Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS20425 and HMPREF1058_RS17660 are separated by 140 nucleotides HMPREF1058_RS17660 and HMPREF1058_RS17655 are separated by 70 nucleotides HMPREF1058_RS17655 and HMPREF1058_RS17650 overlap by 11 nucleotides HMPREF1058_RS17650 and HMPREF1058_RS17645 are separated by 29 nucleotides
HMPREF1058_RS20425: HMPREF1058_RS20425 - left-handed beta-roll domain-containing protein, at 373,948 to 374,070
_RS20425
HMPREF1058_RS17660: HMPREF1058_RS17660 - tRNA-Arg, at 374,211 to 374,284
_RS17660
HMPREF1058_RS17655: HMPREF1058_RS17655 - AbgT family transporter, at 374,355 to 375,071
_RS17655
HMPREF1058_RS17650: HMPREF1058_RS17650 - response regulator transcription factor, at 375,061 to 375,789
_RS17650
HMPREF1058_RS17645: HMPREF1058_RS17645 - DUF5113 domain-containing protein, at 375,819 to 380,216
_RS17645
Position (kb) 375
376 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 374.105 kb on + strand at 374.105 kb on + strand at 374.105 kb on + strand at 374.108 kb on - strand at 374.108 kb on - strand at 374.431 kb on - strand, within HMPREF1058_RS17655 at 374.434 kb on + strand, within HMPREF1058_RS17655 at 374.560 kb on - strand, within HMPREF1058_RS17655 at 374.567 kb on + strand, within HMPREF1058_RS17655 at 374.567 kb on + strand, within HMPREF1058_RS17655 at 374.642 kb on - strand, within HMPREF1058_RS17655 at 374.642 kb on - strand, within HMPREF1058_RS17655 at 374.731 kb on - strand, within HMPREF1058_RS17655 at 374.735 kb on + strand, within HMPREF1058_RS17655 at 374.735 kb on + strand, within HMPREF1058_RS17655 at 374.749 kb on - strand, within HMPREF1058_RS17655 at 374.750 kb on + strand, within HMPREF1058_RS17655 at 374.750 kb on + strand, within HMPREF1058_RS17655 at 374.751 kb on - strand, within HMPREF1058_RS17655 at 374.984 kb on + strand, within HMPREF1058_RS17655 at 375.055 kb on + strand at 375.084 kb on + strand at 375.290 kb on + strand, within HMPREF1058_RS17650 at 375.291 kb on - strand, within HMPREF1058_RS17650 at 375.300 kb on + strand, within HMPREF1058_RS17650 at 375.425 kb on - strand, within HMPREF1058_RS17650 at 375.466 kb on - strand, within HMPREF1058_RS17650 at 375.466 kb on - strand, within HMPREF1058_RS17650 at 375.514 kb on + strand, within HMPREF1058_RS17650 at 375.736 kb on + strand at 375.757 kb on + strand at 375.792 kb on + strand at 376.149 kb on - strand at 376.242 kb on + strand at 376.302 kb on - strand, within HMPREF1058_RS17645 at 376.348 kb on - strand, within HMPREF1058_RS17645 at 376.355 kb on + strand, within HMPREF1058_RS17645 at 376.361 kb on - strand, within HMPREF1058_RS17645 at 376.573 kb on - strand, within HMPREF1058_RS17645 at 376.612 kb on + strand, within HMPREF1058_RS17645 at 376.612 kb on + strand, within HMPREF1058_RS17645 at 376.612 kb on + strand, within HMPREF1058_RS17645 at 376.615 kb on - strand, within HMPREF1058_RS17645
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 374,105 + +0.3 374,105 + +0.3 374,105 + -1.9 374,108 - -1.0 374,108 - +0.3 374,431 - HMPREF1058_RS17655 0.11 -0.7 374,434 + HMPREF1058_RS17655 0.11 +0.3 374,560 - HMPREF1058_RS17655 0.29 -0.1 374,567 + HMPREF1058_RS17655 0.30 -0.4 374,567 + HMPREF1058_RS17655 0.30 +0.6 374,642 - HMPREF1058_RS17655 0.40 +0.0 374,642 - HMPREF1058_RS17655 0.40 +0.6 374,731 - HMPREF1058_RS17655 0.52 +0.1 374,735 + HMPREF1058_RS17655 0.53 +1.5 374,735 + HMPREF1058_RS17655 0.53 -0.7 374,749 - HMPREF1058_RS17655 0.55 +0.3 374,750 + HMPREF1058_RS17655 0.55 +1.4 374,750 + HMPREF1058_RS17655 0.55 -0.3 374,751 - HMPREF1058_RS17655 0.55 -0.7 374,984 + HMPREF1058_RS17655 0.88 +1.6 375,055 + +0.5 375,084 + +1.0 375,290 + HMPREF1058_RS17650 0.31 +0.9 375,291 - HMPREF1058_RS17650 0.32 +1.2 375,300 + HMPREF1058_RS17650 0.33 +1.1 375,425 - HMPREF1058_RS17650 0.50 +0.6 375,466 - HMPREF1058_RS17650 0.56 +0.4 375,466 - HMPREF1058_RS17650 0.56 +0.9 375,514 + HMPREF1058_RS17650 0.62 +0.4 375,736 + +0.3 375,757 + +2.9 375,792 + -0.6 376,149 - -3.4 376,242 + +1.1 376,302 - HMPREF1058_RS17645 0.11 +0.2 376,348 - HMPREF1058_RS17645 0.12 -0.5 376,355 + HMPREF1058_RS17645 0.12 -0.9 376,361 - HMPREF1058_RS17645 0.12 -2.3 376,573 - HMPREF1058_RS17645 0.17 -1.2 376,612 + HMPREF1058_RS17645 0.18 -1.6 376,612 + HMPREF1058_RS17645 0.18 +0.7 376,612 + HMPREF1058_RS17645 0.18 +2.1 376,615 - HMPREF1058_RS17645 0.18 -3.6
Or see this region's nucleotide sequence