Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16635 and HMPREF1058_RS16630 are separated by 169 nucleotides HMPREF1058_RS16630 and HMPREF1058_RS16625 are separated by 236 nucleotides HMPREF1058_RS16625 and HMPREF1058_RS16620 are separated by 18 nucleotides
HMPREF1058_RS16635: HMPREF1058_RS16635 - sodium:glutamate symporter, at 630,154 to 631,533
_RS16635
HMPREF1058_RS16630: HMPREF1058_RS16630 - DMP19 family protein, at 631,703 to 632,212
_RS16630
HMPREF1058_RS16625: HMPREF1058_RS16625 - hypothetical protein, at 632,449 to 633,150
_RS16625
HMPREF1058_RS16620: HMPREF1058_RS16620 - GGGtGRT protein, at 633,169 to 634,179
_RS16620
Position (kb) 631
632
633 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 630.752 kb on + strand, within HMPREF1058_RS16635 at 630.753 kb on - strand, within HMPREF1058_RS16635 at 630.797 kb on - strand at 630.797 kb on - strand, within HMPREF1058_RS16635 at 630.819 kb on - strand, within HMPREF1058_RS16635 at 630.910 kb on - strand, within HMPREF1058_RS16635 at 630.918 kb on - strand, within HMPREF1058_RS16635 at 631.017 kb on + strand, within HMPREF1058_RS16635 at 631.017 kb on + strand, within HMPREF1058_RS16635 at 631.017 kb on + strand, within HMPREF1058_RS16635 at 631.017 kb on + strand, within HMPREF1058_RS16635 at 631.018 kb on - strand, within HMPREF1058_RS16635 at 631.018 kb on - strand, within HMPREF1058_RS16635 at 631.018 kb on - strand, within HMPREF1058_RS16635 at 631.020 kb on - strand, within HMPREF1058_RS16635 at 631.061 kb on - strand, within HMPREF1058_RS16635 at 631.143 kb on - strand, within HMPREF1058_RS16635 at 631.143 kb on - strand, within HMPREF1058_RS16635 at 631.152 kb on - strand, within HMPREF1058_RS16635 at 631.155 kb on - strand, within HMPREF1058_RS16635 at 631.159 kb on + strand, within HMPREF1058_RS16635 at 631.160 kb on - strand, within HMPREF1058_RS16635 at 631.167 kb on - strand, within HMPREF1058_RS16635 at 631.175 kb on + strand, within HMPREF1058_RS16635 at 631.214 kb on - strand, within HMPREF1058_RS16635 at 631.266 kb on + strand, within HMPREF1058_RS16635 at 631.267 kb on - strand, within HMPREF1058_RS16635 at 631.296 kb on + strand, within HMPREF1058_RS16635 at 631.297 kb on - strand, within HMPREF1058_RS16635 at 631.364 kb on - strand, within HMPREF1058_RS16635 at 631.376 kb on - strand, within HMPREF1058_RS16635 at 631.501 kb on + strand at 631.518 kb on + strand at 631.519 kb on - strand at 631.531 kb on + strand at 631.573 kb on + strand at 631.596 kb on - strand at 631.617 kb on + strand at 631.617 kb on + strand at 631.622 kb on + strand at 631.626 kb on + strand at 631.653 kb on + strand at 631.688 kb on - strand at 631.744 kb on - strand at 631.825 kb on - strand, within HMPREF1058_RS16630 at 631.825 kb on - strand, within HMPREF1058_RS16630 at 631.969 kb on + strand, within HMPREF1058_RS16630 at 631.972 kb on - strand, within HMPREF1058_RS16630 at 631.972 kb on - strand, within HMPREF1058_RS16630 at 632.119 kb on - strand, within HMPREF1058_RS16630 at 632.119 kb on - strand, within HMPREF1058_RS16630 at 632.129 kb on - strand, within HMPREF1058_RS16630 at 632.216 kb on + strand at 632.222 kb on + strand at 632.222 kb on + strand at 632.223 kb on - strand at 632.224 kb on + strand at 632.224 kb on + strand at 632.224 kb on + strand at 632.225 kb on - strand at 632.228 kb on - strand at 632.229 kb on + strand at 632.234 kb on - strand at 632.280 kb on + strand at 632.316 kb on + strand at 632.321 kb on - strand at 632.327 kb on - strand at 632.390 kb on + strand at 632.417 kb on + strand at 632.616 kb on + strand, within HMPREF1058_RS16625 at 632.621 kb on + strand, within HMPREF1058_RS16625 at 632.633 kb on + strand, within HMPREF1058_RS16625 at 632.633 kb on + strand, within HMPREF1058_RS16625 at 632.736 kb on - strand, within HMPREF1058_RS16625 at 632.900 kb on + strand, within HMPREF1058_RS16625 at 632.904 kb on + strand, within HMPREF1058_RS16625 at 632.905 kb on - strand, within HMPREF1058_RS16625 at 632.905 kb on - strand, within HMPREF1058_RS16625 at 632.911 kb on + strand, within HMPREF1058_RS16625 at 632.911 kb on + strand, within HMPREF1058_RS16625 at 632.973 kb on - strand, within HMPREF1058_RS16625 at 633.169 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 630,752 + HMPREF1058_RS16635 0.43 +0.8 630,753 - HMPREF1058_RS16635 0.43 -0.6 630,797 - -0.4 630,797 - HMPREF1058_RS16635 0.47 -0.1 630,819 - HMPREF1058_RS16635 0.48 -0.5 630,910 - HMPREF1058_RS16635 0.55 -0.4 630,918 - HMPREF1058_RS16635 0.55 +0.1 631,017 + HMPREF1058_RS16635 0.63 +0.1 631,017 + HMPREF1058_RS16635 0.63 +0.7 631,017 + HMPREF1058_RS16635 0.63 -0.7 631,017 + HMPREF1058_RS16635 0.63 -0.6 631,018 - HMPREF1058_RS16635 0.63 -0.9 631,018 - HMPREF1058_RS16635 0.63 -3.1 631,018 - HMPREF1058_RS16635 0.63 +0.0 631,020 - HMPREF1058_RS16635 0.63 -0.8 631,061 - HMPREF1058_RS16635 0.66 -0.3 631,143 - HMPREF1058_RS16635 0.72 +0.1 631,143 - HMPREF1058_RS16635 0.72 +0.8 631,152 - HMPREF1058_RS16635 0.72 +1.9 631,155 - HMPREF1058_RS16635 0.73 -2.1 631,159 + HMPREF1058_RS16635 0.73 +0.1 631,160 - HMPREF1058_RS16635 0.73 +1.0 631,167 - HMPREF1058_RS16635 0.73 -0.4 631,175 + HMPREF1058_RS16635 0.74 +1.3 631,214 - HMPREF1058_RS16635 0.77 +1.1 631,266 + HMPREF1058_RS16635 0.81 -2.2 631,267 - HMPREF1058_RS16635 0.81 -0.4 631,296 + HMPREF1058_RS16635 0.83 -0.5 631,297 - HMPREF1058_RS16635 0.83 -0.4 631,364 - HMPREF1058_RS16635 0.88 -0.1 631,376 - HMPREF1058_RS16635 0.89 -1.1 631,501 + -1.0 631,518 + -0.2 631,519 - -1.8 631,531 + -0.3 631,573 + -0.9 631,596 - +0.0 631,617 + -1.0 631,617 + -1.0 631,622 + +0.3 631,626 + +0.2 631,653 + +1.8 631,688 - +1.2 631,744 - +0.5 631,825 - HMPREF1058_RS16630 0.24 -2.1 631,825 - HMPREF1058_RS16630 0.24 -0.4 631,969 + HMPREF1058_RS16630 0.52 -0.7 631,972 - HMPREF1058_RS16630 0.53 +1.5 631,972 - HMPREF1058_RS16630 0.53 +0.2 632,119 - HMPREF1058_RS16630 0.82 +0.5 632,119 - HMPREF1058_RS16630 0.82 +1.3 632,129 - HMPREF1058_RS16630 0.84 +0.6 632,216 + +2.1 632,222 + +0.2 632,222 + -0.9 632,223 - +1.1 632,224 + +0.1 632,224 + +0.9 632,224 + +0.8 632,225 - +0.6 632,228 - +0.1 632,229 + +0.7 632,234 - +0.7 632,280 + +0.2 632,316 + +0.7 632,321 - -1.1 632,327 - -0.4 632,390 + +0.1 632,417 + +0.2 632,616 + HMPREF1058_RS16625 0.24 -1.7 632,621 + HMPREF1058_RS16625 0.25 -3.0 632,633 + HMPREF1058_RS16625 0.26 -1.6 632,633 + HMPREF1058_RS16625 0.26 -2.7 632,736 - HMPREF1058_RS16625 0.41 -2.6 632,900 + HMPREF1058_RS16625 0.64 -1.8 632,904 + HMPREF1058_RS16625 0.65 -2.4 632,905 - HMPREF1058_RS16625 0.65 -2.8 632,905 - HMPREF1058_RS16625 0.65 -1.8 632,911 + HMPREF1058_RS16625 0.66 -0.5 632,911 + HMPREF1058_RS16625 0.66 -1.4 632,973 - HMPREF1058_RS16625 0.75 -0.2 633,169 - +0.9
Or see this region's nucleotide sequence