Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16725 and HMPREF1058_RS16720 are separated by 12 nucleotides HMPREF1058_RS16720 and HMPREF1058_RS16715 are separated by 89 nucleotides HMPREF1058_RS16715 and HMPREF1058_RS16710 are separated by 205 nucleotides
HMPREF1058_RS16725: HMPREF1058_RS16725 - dipeptidase, at 609,417 to 610,769
_RS16725
HMPREF1058_RS16720: HMPREF1058_RS16720 - nitroreductase family protein, at 610,782 to 611,411
_RS16720
HMPREF1058_RS16715: HMPREF1058_RS16715 - hypothetical protein, at 611,501 to 611,749
_RS16715
HMPREF1058_RS16710: HMPREF1058_RS16710 - hypothetical protein, at 611,955 to 612,278
_RS16710
Position (kb) 610
611
612 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 609.811 kb on - strand, within HMPREF1058_RS16725 at 609.814 kb on + strand at 609.893 kb on + strand, within HMPREF1058_RS16725 at 609.911 kb on + strand, within HMPREF1058_RS16725 at 609.911 kb on + strand, within HMPREF1058_RS16725 at 609.911 kb on + strand, within HMPREF1058_RS16725 at 609.935 kb on - strand, within HMPREF1058_RS16725 at 610.082 kb on + strand, within HMPREF1058_RS16725 at 610.089 kb on - strand, within HMPREF1058_RS16725 at 610.100 kb on + strand, within HMPREF1058_RS16725 at 610.101 kb on - strand, within HMPREF1058_RS16725 at 610.162 kb on + strand, within HMPREF1058_RS16725 at 610.163 kb on - strand, within HMPREF1058_RS16725 at 610.243 kb on + strand, within HMPREF1058_RS16725 at 610.287 kb on - strand, within HMPREF1058_RS16725 at 610.287 kb on - strand, within HMPREF1058_RS16725 at 610.287 kb on - strand, within HMPREF1058_RS16725 at 610.334 kb on + strand, within HMPREF1058_RS16725 at 610.334 kb on + strand, within HMPREF1058_RS16725 at 610.334 kb on + strand, within HMPREF1058_RS16725 at 610.357 kb on + strand, within HMPREF1058_RS16725 at 610.357 kb on + strand, within HMPREF1058_RS16725 at 610.358 kb on - strand, within HMPREF1058_RS16725 at 610.375 kb on - strand, within HMPREF1058_RS16725 at 610.421 kb on - strand, within HMPREF1058_RS16725 at 610.444 kb on - strand, within HMPREF1058_RS16725 at 610.467 kb on + strand, within HMPREF1058_RS16725 at 610.471 kb on + strand, within HMPREF1058_RS16725 at 610.471 kb on + strand, within HMPREF1058_RS16725 at 610.471 kb on + strand, within HMPREF1058_RS16725 at 610.471 kb on + strand, within HMPREF1058_RS16725 at 610.472 kb on - strand, within HMPREF1058_RS16725 at 610.513 kb on + strand, within HMPREF1058_RS16725 at 610.513 kb on + strand, within HMPREF1058_RS16725 at 610.513 kb on + strand, within HMPREF1058_RS16725 at 610.513 kb on + strand, within HMPREF1058_RS16725 at 610.513 kb on + strand, within HMPREF1058_RS16725 at 610.514 kb on - strand, within HMPREF1058_RS16725 at 610.514 kb on - strand, within HMPREF1058_RS16725 at 610.514 kb on - strand, within HMPREF1058_RS16725 at 610.608 kb on - strand, within HMPREF1058_RS16725 at 610.613 kb on + strand, within HMPREF1058_RS16725 at 610.614 kb on - strand, within HMPREF1058_RS16725 at 610.643 kb on + strand at 610.645 kb on + strand at 610.645 kb on + strand at 610.645 kb on + strand at 610.646 kb on - strand at 610.721 kb on - strand at 610.777 kb on + strand at 610.841 kb on - strand at 610.904 kb on - strand, within HMPREF1058_RS16720 at 610.911 kb on - strand, within HMPREF1058_RS16720 at 610.938 kb on + strand, within HMPREF1058_RS16720 at 610.940 kb on + strand, within HMPREF1058_RS16720 at 610.941 kb on - strand, within HMPREF1058_RS16720 at 610.975 kb on + strand, within HMPREF1058_RS16720 at 611.041 kb on + strand, within HMPREF1058_RS16720 at 611.041 kb on + strand, within HMPREF1058_RS16720 at 611.085 kb on + strand, within HMPREF1058_RS16720 at 611.285 kb on - strand, within HMPREF1058_RS16720 at 611.312 kb on + strand, within HMPREF1058_RS16720 at 611.390 kb on + strand at 611.453 kb on + strand at 611.455 kb on + strand at 611.543 kb on + strand, within HMPREF1058_RS16715 at 611.652 kb on - strand, within HMPREF1058_RS16715 at 611.735 kb on + strand at 611.749 kb on + strand at 611.766 kb on + strand at 611.796 kb on - strand at 611.803 kb on + strand at 611.803 kb on + strand at 611.804 kb on - strand at 611.804 kb on - strand at 611.804 kb on - strand at 611.804 kb on - strand at 611.805 kb on + strand at 611.806 kb on - strand at 611.844 kb on + strand at 611.845 kb on - strand at 611.847 kb on - strand at 611.847 kb on - strand at 611.916 kb on + strand at 611.918 kb on + strand at 611.919 kb on - strand at 611.940 kb on - strand at 611.942 kb on - strand at 611.944 kb on + strand at 611.994 kb on + strand, within HMPREF1058_RS16710 at 612.011 kb on + strand, within HMPREF1058_RS16710 at 612.033 kb on + strand, within HMPREF1058_RS16710 at 612.037 kb on + strand, within HMPREF1058_RS16710 at 612.037 kb on + strand, within HMPREF1058_RS16710 at 612.037 kb on + strand, within HMPREF1058_RS16710 at 612.038 kb on - strand, within HMPREF1058_RS16710 at 612.038 kb on - strand, within HMPREF1058_RS16710 at 612.038 kb on - strand, within HMPREF1058_RS16710 at 612.038 kb on - strand, within HMPREF1058_RS16710 at 612.039 kb on + strand, within HMPREF1058_RS16710 at 612.039 kb on + strand, within HMPREF1058_RS16710 at 612.040 kb on - strand, within HMPREF1058_RS16710 at 612.040 kb on - strand, within HMPREF1058_RS16710 at 612.040 kb on - strand, within HMPREF1058_RS16710 at 612.040 kb on - strand, within HMPREF1058_RS16710 at 612.042 kb on + strand, within HMPREF1058_RS16710 at 612.043 kb on - strand, within HMPREF1058_RS16710 at 612.043 kb on - strand, within HMPREF1058_RS16710 at 612.047 kb on + strand, within HMPREF1058_RS16710 at 612.047 kb on + strand, within HMPREF1058_RS16710 at 612.048 kb on - strand, within HMPREF1058_RS16710 at 612.159 kb on + strand, within HMPREF1058_RS16710 at 612.159 kb on + strand, within HMPREF1058_RS16710 at 612.192 kb on - strand, within HMPREF1058_RS16710 at 612.267 kb on + strand at 612.344 kb on - strand at 612.365 kb on - strand at 612.391 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 609,811 - HMPREF1058_RS16725 0.29 -0.7 609,814 + +3.6 609,893 + HMPREF1058_RS16725 0.35 +0.4 609,911 + HMPREF1058_RS16725 0.37 +0.5 609,911 + HMPREF1058_RS16725 0.37 -0.4 609,911 + HMPREF1058_RS16725 0.37 +1.9 609,935 - HMPREF1058_RS16725 0.38 -0.4 610,082 + HMPREF1058_RS16725 0.49 +0.7 610,089 - HMPREF1058_RS16725 0.50 -0.1 610,100 + HMPREF1058_RS16725 0.50 +0.7 610,101 - HMPREF1058_RS16725 0.51 +0.2 610,162 + HMPREF1058_RS16725 0.55 -2.5 610,163 - HMPREF1058_RS16725 0.55 -0.3 610,243 + HMPREF1058_RS16725 0.61 -0.4 610,287 - HMPREF1058_RS16725 0.64 +0.2 610,287 - HMPREF1058_RS16725 0.64 +2.6 610,287 - HMPREF1058_RS16725 0.64 +1.2 610,334 + HMPREF1058_RS16725 0.68 -0.6 610,334 + HMPREF1058_RS16725 0.68 +0.4 610,334 + HMPREF1058_RS16725 0.68 -1.3 610,357 + HMPREF1058_RS16725 0.69 -0.4 610,357 + HMPREF1058_RS16725 0.69 -0.1 610,358 - HMPREF1058_RS16725 0.70 +0.2 610,375 - HMPREF1058_RS16725 0.71 +0.3 610,421 - HMPREF1058_RS16725 0.74 +0.7 610,444 - HMPREF1058_RS16725 0.76 -0.1 610,467 + HMPREF1058_RS16725 0.78 -0.4 610,471 + HMPREF1058_RS16725 0.78 +0.6 610,471 + HMPREF1058_RS16725 0.78 -2.3 610,471 + HMPREF1058_RS16725 0.78 -0.5 610,471 + HMPREF1058_RS16725 0.78 +0.7 610,472 - HMPREF1058_RS16725 0.78 +0.2 610,513 + HMPREF1058_RS16725 0.81 -0.5 610,513 + HMPREF1058_RS16725 0.81 -0.2 610,513 + HMPREF1058_RS16725 0.81 +0.1 610,513 + HMPREF1058_RS16725 0.81 -0.5 610,513 + HMPREF1058_RS16725 0.81 -0.7 610,514 - HMPREF1058_RS16725 0.81 +0.9 610,514 - HMPREF1058_RS16725 0.81 -0.3 610,514 - HMPREF1058_RS16725 0.81 -0.1 610,608 - HMPREF1058_RS16725 0.88 +1.2 610,613 + HMPREF1058_RS16725 0.88 -0.8 610,614 - HMPREF1058_RS16725 0.88 +2.6 610,643 + +0.7 610,645 + -0.9 610,645 + -1.5 610,645 + -1.6 610,646 - +0.3 610,721 - +0.3 610,777 + +2.2 610,841 - -0.3 610,904 - HMPREF1058_RS16720 0.19 +0.7 610,911 - HMPREF1058_RS16720 0.20 +0.4 610,938 + HMPREF1058_RS16720 0.25 -0.0 610,940 + HMPREF1058_RS16720 0.25 +1.6 610,941 - HMPREF1058_RS16720 0.25 +2.1 610,975 + HMPREF1058_RS16720 0.31 -1.2 611,041 + HMPREF1058_RS16720 0.41 +0.9 611,041 + HMPREF1058_RS16720 0.41 +0.6 611,085 + HMPREF1058_RS16720 0.48 +0.8 611,285 - HMPREF1058_RS16720 0.80 -0.2 611,312 + HMPREF1058_RS16720 0.84 +1.7 611,390 + +0.1 611,453 + +0.6 611,455 + +0.0 611,543 + HMPREF1058_RS16715 0.17 -0.9 611,652 - HMPREF1058_RS16715 0.61 -0.5 611,735 + +0.0 611,749 + -0.2 611,766 + -1.3 611,796 - +0.0 611,803 + -0.2 611,803 + +0.5 611,804 - -0.4 611,804 - +0.1 611,804 - -2.1 611,804 - -1.5 611,805 + +0.4 611,806 - +1.3 611,844 + -1.6 611,845 - +0.6 611,847 - +0.0 611,847 - +0.6 611,916 + +0.6 611,918 + +0.7 611,919 - +0.0 611,940 - -0.1 611,942 - -0.4 611,944 + +1.0 611,994 + HMPREF1058_RS16710 0.12 +0.4 612,011 + HMPREF1058_RS16710 0.17 -0.8 612,033 + HMPREF1058_RS16710 0.24 -0.3 612,037 + HMPREF1058_RS16710 0.25 +0.1 612,037 + HMPREF1058_RS16710 0.25 +0.9 612,037 + HMPREF1058_RS16710 0.25 -0.1 612,038 - HMPREF1058_RS16710 0.26 -0.1 612,038 - HMPREF1058_RS16710 0.26 -0.8 612,038 - HMPREF1058_RS16710 0.26 +1.7 612,038 - HMPREF1058_RS16710 0.26 -0.3 612,039 + HMPREF1058_RS16710 0.26 -0.2 612,039 + HMPREF1058_RS16710 0.26 +0.1 612,040 - HMPREF1058_RS16710 0.26 -0.7 612,040 - HMPREF1058_RS16710 0.26 +0.5 612,040 - HMPREF1058_RS16710 0.26 +0.6 612,040 - HMPREF1058_RS16710 0.26 -0.5 612,042 + HMPREF1058_RS16710 0.27 +1.3 612,043 - HMPREF1058_RS16710 0.27 -0.1 612,043 - HMPREF1058_RS16710 0.27 -0.9 612,047 + HMPREF1058_RS16710 0.28 +0.1 612,047 + HMPREF1058_RS16710 0.28 -0.3 612,048 - HMPREF1058_RS16710 0.29 +0.2 612,159 + HMPREF1058_RS16710 0.63 -0.2 612,159 + HMPREF1058_RS16710 0.63 -0.6 612,192 - HMPREF1058_RS16710 0.73 +1.0 612,267 + +0.3 612,344 - +0.9 612,365 - -0.1 612,391 + -0.7
Or see this region's nucleotide sequence