +2.9 333,314 - +0.6 333,440 - -0.4 333,483 + +0.9 333,496 + -0.5 333,496 + -0.7 333,535 + +0.1 333,641 - HMPREF1058_RS17795 0.14 -0.0 333,743 - HMPREF1058_RS17795 0.21 +0.6 333,743 - HMPREF1058_RS17795 0.21 +0.5 333,905 - HMPREF1058_RS17795 0.32 -1.3 333,956 + HMPREF1058_RS17795 0.36 +1.4 333,957 - HMPREF1058_RS17795 0.36 +0.8 333,957 - HMPREF1058_RS17795 0.36 +0.6 333,958 + HMPREF1058_RS17795 0.36 -1.2 333,958 + HMPREF1058_RS17795 0.36 +1.7 333,958 + HMPREF1058_RS17795 0.36 +1.2 333,964 + HMPREF1058_RS17795 0.36 -0.2 333,964 + HMPREF1058_RS17795 0.36 -0.6 333,965 - HMPREF1058_RS17795 0.36 -0.6 333,965 - HMPREF1058_RS17795 0.36 +2.3 334,133 - HMPREF1058_RS17795 0.48 -1.0 334,209 - HMPREF1058_RS17795 0.53 -2.7 334,213 - HMPREF1058_RS17795 0.53 -1.3 334,300 + HMPREF1058_RS17795 0.59 -0.4
Or see this region's nucleotide sequence